BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0259.0019.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABC26867.1| HypD [Bradyrhizobium sp. UPM1167] 767 0.0 sp|Q9ANP1.1|HYPD1_BRAJA RecName: Full=Hydrogenase expression/for... 702 0.0 ref|NP_768376.1| hydrogenase expression/formation protein [Brady... 700 0.0 ref|NP_773568.1| HypD' protein [Bradyrhizobium japonicum USDA 11... 645 0.0 gb|ABC17841.1| HypD [Bradyrhizobium sp. UPM1029] 642 0.0 >gb|ABC26867.1| HypD [Bradyrhizobium sp. UPM1167] Length = 380 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/380 (97%), Positives = 374/380 (98%) Query: 1 MKYADEFRDKTIAQGLARAIGAEAGPRRAYRFMEFCGGHTHAISRYGLEDLLPANVRMIH 60 MKY DEFRDKTIAQGLARAIGAEAG RRAYRFMEFCGGHTHAISRYGLEDLLPAN+RMIH Sbjct: 1 MKYVDEFRDKTIAQGLARAIGAEAGARRAYRFMEFCGGHTHAISRYGLEDLLPANIRMIH 60 Query: 61 GPGCPVCVLPASRIDMAVRLAERPEVTLCVYGDLMRAPGSQGQSLMRAKALGADIRMVYS 120 GPGCPVCVLPASRIDMA+RL ERPEVTLCVYGDLMR PGSQGQSLMRAKALGADIRMVYS Sbjct: 61 GPGCPVCVLPASRIDMAIRLVERPEVTLCVYGDLMRVPGSQGQSLMRAKALGADIRMVYS 120 Query: 121 TLDAIRLAEQVPTREVVFFAIGFETTTPPTAVMVRIAEKKRLRGLSVFCNHVLTPSAMHS 180 TLDAIRLAEQVP+REVVFFAIGFETTTPPTAVM+RIAEKKRLRGLSVFCNHVLTPSAMHS Sbjct: 121 TLDAIRLAEQVPSREVVFFAIGFETTTPPTAVMIRIAEKKRLRGLSVFCNHVLTPSAMHS 180 Query: 181 ILENPKMRNIGGVAIDGFVGPAHVSTIIGTQPYEPLVEQFGKPIVIAGFEPLDVMQAILM 240 ILENPKMRNIGG AIDGFVGPAHVSTIIGTQPYEPL EQFGKPIVIAGFEPLDVMQAILM Sbjct: 181 ILENPKMRNIGGGAIDGFVGPAHVSTIIGTQPYEPLAEQFGKPIVIAGFEPLDVMQAILM 240 Query: 241 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA 300 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA Sbjct: 241 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA 300 Query: 301 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG 360 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG Sbjct: 301 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG 360 Query: 361 ACAAYWTYGRVRDDQVRRLS 380 ACAAYWTYGRVRDDQVRR+S Sbjct: 361 ACAAYWTYGRVRDDQVRRMS 380 >sp|Q9ANP1.1|HYPD1_BRAJA RecName: Full=Hydrogenase expression/formation protein hypD1 gb|AAG60722.1|AF322012_27 HypD [Bradyrhizobium japonicum] Length = 380 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/380 (86%), Positives = 356/380 (93%) Query: 1 MKYADEFRDKTIAQGLARAIGAEAGPRRAYRFMEFCGGHTHAISRYGLEDLLPANVRMIH 60 MKY+ EFRDKTIAQGLARAI AE +RAYRF+EFCGGHTHAISRYGLEDLLPANVRMIH Sbjct: 1 MKYSSEFRDKTIAQGLARAIDAEVSSQRAYRFVEFCGGHTHAISRYGLEDLLPANVRMIH 60 Query: 61 GPGCPVCVLPASRIDMAVRLAERPEVTLCVYGDLMRAPGSQGQSLMRAKALGADIRMVYS 120 GPGCPVCVLPASRIDMA+RLAERPEV LCVYGDLMRAPGSQGQSL+ AKALGA IRMVYS Sbjct: 61 GPGCPVCVLPASRIDMAIRLAERPEVILCVYGDLMRAPGSQGQSLLLAKALGAHIRMVYS 120 Query: 121 TLDAIRLAEQVPTREVVFFAIGFETTTPPTAVMVRIAEKKRLRGLSVFCNHVLTPSAMHS 180 TLDAIRLAEQ P REVVFFAIGFETTTPPTAVM+RIAE KRL GLSVFCNHVLTPSAMH Sbjct: 121 TLDAIRLAEQTPGREVVFFAIGFETTTPPTAVMIRIAEHKRLEGLSVFCNHVLTPSAMHR 