BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0259.0013.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABC26863.1| HypA [Bradyrhizobium sp. UPM1167]                      191   2e-47
gb|ABC17837.1| HypA [Bradyrhizobium sp. UPM1029]                      162   1e-38
ref|NP_773572.1| HypA protein [Bradyrhizobium japonicum USDA 110...   162   2e-38
ref|NP_768370.1| hydrogenase nickel incorporation protein [Brady...   160   5e-38
ref|YP_001203808.1| hydrogenase expression/formation protein Hyp...   148   3e-34

>gb|ABC26863.1| HypA [Bradyrhizobium sp. UPM1167]
          Length = 113

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/110 (85%), Positives = 101/110 (91%)

Query: 1   MALCQSIVEIVEEEAHRRSFSQVRSVCLEIGALSHVAPEAIRFCFAVVATRTIAEGAAVR 60
           MALCQSI+EIVEEEAHRRSFS VRS+CLEIGALSHVAP+A+RFCF  VATRTIAEGA +R
Sbjct: 4   MALCQSIIEIVEEEAHRRSFSLVRSICLEIGALSHVAPQALRFCFGAVATRTIAEGATLR 63

Query: 61  IIECPGVAWCMTCSKSIEIARRDECCPCCGSYQLQVTAGEEMRVKELEID 110
           IIE PG AWCM+CSKS+EIARR E CP CGSYQLQVTAGEEMRVKELEID
Sbjct: 64  IIERPGEAWCMSCSKSVEIARRGESCPSCGSYQLQVTAGEEMRVKELEID 113


>gb|ABC17837.1| HypA [Bradyrhizobium sp. UPM1029]
          Length = 113

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 91/110 (82%)

Query: 1   MALCQSIVEIVEEEAHRRSFSQVRSVCLEIGALSHVAPEAIRFCFAVVATRTIAEGAAVR 60
           MALC+ IV IVEEEA +R+F++V  VCLEIGALSHVAPEA++FCF  VA RTIA+GA + 
Sbjct: 4   MALCEGIVGIVEEEARKRAFTKVNVVCLEIGALSHVAPEALKFCFEAVAARTIAQGARLE 63

Query: 61  IIECPGVAWCMTCSKSIEIARRDECCPCCGSYQLQVTAGEEMRVKELEID 110
           I+E PG AWCM CSK++EI +R E CP CG YQLQVT GEEMRV+ELE+D
Sbjct: 64  IVETPGTAWCMACSKTVEIGQRYEPCPSCGGYQLQVTGGEEMRVRELEVD 113


>ref|NP_773572.1| HypA protein [Bradyrhizobium japonicum USDA 110]
 sp|Q45256.1|HYPA2_BRAJA RecName: Full=Probable hydrogenase nickel incorporation protein
           hypA 2
 gb|AAA17762.1| HypA [Bradyrhizobium japonicum]
 dbj|BAC52197.1| HypA protein [Bradyrhizobium japonicum USDA 110]
          Length = 113

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 91/110 (82%)

Query: 1   MALCQSIVEIVEEEAHRRSFSQVRSVCLEIGALSHVAPEAIRFCFAVVATRTIAEGAAVR 60
           MALC+ I+ IVEEEA +R+F++V  VCLEIGALSHVAPEA++FCF  VA RTIA+GA + 
Sbjct: 4   MALCEGIIGIVEEEARKRAFAKVNVVCLEIGALSHVAPEALQFCFEAVAARTIAQGAKLE 63

Query: 61  IIECPGVAWCMTCSKSIEIARRDECCPCCGSYQLQVTAGEEMRVKELEID 110
           I+E PG AWCM CSKS+EI +R E CP CG YQLQVT GEEMRV+ELE+D
Sbjct: 64  IVETPGTAWCMACSKSVEIKQRYEPCPSCGGYQLQVTGGEEMRVRELEVD 113


>ref|NP_768370.1| hydrogenase nickel incorporation protein [Bradyrhizobium japonicum
           USDA 110]
 sp|Q9ANP8.1|HYPA1_BRAJA RecName: Full=Probable hydrogenase nickel incorporation protein
           hypA 1
 gb|AAG60715.1|AF322012_20 HypA [Bradyrhizobium japonicum]
 dbj|BAC46995.1| hydrogenase nickel incorporation protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 113

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 96/110 (87%)

Query: 1   MALCQSIVEIVEEEAHRRSFSQVRSVCLEIGALSHVAPEAIRFCFAVVATRTIAEGAAVR 60
           MA+C  I++IVEE+   RS S+VRSVCLE+G LSH APEAIRFCFAV A RT+AEGAA+ 
Sbjct: 4   MAICMGIIQIVEEKVRERSSSRVRSVCLELGTLSHAAPEAIRFCFAVAAMRTVAEGAALN 63

Query: 61  IIECPGVAWCMTCSKSIEIARRDECCPCCGSYQLQVTAGEEMRVKELEID 110
           I+E PGVAWCM+CSKS+EIARR +CCPCCGSYQLQVTAGE+MRVK LEID
Sbjct: 64  IVELPGVAWCMSCSKSVEIARRGDCCPCCGSYQLQVTAGEQMRVKALEID 113


>ref|YP_001203808.1| hydrogenase expression/formation protein HypA [Bradyrhizobium sp.
           ORS 278]
 sp|A4YNU5.1|HYPA_BRASO RecName: Full=Probable hydrogenase nickel incorporation protein
           hypA
 emb|CAL75571.1| hydrogenase expression/formation protein HypA [Bradyrhizobium sp.
           ORS 278]
          Length = 113

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 89/110 (80%)

Query: 1   MALCQSIVEIVEEEAHRRSFSQVRSVCLEIGALSHVAPEAIRFCFAVVATRTIAEGAAVR 60
           MALC+ IVEIVE EA + +FS+V++V LEIGALSHVAPEA+RFCF  V   TIA GAA+ 
Sbjct: 4   MALCEGIVEIVEAEARKGAFSKVKTVWLEIGALSHVAPEALRFCFEAVTAHTIARGAALE 63

Query: 61  IIECPGVAWCMTCSKSIEIARRDECCPCCGSYQLQVTAGEEMRVKELEID 110
           IIE  G AWC+ CS+S+EI+RR + C  CGS+QLQVT GE+MRVKELE++
Sbjct: 64  IIEQKGSAWCLGCSRSVEISRRYDACSECGSHQLQVTGGEDMRVKELEVE 113