BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0005.p (586 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/trans... 662 0.0 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 68 2e-12 gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin ... 68 2e-12 >gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/transferrin/lactoferrin receptor protein [Herbaspirillum seropedicae SmR1] Length = 765 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/590 (57%), Positives = 421/590 (71%), Gaps = 25/590 (4%) Query: 8 CAAV----LQQWAMTPATAQQTTQQLA-------------ALNRPLDEITVTATRG--VD 48 CAA LQQW A AQ Q A + L E+ VTA R D Sbjct: 11 CAAAVFLALQQWLCVGAYAQADQPQSVQSSSSDPSVVLAQASGKKLQEVVVTANRSGSSD 70 Query: 49 KNSNSKTPRTSXPEELEQQNAKDIKDALRYEPGVEVRRSVYRVGGVTGASATMGRGGNEG 108 + + T EE+EQ NA+DIKDALRYEPGVEV+RSVYR+ G+TG AT GRGGNEG Sbjct: 71 SDHAAATVSVISAEEIEQHNARDIKDALRYEPGVEVKRSVYRMSGITGPGATTGRGGNEG 130 Query: 109 INIRGLEGNRVMLLEDGVALPRAFSQGTLSAGRGAYTDTDLYQRIEILRGPASSMYGSDG 168 I+IRGL+GNRV++LEDG+++PR+FS GT S GRGA TDT+LY+RIE+LRGPASS+YGSDG Sbjct: 131 ISIRGLDGNRVLMLEDGISMPRSFSYGTSSVGRGATTDTELYRRIEVLRGPASSLYGSDG 190 Query: 169 LTGVVNFVTKDPQDLLNVFGKSSYFALRPSYDSSDSSYGATGTMAFGNDHVQGMLVLNAR 228 LTG VNF+TKDP DLL VFGKSSYF+ +PSYDS D S GA+ + A+G QGML+LN R Sbjct: 191 LTGAVNFITKDPADLLEVFGKSSYFSFKPSYDSGDHSSGASASAAWGGQQWQGMLILNTR 250 Query: 229 HGNETETNGSVGGTGAARTKADPLTYNNRSALGKLVFKIDPRNVFKLSFETVENKLRGDS 288 HG++ + GS G ART DP+ YN RSALGKLVF+ + ++FKL+ + E + GDS Sbjct: 251 HGSQADNKGSNDVLGTARTTPDPMHYNTRSALGKLVFRPNGVDLFKLTLQATEQRDSGDS 310 Query: 289 LSAVAAPTITGYQSASDVKSNKLQLQYEHDDTDNPVFQKLRANLYYRDSKTSQYSFENGA 348 LSA+ +T Y ++S + L YEH D ++P QK++A+L YR++ T QY++E GA Sbjct: 311 LSALTN-GVTQYHTSSKSTGQRATLAYEHVDAEHPWVQKIKASLTYRNADTDQYTYEAGA 369 Query: 349 AP---TRPRFRDISYQDDIFGGGVLAESGFNTGIIKHKLTYGVDLSVAKLQMAASGTGWT 405 + RPRFR ++YQD + G +LAES F +HKL YG+DLS++ LQ+ A+GTGW Sbjct: 370 SAGSIVRPRFRAVAYQDRMSAGSLLAESNFGPDSWRHKLVYGLDLSLSTLQVNANGTGWN 429 Query: 406 TCTGTQYCEYFPKTEYSVFGAYLQDDMRIGALSIVPGLRYDSYKIKPEASAKYDAQAIAN 465 TCTGTQYC+YFPKTE ++ G YLQD+MR GAL+ + GLRYDSY++KP+ASAKYDAQAIAN Sbjct: 430 TCTGTQYCQYFPKTESNLLGVYLQDEMRTGALTTIAGLRYDSYELKPQASAKYDAQAIAN 489 Query: 466 RQPASTSKDSAFSPRLAFIYEVAPAFAPYIQYARGFRSPSPHEVNSYFNNASQGYSQIAN 525 QPA +S+DSA SPRLA +YEV PAF PYIQYARGFRSPS EVNS+FNN Y Q++N Sbjct: 490 