180 Query: 181 ILENPKMRNIGGVAIDGFVGPAHVSTIIGTQPYEPLVEQFGKPIVIAGFEPLDVMQAILM 240 ILENPK+RN GGV IDGF+GPAHVSTI+GTQPYEP+ EQF KPIV+AGFEPLDV+QA+LM Sbjct: 181 ILENPKIRNTGGVPIDGFIGPAHVSTIVGTQPYEPMAEQFEKPIVVAGFEPLDVLQAVLM 240 Query: 241 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA 300 LVRQVN+ R+EVENQYSRAVTR+GNRRAK+EVSQVFELREQFEWRGLGLVPNSGLKLK++ Sbjct: 241 LVRQVNQNRHEVENQYSRAVTREGNRRAKEEVSQVFELREQFEWRGLGLVPNSGLKLKQS 300 Query: 301 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG 360 YA FDAE RFA+H+LRVADNPACECCAILRGAKRP+DCKLFG +CTPETP+G+CMVSSEG Sbjct: 301 YAKFDAETRFAIHDLRVADNPACECCAILRGAKRPIDCKLFGNICTPETPIGACMVSSEG 360 Query: 361 ACAAYWTYGRVRDDQVRRLS 380 ACAAYWTY RVRD+Q R+ S Sbjct: 361 ACAAYWTYRRVRDEQARQTS 380 >ref|NP_768376.1| hydrogenase expression/formation protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47001.1| hydrogenase expression/formation protein [Bradyrhizobium japonicum USDA 110] Length = 383 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/380 (86%), Positives = 356/380 (93%) Query: 1 MKYADEFRDKTIAQGLARAIGAEAGPRRAYRFMEFCGGHTHAISRYGLEDLLPANVRMIH 60 +KY+ EFRDKTIAQGLARAI AE +RAYRF+EFCGGHTHAISRYGLEDLLPANVRMIH Sbjct: 4 VKYSSEFRDKTIAQGLARAIDAEVSSQRAYRFVEFCGGHTHAISRYGLEDLLPANVRMIH 63 Query: 61 GPGCPVCVLPASRIDMAVRLAERPEVTLCVYGDLMRAPGSQGQSLMRAKALGADIRMVYS 120 GPGCPVCVLPASRIDMA+RLAERPEV LCVYGDLMRAPGSQGQSL+ AKALGA IRMVYS Sbjct: 64 GPGCPVCVLPASRIDMAIRLAERPEVILCVYGDLMRAPGSQGQSLLLAKALGAHIRMVYS 123 Query: 121 TLDAIRLAEQVPTREVVFFAIGFETTTPPTAVMVRIAEKKRLRGLSVFCNHVLTPSAMHS 180 TLDAIRLAEQ P REVVFFAIGFETTTPPTAVM+RIAE KRL GLSVFCNHVLTPSAMH Sbjct: 124 TLDAIRLAEQTPGREVVFFAIGFETTTPPTAVMIRIAEHKRLEGLSVFCNHVLTPSAMHR 183 Query: 181 ILENPKMRNIGGVAIDGFVGPAHVSTIIGTQPYEPLVEQFGKPIVIAGFEPLDVMQAILM 240 ILENPK+RN GGV IDGF+GPAHVSTI+GTQPYEP+ EQF KPIV+AGFEPLDV+QA+LM Sbjct: 184 ILENPKIRNTGGVPIDGFIGPAHVSTIVGTQPYEPMAEQFEKPIVVAGFEPLDVLQAVLM 243 Query: 241 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA 300 LVRQVN+ R+EVENQYSRAVTR+GNRRAK+EVSQVFELREQFEWRGLGLVPNSGLKLK++ Sbjct: 244 LVRQVNQNRHEVENQYSRAVTREGNRRAKEEVSQVFELREQFEWRGLGLVPNSGLKLKQS 303 Query: 301 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG 360 YA FDAE RFA+H+LRVADNPACECCAILRGAKRP+DCKLFG +CTPETP+G+CMVSSEG Sbjct: 304 YAKFDAETRFAIHDLRVADNPACECCAILRGAKRPIDCKLFGNICTPETPIGACMVSSEG 363 Query: 361 ACAAYWTYGRVRDDQVRRLS 380 ACAAYWTY RVRD+Q R+ S Sbjct: 364 ACAAYWTYRRVRDEQARQTS 383 >ref|NP_773568.1| HypD' protein [Bradyrhizobium japonicum USDA 110] sp|P31904.2|HYPD2_BRAJA RecName: Full=Hydrogenase expression/formation protein hypD2 dbj|BAC52193.1| HypD' protein [Bradyrhizobium japonicum USDA 110] Length = 380 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/380 (81%), Positives = 337/380 (88%) Query: 1 MKYADEFRDKTIAQGLARAIGAEAGPRRAYRFMEFCGGHTHAISRYGLEDLLPANVRMIH 