BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0259.0021.p (370 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABC26869.1| AldA [Bradyrhizobium sp. UPM1167] 704 0.0 ref|NP_768378.1| alanine dehydrogenase [Bradyrhizobium japonicum... 685 0.0 ref|NP_769819.1| alanine dehydrogenase oxidoreductase protein [B... 592 e-167 ref|NP_385730.1| alanine dehydrogenase oxidoreductase protein [S... 562 e-158 ref|YP_001327051.1| alanine dehydrogenase [Sinorhizobium medicae... 561 e-158 >gb|ABC26869.1| AldA [Bradyrhizobium sp. UPM1167] Length = 370 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/370 (97%), Positives = 364/370 (98%) Query: 1 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIEANAGAGIGATDDDYRAAGATILDS 60 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIE NAGAGIGATDDDYRA GATIL S Sbjct: 1 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIETNAGAGIGATDDDYRAVGATILAS 60 Query: 61 AGEVFASSEMIVKVKEPQPSEWSQLRESQILFTYLHLAPDPEQAKGLLKSGCTAIAYETV 120 AGEVFASSEMIVKVKEPQPSEWSQLRE QILFTYLHLAPDPEQAKGLLKSGCTAIAYETV Sbjct: 61 AGEVFASSEMIVKVKEPQPSEWSQLREGQILFTYLHLAPDPEQAKGLLKSGCTAIAYETV 120 Query: 121 TDAHGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG 180 TD HGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG Sbjct: 121 TDGHGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG 180 Query: 181 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIESLEEEVFAADVVIGAVL 240 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIES+EEEVFAADVVIGAVL Sbjct: 181 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIESVEEEVFAADVVIGAVL 240 Query: 241 VPGASAPKLVRRSMLSSMRKRAVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN 300 VPGASAPKLVRRSMLSSMRK AVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN Sbjct: 241 VPGASAPKLVRRSMLSSMRKSAVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN 300 Query: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLDNPHLRAGLNVHRGRLTYKAVAESLGL 360 MPGAVPLTSSQALNNATLPFGLALANKGFSAVL+NPHLRAGLNVHRGRLTYKAVAESLGL Sbjct: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLENPHLRAGLNVHRGRLTYKAVAESLGL 360 Query: 361 PFSPIEQAAA 370 PFSPIEQAAA Sbjct: 361 PFSPIEQAAA 370 >ref|NP_768378.1| alanine dehydrogenase [Bradyrhizobium japonicum USDA 110] gb|AAG60724.1|AF322012_29 AldA [Bradyrhizobium japonicum] dbj|BAC47003.1| alanine dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 370 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/370 (95%), Positives = 357/370 (96%) Query: 1 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIEANAGAGIGATDDDYRAAGATILDS 60 MKVGVPKEIKAHEYRVGLTPGA REYVAAGHRVMIE NAGAGIGATD DYR AGATIL S Sbjct: 1 MKVGVPKEIKAHEYRVGLTPGAAREYVAAGHRVMIETNAGAGIGATDGDYRNAGATILTS 60 Query: 61 AGEVFASSEMIVKVKEPQPSEWSQLRESQILFTYLHLAPDPEQAKGLLKSGCTAIAYETV 120 A EVFASSEMIVKVKEPQP+EWSQLRE QILFTYLHLAPDPEQA GLLKSGC AIAYETV Sbjct: 61 AAEVFASSEMIVKVKEPQPAEWSQLREDQILFTYLHLAPDPEQAAGLLKSGCIAIAYETV 120 Query: 121 TDAHGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG 180 