GQPAVSSRDSALSPRLALLYEVTPAFIPYIQYARGFRSPSAQEVNSFFNNTV--YRQVSN 547 Query: 526 PNLKPETSNSYEIGFRGKLPTSAGLFSYSTAAYAGEYRNFIDSVSVAGAL 575 P+LKPETSN+ E+G RGKL AG YS AAY G Y NFID V+V G L Sbjct: 548 PDLKPETSNTVELGLRGKLALGAGALRYSAAAYKGNYSNFIDLVTVGGNL 597 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 140/614 (22%), Positives = 232/614 (37%), Gaps = 140/614 (22%) Query: 20 ATAQQTTQQLAALNRPLDEITVTATRGVDK--------NSNSKTPRTSXPEELEQQNAKD 71 AT T A+ + P +I+ +A G + + + TP P+ + A+ Sbjct: 118 ATPSAATTPAASGSLPAIQISASADPGEQRWTARDSASTTKTATPLIEVPQSISVVTAER 177 Query: 72 I--------KDALRYEPGVEVRRSVYRVGGVTGASATMGRGGNEGINIRGLEGNRVMLLE 123 I +DAL Y PGV + S Y G+ + + IN+RG + Sbjct: 178 IAAMGATTARDALGYTPGVNI--SPY------GSDSRY-----DWINLRGFDAYSPGFYL 224 Query: 124 DGVALPRAFSQGTLSAGRGAYTDTDLYQRIEILRGPASSMYGSDGLTGVVNFVTKDPQDL 183 DG+ L A S T+ +++ +LRGPAS +YG G GVVN V+K Sbjct: 225 DGLPLRNANSFAVWR------TENYGIEQLAVLRGPASVLYGQAGPGGVVNVVSK----- 273 Query: 184 LNVFGKSSYFALRPSYDSSDSSYGATGTMAFGNDHVQGMLVLNARHGNETETNGSV--GG 241 PS D+ + G+D + + A G + +G + Sbjct: 274 ------------LPSADAPREL-----QVQLGSDRRRQV---GADIGGAIDADGRLLYRV 313 Query: 242 TGAARTKADPL--TYNNRSALG-KLVFKIDPRNVFKLSFETVENK----LRGDSLSAVAA 294 G R P N+R L LV+KI L + ++ R L Sbjct: 314 IGVVRDAELPAGGMKNDRLYLAPSLVWKISAATSLTLQAALLRDQGGVYTRTRPLVGSLV 373 Query: 295 PTITGYQSASDVKSNKLQLQYEHDDTDNPVFQKLRANLY------------------YRD 336 PT G S++ + ++H D +F A+ + YR Sbjct: 374 PTAIGTTIPSELYTGNPH--FDHFSQDQELFGYRLAHRFDERFAFTQSARVGHMSTDYRA 431 Query: 337 SKTSQYSFENGAAPTRP-RFRDISYQDDIFGGGVLA---------ESGFNTGIIKHKLTY 386 +T +++ N A P P F++++ ++FG A ++ F+TG ++H + Sbjct: 432 VQTPRFATLNAANPNDPVNFQNLT--RNLFGSRESATMFSIDNQLQADFSTGAVRHTVLA 489 Query: 387 GVDLSVAKLQMAASGTGWTTCTGTQYCEYFPKTEYSV-------------FGAYLQDDMR 433 GVD ++ A S +G + +P + V G YLQD ++ Sbjct: 490 GVDYQRSRFD-AVSFSGGSAPLLNIAAPSYPNGPFVVPAPYSDNRAVLTQTGIYLQDQIK 548 Query: 434 IG-ALSIVPGLRYDSYKIKPEASAKYDAQAIANRQPASTSKDSAFSPRLAFIYEVAPAFA 492 + G R+DS AS+ D + +R ++S D F+ R A +Y A A Sbjct: 549 WNNGWEVTLGGRHDS------ASSTVDNRLDGSR---TSSTDRKFTRRAAVLYHAANGLA 599 Query: 493 PYIQYARGFRSPSPHEVNSYFNNASQGYSQIANPNLKPETSNSYEIGFRGKLPTSAGLFS 552 PY+ Y F N + + + N + PET E+G R + P + L Sbjct: 600 PYLSYTESF-------------NPTATVNPLTNQSFGPETGKQTEVGLRYQPPGTNDL-- 644 Query: 553 YSTAAYAGEYRNFI 566 YS A + + +N+I Sbjct: 645 YSAALFDLKRQNYI 658 >gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin