BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0259.0018.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABC26866.1| HypC [Bradyrhizobium sp. UPM1167]                      143   7e-33
ref|NP_768375.1| hydrogenase maturation protein [Bradyrhizobium ...   123   9e-27
ref|NP_773569.1| hydrogenase expression/formation protein [Brady...   111   3e-23
gb|ABC17840.1| HypC [Bradyrhizobium sp. UPM1029]                      107   4e-22
ref|YP_780176.1| hydrogenase assembly chaperone hypC/hupF [Rhodo...    89   2e-16

>gb|ABC26866.1| HypC [Bradyrhizobium sp. UPM1167]
          Length = 78

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 76/78 (97%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
          MCLSVPAK+SKILPDDMAIVSIDGVSLEISIAL+EELDVGD+VLVHVGYALSKIDP EA 
Sbjct: 1  MCLSVPAKVSKILPDDMAIVSIDGVSLEISIALIEELDVGDSVLVHVGYALSKIDPAEAT 60

Query: 61 RTLELLQELGSAGREPRS 78
          RTLELLQELGSAG+EPR+
Sbjct: 61 RTLELLQELGSAGQEPRT 78


>ref|NP_768375.1| hydrogenase maturation protein [Bradyrhizobium japonicum USDA 110]
 gb|AAG60721.1|AF322012_26 HypF [Bradyrhizobium japonicum]
 dbj|BAC47000.1| hydrogenase maturation protein [Bradyrhizobium japonicum USDA 110]
          Length = 581

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 73/78 (93%), Gaps = 1/78 (1%)

Query: 1   MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
           MCLSVPAKI+KILP++MA+V IDGV+LEISIAL++ELDVGD VLVHVGYAL+KIDP EAK
Sbjct: 505 MCLSVPAKIAKILPNEMALVFIDGVNLEISIALLDELDVGDFVLVHVGYALAKIDPAEAK 564

Query: 61  RTLELLQELGSAGREPRS 78
           RTLELLQELG+A +E RS
Sbjct: 565 RTLELLQELGAA-KECRS 581


>ref|NP_773569.1| hydrogenase expression/formation protein [Bradyrhizobium
          japonicum USDA 110]
 dbj|BAC52194.1| hydrogenase expression/formation protein [Bradyrhizobium
          japonicum USDA 110]
          Length = 78

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 68/74 (91%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
          MCL++PA+++K+LPD+MAIVSIDGVS EIS+AL+E+L VGD V++HVGYAL+KIDP EA+
Sbjct: 1  MCLAIPAEVTKLLPDEMAIVSIDGVSKEISVALIEDLAVGDYVIIHVGYALTKIDPEEAR 60

Query: 61 RTLELLQELGSAGR 74
          RTLELL+EL + G+
Sbjct: 61 RTLELLRELSTEGQ 74


>gb|ABC17840.1| HypC [Bradyrhizobium sp. UPM1029]
          Length = 78

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 67/78 (85%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
          MCL++P +++K+LPD+MAIVSIDGVS EIS+AL+E L VGD V++HVG+AL+KIDP EA 
Sbjct: 1  MCLAIPGEVTKLLPDEMAIVSIDGVSKEISVALIENLAVGDYVIIHVGFALTKIDPEEAM 60

Query: 61 RTLELLQELGSAGREPRS 78
          RTLELL+EL + G++  S
Sbjct: 61 RTLELLRELSAEGQKAAS 78


>ref|YP_780176.1| hydrogenase assembly chaperone hypC/hupF [Rhodopseudomonas
          palustris BisA53]
 gb|ABJ05196.1| hydrogenase assembly chaperone hypC/hupF [Rhodopseudomonas
          palustris BisA53]
          Length = 78

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 60/75 (80%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
          MCL++PA+I ++LP+ MA VS+DGVS ++S+AL+E   +GD V++HVG+AL++ID  EA+
Sbjct: 1  MCLAIPAEIIELLPEQMAKVSLDGVSKQVSVALIENPQLGDYVVLHVGFALARIDTEEAR 60

Query: 61 RTLELLQELGSAGRE 75
          RTL LL ELG+   E
Sbjct: 61 RTLALLDELGNGNTE 75