TDAHGGLPLLAPMSEVAGRL+IEAAGSALKRS GGRGLLIGGVPGVQPARIVVIGGGVVG Sbjct: 121 TDAHGGLPLLAPMSEVAGRLSIEAAGSALKRSTGGRGLLIGGVPGVQPARIVVIGGGVVG 180 Query: 181 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIESLEEEVFAADVVIGAVL 240 THAARMA GLGAEVTIIDRSI RLRELDELFEGRVRTRFSTIES+EEEVFAADVVIGAVL Sbjct: 181 THAARMAAGLGAEVTIIDRSIIRLRELDELFEGRVRTRFSTIESVEEEVFAADVVIGAVL 240 Query: 241 VPGASAPKLVRRSMLSSMRKRAVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN 300 VPGASAPKLVRRSMLSSMRKRAV+VDVAIDQGGCFETS PTTHADPTYEVDGIIHYCVAN Sbjct: 241 VPGASAPKLVRRSMLSSMRKRAVLVDVAIDQGGCFETSRPTTHADPTYEVDGIIHYCVAN 300 Query: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLDNPHLRAGLNVHRGRLTYKAVAESLGL 360 MPGAVPLTSSQALNNATLPFGLALANKGFSAVL+NPHLRAGLNVHRGRLTYKAVAESLGL Sbjct: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLENPHLRAGLNVHRGRLTYKAVAESLGL 360 Query: 361 PFSPIEQAAA 370 PFSPIEQAAA Sbjct: 361 PFSPIEQAAA 370 >ref|NP_769819.1| alanine dehydrogenase oxidoreductase protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48444.1| blr3179 [Bradyrhizobium japonicum USDA 110] Length = 371 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 310/366 (84%), Positives = 338/366 (92%) Query: 1 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIEANAGAGIGATDDDYRAAGATILDS 60 M+VGVPKEIK EYRVGLTPGAVREYVAAGH+V +E AG+GIGA+D+ YR AGA I S Sbjct: 1 MRVGVPKEIKVQEYRVGLTPGAVREYVAAGHQVTVETGAGSGIGASDEVYRRAGAEIAGS 60 Query: 61 AGEVFASSEMIVKVKEPQPSEWSQLRESQILFTYLHLAPDPEQAKGLLKSGCTAIAYETV 120 A +VFASS+MIVKVKEPQ SEW+QLRESQILFTYLHLAPDPEQAKGLL SGCTAIAYETV Sbjct: 61 ARDVFASSDMIVKVKEPQKSEWTQLRESQILFTYLHLAPDPEQAKGLLASGCTAIAYETV 120 Query: 121 TDAHGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG 180 TDA G LPLLAPMSEVAGRLAIEAAG+ALKRSAGGRGLL+GGVPGVQPAR+VV+GGGVVG Sbjct: 121 TDAAGRLPLLAPMSEVAGRLAIEAAGAALKRSAGGRGLLLGGVPGVQPARVVVLGGGVVG 180 Query: 181 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIESLEEEVFAADVVIGAVL 240 T AARMA GLGAEVT+IDRSIPRLRELD++F GRVRTRFSTIE++EEEVFAADVVIGAVL Sbjct: 181 TQAARMAAGLGAEVTVIDRSIPRLRELDDVFLGRVRTRFSTIEAVEEEVFAADVVIGAVL 240 Query: 241 VPGASAPKLVRRSMLSSMRKRAVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN 300 VPGASAPKLV R+ML SMR AV+VDVAIDQGGCFETSH TTH DPTYEVDG++HYCVAN Sbjct: 241 VPGASAPKLVTRAMLKSMRPGAVLVDVAIDQGGCFETSHATTHTDPTYEVDGVVHYCVAN 300 Query: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLDNPHLRAGLNVHRGRLTYKAVAESLGL 360 MPGAVP+TSSQALNNATLPFGL LANKGF+AVL+NPHLR GLNVHRGR+T KAVAESLGL Sbjct: 301 MPGAVPVTSSQALNNATLPFGLMLANKGFAAVLENPHLRNGLNVHRGRITNKAVAESLGL 360 Query: 361 PFSPIE 366 F+P+E Sbjct: 361 EFAPVE 366 >ref|NP_385730.1| alanine dehydrogenase oxidoreductase protein [Sinorhizobium meliloti 1021] ref|YP_004548879.1| alanine dehydrogenase [Sinorhizobium meliloti AK83] emb|CAC46203.1| Probable alanine dehydrogenase oxidoreductase [Sinorhizobium meliloti 1021] gb|AEG04288.1| alanine dehydrogenase [Sinorhizobium meliloti BL225C] gb|AEG53265.1| alanine dehydrogenase [Sinorhizobium meliloti AK83] gb|AEH79135.1| Alanine