BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0007.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309450|ref|YP_003773542.1| hemin transport protein [Herbas...   396   e-111

>gi|300309450|ref|YP_003773542.1| hemin transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/359 (53%), Positives = 256/359 (71%), Gaps = 4/359 (1%)

Query: 21  CSTTPDNNLAERWSALRVEQPRLQPRDAAQKLNVSEAELVATNVGKGATRLRDGSASYKA 80
           C+  P   L++RW+ L+  QPRL  R+AA +L VSEAEL+A++    ATRL   +   +A
Sbjct: 24  CAANPPT-LSQRWTQLQQAQPRLHLREAAHQLGVSEAELLASDANWQATRLTSDARDLQA 82

Query: 81  VYDRLHELGQIKAITRNDSAVLERVGTVTQAKLNQDGRVIPGTGFAGGPIDLRFGTDQWR 140
           +Y+RL ELG+IKA+ RND  +LER G VT A+ ++ GRV+PGTG AGGPIDLR G  QW 
Sbjct: 83  LYERLAELGRIKAVIRNDDVMLERTGAVTPARRDEQGRVVPGTGLAGGPIDLRIGGVQWG 142

Query: 141 SAFAVVQPGREGKISRSLQFFDVHGNAVNKVYLDNEAGVAAFDKLVADFKAAEQVAHLSV 200
           SAFAV QPGR+GK  RSLQFFD HG A++K+YLDN+  +AA+++LVA+F+ A Q A L  
Sbjct: 143 SAFAVAQPGRDGKALRSLQFFDQHGQAIHKIYLDNDEHIAAYERLVAEFRIAGQPAPLIA 202

Query: 201 DKAPVKV---VKKPNGEVDLKELRDTWSELSDVHEFPRLLKDLGITREQALDLIGKDAAY 257
             AP +    V+      D+ +LR  W++L+DVH+FPRLL++L ++REQAL LIG D+A+
Sbjct: 203 LPAPTQPPADVRGTASAADVAQLRQAWTKLTDVHQFPRLLRELKLSREQALQLIGDDSAW 262

Query: 258 RISAQSVQTLLDSAARQGQPIMVFVSNPGMTQIFSGTIKKVKQTDEWYNVLDPDFNLHLR 317
           RISAQ +Q L+D A  + QPIM FVS  GMTQI+SG I +   +  WY VL  DF L +R
Sbjct: 263 RISAQGLQLLMDDARARRQPIMAFVSQGGMTQIYSGMIDRSSNSGAWYEVLGEDFRLKVR 322

Query: 318 QAGIDRGWVVKRPAKDGVITSVEFYDAKGEQVVNFFSRRDRNKEETTAWRQIVASLAKA 376
            A ID GWVV+RP   G++TSVEFYDA G Q+VNFFSRRDR + ET  WR++V +L ++
Sbjct: 323 SATIDHGWVVRRPTDHGMVTSVEFYDAAGRQLVNFFSRRDRGQPETAQWRRMVEALPRS 381


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,134,733
Number of extensions: 45956
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)