60 MKYADEFRDK IA GLA+AI AEA PR+ YRFMEFCGGHTHAISRYGLED+LP NVRMIH Sbjct: 1 MKYADEFRDKEIALGLAKAIRAEADPRKPYRFMEFCGGHTHAISRYGLEDMLPKNVRMIH 60 Query: 61 GPGCPVCVLPASRIDMAVRLAERPEVTLCVYGDLMRAPGSQGQSLMRAKALGADIRMVYS 120 GPGCPVCVLPA RIDMA+RLAERP++ LCVYGDLMR PGSQG SL++AKA GADIRMVYS Sbjct: 61 GPGCPVCVLPAGRIDMAIRLAERPDIILCVYGDLMRVPGSQGASLLKAKARGADIRMVYS 120 Query: 121 TLDAIRLAEQVPTREVVFFAIGFETTTPPTAVMVRIAEKKRLRGLSVFCNHVLTPSAMHS 180 T+DAIR+AE P REVVFFAIGFETTTPPTAVM+R+A KK+L SVFCNHVLTP AM + Sbjct: 121 TIDAIRIAEDNPGREVVFFAIGFETTTPPTAVMIRLAGKKQLENFSVFCNHVLTPPAMQN 180 Query: 181 ILENPKMRNIGGVAIDGFVGPAHVSTIIGTQPYEPLVEQFGKPIVIAGFEPLDVMQAILM 240 ILE+P +RNIG V IDGFVGPAHVSTIIGT PYE E+FGKP+VIAGFEPLD+MQAILM Sbjct: 181 ILESPDIRNIGRVEIDGFVGPAHVSTIIGTAPYEFFAEEFGKPVVIAGFEPLDMMQAILM 240 Query: 241 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA 300 LVRQVNE R+EVENQYSRAV+R GN RAK+EVS +FELR+QFEWRGLG VP SGLKLKRA Sbjct: 241 LVRQVNEHRHEVENQYSRAVSRDGNLRAKEEVSDIFELRDQFEWRGLGQVPYSGLKLKRA 300 Query: 301 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG 360 YA +DAE RF M+ELRV DNPACEC AILRG K+PVDCKLFGTVCTPETP+GSCMVSSEG Sbjct: 301 YAKYDAEVRFDMNELRVDDNPACECGAILRGVKKPVDCKLFGTVCTPETPMGSCMVSSEG 360 Query: 361 ACAAYWTYGRVRDDQVRRLS 380 ACAA+WTYGR RD Q RR S Sbjct: 361 ACAAHWTYGRFRDHQQRRAS 380 >gb|ABC17841.1| HypD [Bradyrhizobium sp. UPM1029] Length = 380 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/380 (80%), Positives = 336/380 (88%) Query: 1 MKYADEFRDKTIAQGLARAIGAEAGPRRAYRFMEFCGGHTHAISRYGLEDLLPANVRMIH 60 MKYADEFRDK IA GLA+AI AEA P++ YRFMEFCGGHTHAISRYGLED+LP NVRMIH Sbjct: 1 MKYADEFRDKEIALGLAKAIRAEADPQKLYRFMEFCGGHTHAISRYGLEDMLPKNVRMIH 60 Query: 61 GPGCPVCVLPASRIDMAVRLAERPEVTLCVYGDLMRAPGSQGQSLMRAKALGADIRMVYS 120 GPGCPVCVLPA RIDMA+RLAERP+V LCVYGDLMR PGSQG SL++AKA GADIRMVYS Sbjct: 61 GPGCPVCVLPAGRIDMAIRLAERPDVILCVYGDLMRVPGSQGASLLKAKARGADIRMVYS 120 Query: 121 TLDAIRLAEQVPTREVVFFAIGFETTTPPTAVMVRIAEKKRLRGLSVFCNHVLTPSAMHS 180 T+DAIR+AE P REVVFFAIGFETTTPPTAV++R+AEKK+L +VFCNHVLTP AM + Sbjct: 121 TIDAIRIAEDNPGREVVFFAIGFETTTPPTAVLIRLAEKKQLENFTVFCNHVLTPPAMQN 180 Query: 181 ILENPKMRNIGGVAIDGFVGPAHVSTIIGTQPYEPLVEQFGKPIVIAGFEPLDVMQAILM 240 ILE+P +RNIG V IDGFVGPAHVSTIIGT YE E+FGKP+VIAGFEPLD+MQAILM Sbjct: 181 ILESPDIRNIGRVEIDGFVGPAHVSTIIGTASYEFFAEEFGKPVVIAGFEPLDMMQAILM 240 Query: 241 LVRQVNEGRYEVENQYSRAVTRQGNRRAKDEVSQVFELREQFEWRGLGLVPNSGLKLKRA 300 LVRQVNE R+EVENQYSRAV R GN RAK+EVS +FELR+QFEWRGLG VP SGLKLKRA Sbjct: 241 LVRQVNEDRHEVENQYSRAVNRDGNLRAKEEVSNIFELRDQFEWRGLGQVPYSGLKLKRA 300 Query: 301 YAGFDAEARFAMHELRVADNPACECCAILRGAKRPVDCKLFGTVCTPETPVGSCMVSSEG 360 YA +DAE RF MHELRV DNPACEC ILRG K+PVDCKLFGTVCTPETP+GSCMVS+EG Sbjct: 301 YAIYDAEVRFDMHELRVDDNPACECGTILRGVKKPVDCKLFGTVCTPETPMGSCMVSAEG 360 Query: 361 ACAAYWTYGRVRDDQVRRLS 380 ACAA+WTYGR RD Q RR+S Sbjct: 361 ACAAHWTYGRFRDHQQRRVS 380