BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0005.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310941|ref|YP_003775033.1| ATPase [Herbaspirillum seropedi...   526   e-151

>gi|300310941|ref|YP_003775033.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 291

 Score =  526 bits (1356), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/279 (89%), Positives = 267/279 (95%)

Query: 6   RFEGSSSYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVAAALNRPLLQWHIKS 65
           +F GS +YVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVAAAL RPLLQWHIKS
Sbjct: 13  KFTGSENYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVAAALGRPLLQWHIKS 72

Query: 66  TTKAQQGLYEYDAVSRLRDSQLGDERVKDIHNYIVKGVLWQAFSADEPQVLLIDEIDKAD 125
           TTKAQQGLYEYDAVSRLRDSQLG+ERVKDIHNYIVKGVLWQAF+ADEP VLLIDEIDKAD
Sbjct: 73  TTKAQQGLYEYDAVSRLRDSQLGEERVKDIHNYIVKGVLWQAFTADEPVVLLIDEIDKAD 132

Query: 126 IEFPNDLLRELDRMEFYVYETREMVRAKHRPLVIITSNNEKELPDAFLRRCFFHYIKFPD 185
           IEFPNDLLRELDRMEFYVYETRE+VRA+HRPLV+ITSNNEKELPDAFLRRCFFHYIKFPD
Sbjct: 133 IEFPNDLLRELDRMEFYVYETRELVRARHRPLVVITSNNEKELPDAFLRRCFFHYIKFPD 192

Query: 186 KDTMQQIVDVHFPHLKRDLLAQALQTFYEVRDIAGLKKKPSTSELIDWLKLLLAEDIPAE 245
           K+TMQ IVDVHFPH+KRDLLA+AL  FY+VRD+ G+KKKPSTSELIDWLKLL+AEDIP E
Sbjct: 193 KETMQSIVDVHFPHIKRDLLARALDAFYQVRDVPGIKKKPSTSELIDWLKLLMAEDIPPE 252

Query: 246 TLHSKDGKAAIPPLHGALLKNEQDVHLFERLVFMSRNNR 284
            LHS+D KA +PPLHGALLKNEQDVHLFERLVFMSRN+R
Sbjct: 253 ALHSQDNKAVVPPLHGALLKNEQDVHLFERLVFMSRNHR 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,366
Number of extensions: 33763
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)