BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0260.0009.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766675.1| hypothetical protein blr0035 [Bradyrhizobium ja...   243   8e-63
ref|ZP_06890745.1| IS66 Orf2 family protein [Methylosinus tricho...   173   6e-42
ref|ZP_08075098.1| IS66 Orf2 family protein [Methylocystis sp. A...   172   2e-41
emb|CAM77959.1| IS66 Orf2 like [Magnetospirillum gryphiswaldense...   160   4e-38
emb|CAJ30055.1| putative IS66 family transposase [Magnetospirill...   160   5e-38

>ref|NP_766675.1| hypothetical protein blr0035 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45300.1| blr0035 [Bradyrhizobium japonicum USDA 110]
          Length = 118

 Score =  243 bits (620), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD 60
           MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD
Sbjct: 1   MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD 60

Query: 61  GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKGPKRENPKHLEFFRRTLGCR 118
           GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKGPKRENPKHLEFFRRTLGCR
Sbjct: 61  GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKGPKRENPKHLEFFRRTLGCR 118


>ref|ZP_06890745.1| IS66 Orf2 family protein [Methylosinus trichosporium OB3b]
 gb|EFH00775.1| IS66 Orf2 family protein [Methylosinus trichosporium OB3b]
          Length = 102

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/99 (84%), Positives = 89/99 (89%)

Query: 1  MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD 60
          MIP+P+G RVWIATGHTDMRRGMQ LAL VQE L+RDPHAGDLYIFRGRRGDL KILWHD
Sbjct: 1  MIPLPAGCRVWIATGHTDMRRGMQGLALQVQEQLQRDPHAGDLYIFRGRRGDLAKILWHD 60

Query: 61 GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKG 99
          GLG+SLYAKRLDRGKFIWPSAS GAVSISAAQM    +G
Sbjct: 61 GLGLSLYAKRLDRGKFIWPSASAGAVSISAAQMAYMLEG 99


>ref|ZP_08075098.1| IS66 Orf2 family protein [Methylocystis sp. ATCC 49242]
 gb|EFX97249.1| IS66 Orf2 family protein [Methylocystis sp. ATCC 49242]
          Length = 115

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/106 (78%), Positives = 91/106 (85%)

Query: 1   MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD 60
           MIP+P+G RVWIATGHTDMRRGM+ LAL VQE LKRDPHAGDLYIFRGRRGDL KILWHD
Sbjct: 1   MIPLPAGCRVWIATGHTDMRRGMRGLALQVQEQLKRDPHAGDLYIFRGRRGDLAKILWHD 60

Query: 61  GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKGPKRENPK 106
           G+G+SLYA+RLDRGKFIWPSAS GAVSISA QM    +G    NP+
Sbjct: 61  GIGLSLYAERLDRGKFIWPSASAGAVSISAGQMAYMLEGIDWRNPQ 106


>emb|CAM77959.1| IS66 Orf2 like [Magnetospirillum gryphiswaldense MSR-1]
 emb|CAM78076.1| IS66 Orf2 like [Magnetospirillum gryphiswaldense MSR-1]
 emb|CAM78088.1| IS66 Orf2 like [Magnetospirillum gryphiswaldense MSR-1]
          Length = 115

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 89/107 (83%)

Query: 1   MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD 60
           MIP+P+GVRVW+A G TDMRRGM  LAL VQE+L RDPHAGDL++FRG RGDL+K+LWHD
Sbjct: 1   MIPVPTGVRVWLAVGRTDMRRGMNGLALQVQEALGRDPHAGDLFVFRGARGDLIKVLWHD 60

Query: 61  GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKGPKRENPKH 107
           GLGMSLYAKRL++G+FIWPS +DG V+IS+AQ+     G    NP+H
Sbjct: 61  GLGMSLYAKRLEKGRFIWPSPADGVVAISSAQLAYMLDGIDWRNPRH 107


>emb|CAJ30055.1| putative IS66 family transposase [Magnetospirillum gryphiswaldense
           MSR-1]
 emb|CAJ30166.1| putative IS66 family transposase [Magnetospirillum gryphiswaldense
           MSR-1]
 emb|CAJ30177.1| putative IS66 family transposase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 187

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 89/107 (83%)

Query: 1   MIPIPSGVRVWIATGHTDMRRGMQSLALAVQESLKRDPHAGDLYIFRGRRGDLVKILWHD 60
           MIP+P+GVRVW+A G TDMRRGM  LAL VQE+L RDPHAGDL++FRG RGDL+K+LWHD
Sbjct: 73  MIPVPTGVRVWLAVGRTDMRRGMNGLALQVQEALGRDPHAGDLFVFRGARGDLIKVLWHD 132

Query: 61  GLGMSLYAKRLDRGKFIWPSASDGAVSISAAQMGPETKGPKRENPKH 107
           GLGMSLYAKRL++G+FIWPS +DG V+IS+AQ+     G    NP+H
Sbjct: 133 GLGMSLYAKRLEKGRFIWPSPADGVVAISSAQLAYMLDGIDWRNPRH 179