dehydrogenase [Sinorhizobium meliloti SM11] Length = 372 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/359 (73%), Positives = 319/359 (88%) Query: 1 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIEANAGAGIGATDDDYRAAGATILDS 60 M+VG PKEIK HEYRVGLTPG+VREYVA GH V++E AGAGIGA DD YRAAGA I+ + Sbjct: 1 MRVGCPKEIKNHEYRVGLTPGSVREYVAHGHEVIVETKAGAGIGADDDSYRAAGARIVPT 60 Query: 61 AGEVFASSEMIVKVKEPQPSEWSQLRESQILFTYLHLAPDPEQAKGLLKSGCTAIAYETV 120 A EVF ++MIVKVKEPQPSEW+QLRE QIL+TYLHLAPDPEQ +GLLKSG TA+AYETV Sbjct: 61 AREVFEKADMIVKVKEPQPSEWAQLREGQILYTYLHLAPDPEQTQGLLKSGVTAVAYETV 120 Query: 121 TDAHGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG 180 TD GGLPLLAPMSEVAGRLAI+A ++L+++ GGRG+L+GGVPGV PA++ +IGGGVVG Sbjct: 121 TDERGGLPLLAPMSEVAGRLAIQAGATSLQKANGGRGILLGGVPGVLPAKVAIIGGGVVG 180 Query: 181 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIESLEEEVFAADVVIGAVL 240 HAA+MA GLGA+V+I+DRS+PRLR+LD++F GRV TR+STI++LEEEVF+AD+VIGAVL Sbjct: 181 LHAAKMAAGLGADVSILDRSLPRLRQLDDIFNGRVHTRYSTIDALEEEVFSADMVIGAVL 240 Query: 241 VPGASAPKLVRRSMLSSMRKRAVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN 300 +PGA+APKLV R MLS+M+K AVIVDVAIDQGGCFETSH TTH++PTYEV+GI+HYCVAN Sbjct: 241 IPGAAAPKLVTREMLSAMKKGAVIVDVAIDQGGCFETSHATTHSEPTYEVEGIVHYCVAN 300 Query: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLDNPHLRAGLNVHRGRLTYKAVAESLG 359 MPGAVP+TS+ ALNNATL +GL LA++G A+ ++ HLRAGLNVHRGR+T AVAE+LG Sbjct: 301 MPGAVPITSAHALNNATLQYGLQLADRGLKAIAEDRHLRAGLNVHRGRVTNAAVAEALG 359 >ref|YP_001327051.1| alanine dehydrogenase [Sinorhizobium medicae WSM419] gb|ABR60216.1| alanine dehydrogenase [Sinorhizobium medicae WSM419] Length = 372 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/359 (73%), Positives = 320/359 (89%) Query: 1 MKVGVPKEIKAHEYRVGLTPGAVREYVAAGHRVMIEANAGAGIGATDDDYRAAGATILDS 60 M+VG PKEIK HEYRVGLTPG+VREYVA GH V++E+ AGAGIGA DD YRAAGA I+ + Sbjct: 1 MRVGCPKEIKNHEYRVGLTPGSVREYVAHGHEVIVESKAGAGIGADDDSYRAAGARIVPA 60 Query: 61 AGEVFASSEMIVKVKEPQPSEWSQLRESQILFTYLHLAPDPEQAKGLLKSGCTAIAYETV 120 A +VF ++M+VKVKEPQPSEW+QLRE QIL+TYLHLAPDPEQ +GLLKSG TAIAYETV Sbjct: 61 ARDVFEKADMVVKVKEPQPSEWAQLREGQILYTYLHLAPDPEQTQGLLKSGVTAIAYETV 120 Query: 121 TDAHGGLPLLAPMSEVAGRLAIEAAGSALKRSAGGRGLLIGGVPGVQPARIVVIGGGVVG 180 TD GGLPLLAPMSEVAGRLAI+A ++L+++ GGRG+L+GGVPGV PA++ +IGGGVVG Sbjct: 121 TDERGGLPLLAPMSEVAGRLAIQAGATSLQKANGGRGILLGGVPGVLPAKVAIIGGGVVG 180 Query: 181 THAARMAVGLGAEVTIIDRSIPRLRELDELFEGRVRTRFSTIESLEEEVFAADVVIGAVL 240 HAA+MA GLGA+V+I+DRS+PRLR+LD++F GRV TR+STI++LEEEVF+AD+VIGAVL Sbjct: 181 LHAAKMAAGLGADVSILDRSLPRLRQLDDIFNGRVHTRYSTIDALEEEVFSADLVIGAVL 240 Query: 241 VPGASAPKLVRRSMLSSMRKRAVIVDVAIDQGGCFETSHPTTHADPTYEVDGIIHYCVAN 300 +PGA+APKLV R MLS+M+K AVIVDVAIDQGGCFETSH TTH++PTYEVDGI+HYCVAN Sbjct: 241 IPGAAAPKLVTREMLSAMKKGAVIVDVAIDQGGCFETSHATTHSEPTYEVDGIVHYCVAN 300 Query: 301 MPGAVPLTSSQALNNATLPFGLALANKGFSAVLDNPHLRAGLNVHRGRLTYKAVAESLG 359 MPGAVP+TS+ ALNNATL +GL LA++G A+ ++ HLRAGLNVHRGR+T AVAE+LG Sbjct: 301 MPGAVPITSAHALNNATLHYGLQLADRGLKAIAEDRHLRAGLNVHRGRVTNVAVAEALG 359