BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0007.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...   333   1e-92

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score =  333 bits (853), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/229 (74%), Positives = 187/229 (81%), Gaps = 14/229 (6%)

Query: 1   MVLPRHLSPSELPTLFAAMFPDPDDAEWLLELDQALQERLWKLAADDGISHTYWQQIEEA 60
           ++LPRHLSP++L +LF AMFPDPDDA WLLELD  L +RLWKL ADDGISH YWQQIEEA
Sbjct: 131 LILPRHLSPTDLSSLFTAMFPDPDDAVWLLELDNDLLQRLWKLMADDGISHMYWQQIEEA 190

Query: 61  LTYLTTVVVADGISPAFRQRLEPKMPLQATPFMALRREMEAYLRAGPHDEGALRSARMLI 120
           +TYLTT VVADGISPAFRQRLEPKMP++ATPF+ALRREMEA+LRA P D GALRS RML+
Sbjct: 191 ITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDMGALRSVRMLV 250

Query: 121 AVCQAQTDRIYAHLDEYGVSVSLVYRIERMRAQLTRMGRLIDVRSATWREP--------- 171
           AVC AQTDRIYAHLDEYGVSVSLVYR+ERMRA L R+GRLIDVRS     P         
Sbjct: 251 AVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGM---PGPAISPAVP 307

Query: 172 --RTGRGAGRVQLLLADLIAAHHSRSSVRSLVRRSFALLARKMVXRQSD 218
                 GAGRVQLLL DLI+AHH R SVR L+RRSFALLARKMV R +D
Sbjct: 308 GMAVKPGAGRVQLLLCDLISAHHHRDSVRGLMRRSFALLARKMVERNAD 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 928,619
Number of extensions: 39183
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)