BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0259.0009.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABC26859.1| HupG [Bradyrhizobium sp. UPM1167]                      120   5e-26
ref|YP_001203803.1| hydrogenase expression/formation protein hup...    52   2e-05
gb|AAA50822.1| HupG [Bradyrhizobium japonicum]                         50   1e-04
emb|CAA79946.1| hupG [Bradyrhizobium japonicum]                        46   0.002
ref|NP_773577.1| HupG protein [Bradyrhizobium japonicum USDA 110...    46   0.002

>gb|ABC26859.1| HupG [Bradyrhizobium sp. UPM1167]
          Length = 147

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 77/112 (68%)

Query: 1   VELLSAAGPVNSLWANHVANALSEQIKAHRRPMQGGATARGAGSELGGRLGLRGPPTQIE 60
           VEL SAAGP+ S WA HVA ALSEQ KA RRP+Q   TAR AG E GGRLGLRGPP   E
Sbjct: 36  VELPSAAGPLYSRWAIHVATALSEQTKALRRPVQRVVTARSAGGEPGGRLGLRGPPRPTE 95

Query: 61  CHQRGTLRRVGKSQIRLVKVDRISAPIVGPHAGGDCTADSIASRRAPRNFAS 112
           C QR TLR VG+SQ+RL K+  +SA IV P AG    A+SIA R   RN  S
Sbjct: 96  CPQRATLRLVGESQVRLDKIAPMSASIVRPQAGTAWIANSIAIRHVHRNVGS 147


>ref|YP_001203803.1| hydrogenase expression/formation protein hupG [Bradyrhizobium sp.
           ORS 278]
 emb|CAL75566.1| Hydrogenase expression/formation protein hupG [Bradyrhizobium sp.
           ORS 278]
          Length = 148

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 40/82 (48%)

Query: 3   LLSAAGPVNSLWANHVANALSEQIKAHRRPMQGGATARGAGSELGGRLGLRGPPTQIECH 62
           LLSA  P     A  VA  L E I A    +QG    R A +ELG R G+R  P+ I C 
Sbjct: 39  LLSAGDPARFPEAMDVAIVLPELITAFHGRLQGAVIERDAEAELGARFGVRVQPSLIFCR 98

Query: 63  QRGTLRRVGKSQIRLVKVDRIS 84
              TL  + K Q   V VDRIS
Sbjct: 99  GSETLGVIAKIQDWSVYVDRIS 120


>gb|AAA50822.1| HupG [Bradyrhizobium japonicum]
          Length = 148

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 46/99 (46%)

Query: 3   LLSAAGPVNSLWANHVANALSEQIKAHRRPMQGGATARGAGSELGGRLGLRGPPTQIECH 62
           LLSA  P     A  VA  L E I A    ++G   ARG  S LG R G+R  PT I   
Sbjct: 39  LLSAGDPNRFPEATDVAVVLPELIAAFGGRLRGAVIARGDESALGQRFGVRVQPTLIFVA 98

Query: 63  QRGTLRRVGKSQIRLVKVDRISAPIVGPHAGGDCTADSI 101
           +  TL  + K Q   V VDRI+  I  P       AD+I
Sbjct: 99  KGETLGLIAKIQDWSVYVDRITKLIDRPRGQSAAVADTI 137


>emb|CAA79946.1| hupG [Bradyrhizobium japonicum]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 45/99 (45%)

Query: 3   LLSAAGPVNSLWANHVANALSEQIKAHRRPMQGGATARGAGSELGGRLGLRGPPTQIECH 62
           LLSA  P     A  VA  L E I A    ++G   ARG  S LG R G+R  PT I   
Sbjct: 39  LLSAGDPNRFPEATDVAVVLPELIAAFGGRLRGAVIARGDESALGQRFGVRVQPTLIFVA 98

Query: 63  QRGTLRRVGKSQIRLVKVDRISAPIVGPHAGGDCTADSI 101
           +  TL  + K Q   V VDRI+  I  P       A +I
Sbjct: 99  KGETLGLIAKIQDWSVYVDRITKLIDRPRGQSAAVAVTI 137


>ref|NP_773577.1| HupG protein [Bradyrhizobium japonicum USDA 110]
 sp|P48339.2|HUPG_BRAJA RecName: Full=Hydrogenase expression/formation protein hupG
 dbj|BAC52202.1| HupG protein [Bradyrhizobium japonicum USDA 110]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 42/88 (47%)

Query: 3   LLSAAGPVNSLWANHVANALSEQIKAHRRPMQGGATARGAGSELGGRLGLRGPPTQIECH 62
           LLSA  P     A  VA  L E I A    ++G   ARG  S LG R G+R  PT I   
Sbjct: 39  LLSAGDPNRFPEATDVAVVLPELIAAFGGRLRGAVIARGDESALGQRFGVRVQPTLIFVA 98

Query: 63  QRGTLRRVGKSQIRLVKVDRISAPIVGP 90
           +  TL  + K Q   V VDRI+  I  P
Sbjct: 99  KGETLGLIAKIQDWSVYVDRITKLIDRP 126