receptor protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 131/558 (23%), Positives = 218/558 (39%), Gaps = 125/558 (22%) Query: 39 ITVTATR-GVDKNSNSKTP-RTSXPEELEQQNAKDIKDALRYEPGVEVRRSVYRVGGVTG 96 I VTAT G ++ TP + +EL + + + L E GV Sbjct: 58 IVVTATPFGSQEDVQVLTPAKVIAGDELRNKLGNSLGETLSSELGV-------------- 103 Query: 97 ASATMGRGGNEGINIRGLEGNRVMLLEDGVALPRAFSQGTLSAGRGAYTDTDLYQRIEIL 156 +++ G G + I IRG+EG RVM+L++G+ + T+S T+ ++IEIL Sbjct: 104 SASAFGAGASRPI-IRGMEGPRVMILQNGMGVSDV---STVSNDHAVATEAATARQIEIL 159 Query: 157 RGPASSMYGSDGLTGVVNFVT-KDPQDLL-----NVFG--------KSSYFALRPSYDSS 202 RGPA+ +YGS + G+VN V + P +L+ V G K++ F+L Sbjct: 160 RGPAALLYGSGAIGGLVNVVNDRIPTELVGKPTGTVEGRYGTVDGEKNTSFSL------- 212 Query: 203 DSSYGATGTMAFGN--DHVQGMLVLNARHGNETETNGSVGGTGAARTKADPLTYNNRSAL 260 D+S G G GN D + NAR G+ + +G + P ++ + S++ Sbjct: 213 DTSAGQIGLHLDGNYRDTSDYKIPGNARQGDGSTASGRL-----------PNSFTHESSV 261 Query: 261 GKLVFKIDPRNVFKLSFETVENKLRGDSLSAVAAPTITGYQSASDVKSNKLQLQYEHDDT 320 G + +S T+++ P T S D+ N+ Y+ D Sbjct: 262 GLGASYVSNWGYVGVSAATLDDHY--------GIP--TSELSFIDLHQNR----YDIDTV 307 Query: 321 DNPVF---QKLRANLYYRD--------SKTSQYSFENGAAPTRPRFRDISYQDDIFGGGV 369 N F +KLR L Y D T F N A TR Sbjct: 308 VNQPFAGIEKLRMRLGYTDYTHIEKQRDGTPDTVFSNRAVQTRWELTHAPL--------- 358 Query: 370 LAESGFNTGIIKHKLTYGVDLSVAKLQMAASGTGWTTCTGTQYCEYFPKTEYSVFGAYLQ 429 +G++ T+GV + ++ TG E P T + F +L Sbjct: 359 ---AGWHG-------TFGVQTEQSNYSALSAATG--------AAELTPPTRSTSFAGFLV 400 Query: 430 DDMRIGALSIVPGLRYDSYKIKPEASAKYDAQAIANRQPASTSKD-SAFSPRLAFIYEVA 488 ++ + G + GLR +S +P+ A RQ +D + S ++ Sbjct: 401 EERQFGQVLASAGLRGESVSRRPD----------AGRQ----GRDFNLLSWSTGALWTFQ 446 Query: 489 PAFAPYIQYARGFRSPSPHEVNSYFNNASQGYSQIANPNLKPETSNSYEIGFRGKLPTSA 548 P + + Y+ R+P+ E+ S + S I + LK ETS++ E+ L + Sbjct: 447 PGYGLGLTYSLAQRAPTVEELYSNGPHESTSTFDIGSSQLKKETSHNIEL----SLQKTE 502 Query: 549 GLFSYSTAAYAGEYRNFI 566 GL + + + N+I Sbjct: 503 GLVRWKGNLFRNKVNNYI 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,692,203 Number of extensions: 68643 Number of successful extensions: 172 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 4 Length of query: 586 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 496 Effective length of database: 1,193,720 Effective search space: 592085120 Effective search space used: 592085120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)