BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0010.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309453|ref|YP_003773545.1| elongation factor G1 [Herbaspir...   348   1e-97
gi|300313617|ref|YP_003777709.1| translation elongation factor [...   256   9e-70

>gi|300309453|ref|YP_003773545.1| elongation factor G1
           [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  348 bits (894), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 162/175 (92%), Positives = 170/175 (97%)

Query: 1   MRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMRARL 60
           MRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVY+QMRARL
Sbjct: 103 MRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYEQMRARL 162

Query: 61  KANPIPMQVPIGAEDNFEGVIDLVKMRAIYWDDASQGMKFDYRDIPEHLKEEAQKWRENM 120
           KANPIPMQVPIGAE+NFEGVIDLVKMRAIYWDDASQGMKFDYRDIPEHLK +AQKWREN+
Sbjct: 163 KANPIPMQVPIGAEENFEGVIDLVKMRAIYWDDASQGMKFDYRDIPEHLKADAQKWRENL 222

Query: 121 VEAAAEASEELMNKYLEDGDLSEEEIKAAIRQRTIASEIVPMMCGTAFKNKGVQA 175
           VE AAEASE+LMNKYLE+GDL+E EIK AIRQRTI+ EIVPMMCGTAFKNKGVQA
Sbjct: 223 VETAAEASEDLMNKYLEEGDLTEAEIKGAIRQRTISGEIVPMMCGTAFKNKGVQA 277


>gi|300313617|ref|YP_003777709.1| translation elongation factor
           [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  256 bits (653), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 145/175 (82%)

Query: 1   MRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMRARL 60
           MRVLDGA MVY +VGGVQPQSETVWRQANKYKVPR+AFVNKMDR GA+FF+V  Q+  RL
Sbjct: 103 MRVLDGAVMVYDSVGGVQPQSETVWRQANKYKVPRIAFVNKMDRIGADFFRVQKQIEERL 162

Query: 61  KANPIPMQVPIGAEDNFEGVIDLVKMRAIYWDDASQGMKFDYRDIPEHLKEEAQKWRENM 120
           K   +P+Q+P+GAED+F GVIDLVKM+AI WD+ASQG+ F Y DIP  L++ A+ WR+ M
Sbjct: 163 KGKAVPIQIPVGAEDHFSGVIDLVKMKAIIWDEASQGVLFKYEDIPLELEDTARHWRDLM 222

Query: 121 VEAAAEASEELMNKYLEDGDLSEEEIKAAIRQRTIASEIVPMMCGTAFKNKGVQA 175
           VE AAEA+EEL+ KYL    L+E++IK  +R RT+A+EIVPM+ G+AFKNKGVQA
Sbjct: 223 VEQAAEANEELLEKYLSGNPLTEDDIKRGLRLRTVANEIVPMLAGSAFKNKGVQA 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 546,497
Number of extensions: 20224
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)