BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0259.0006.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABC26856.1| HupC [Bradyrhizobium sp. UPM1167] 377 e-103 ref|NP_768362.1| i/Fe-hydrogenase B-type cytochrome subunit [Bra... 334 5e-90 ref|NP_773580.1| HupC protein [Bradyrhizobium japonicum USDA 110... 300 1e-79 gb|ABC17829.1| HupC [Bradyrhizobium sp. UPM1029] 300 1e-79 ref|YP_001238095.1| Ni/Fe-hydrogenase, 1 b-type cytochrome subun... 295 3e-78 >gb|ABC26856.1| HupC [Bradyrhizobium sp. UPM1167] Length = 236 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/233 (84%), Positives = 207/233 (88%), Gaps = 4/233 (1%) Query: 3 DKAPQNPTAVDAPPTVSGGGGGAAYVYEAPVRLWHWVNAAAILVLGVTGYLIGTGTPATP 62 DKAP+ VDA PTV G AAYVYEAPVRLWH NA AILVLG+TG+LIGTGTPA P Sbjct: 8 DKAPKAVAVVDAAPTVHG----AAYVYEAPVRLWHAGNAVAILVLGITGHLIGTGTPAMP 63 Query: 63 GEASGNFLFGYIRFAHFSAGYVLGVGFLLRIYWALMGNPHAMQIFRVPLWRSCIWREVYD 122 GEAS NFLFGYIRFAHF AGYVLGVGF+LRIYWALMGNPHAMQIF VPLWR C WREVYD Sbjct: 64 GEASDNFLFGYIRFAHFLAGYVLGVGFMLRIYWALMGNPHAMQIFCVPLWRRCFWREVYD 123 Query: 123 EMRWYAFLAVEPDRRVGHNRLAQLAMFFMFTQTITFMIVTGFALYGQGAGRDSWQYKLFG 182 EMRWYAFLA EP+R VGHNRLAQLAMFFMFTQT TFMIVTGFALYGQG GRDSWQYK FG Sbjct: 124 EMRWYAFLAAEPERHVGHNRLAQLAMFFMFTQTTTFMIVTGFALYGQGVGRDSWQYKSFG 183 Query: 183 WVFAIWPNSQDVHTWHHLGLWIVVTFALVHIYAVIREDIMSGRSISSMISGQR 235 WVFAIWPN QD+ TWHHLGLW++VTFA+VHIYAVIREDIMSGRSISSMISGQR Sbjct: 184 WVFAIWPNGQDIRTWHHLGLWVIVTFAMVHIYAVIREDIMSGRSISSMISGQR 236 >ref|NP_768362.1| i/Fe-hydrogenase B-type cytochrome subunit [Bradyrhizobium japonicum USDA 110] gb|AAG60705.1|AF322012_10 HupC [Bradyrhizobium japonicum] dbj|BAC46987.1| hupC [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 163/208 (78%), Positives = 183/208 (87%), Gaps = 1/208 (0%) Query: 23 GGAAYVYEAPVRLWHWVNAAAILVLGVTGYLIGTGTPATPGEASGNFLFGYIRFAHFSAG 82 GG A++Y A VRLWHW NAAAILVL +TGYLIGTGTPA G ASG FLFGYIRFAHFSAG Sbjct: 37 GGTAHIY-ALVRLWHWANAAAILVLSLTGYLIGTGTPAIWGMASGGFLFGYIRFAHFSAG 95 Query: 83 YVLGVGFLLRIYWALMGNPHAMQIFRVPLWRSCIWREVYDEMRWYAFLAVEPDRRVGHNR 142 YVL GFLLRIYWALMGN HAMQIF VPLWR C WRE++ E+R Y+FLAVEP+R +GHNR Sbjct: 96 YVLSAGFLLRIYWALMGNAHAMQIFCVPLWRRCFWRELHHEIRRYSFLAVEPERGLGHNR 155 Query: 143 LAQLAMFFMFTQTITFMIVTGFALYGQGAGRDSWQYKLFGWVFAIWPNSQDVHTWHHLGL 202 LAQLAMFFMFTQTITFM+VTGFALYGQGAG DSWQYK+FGWVF++WPNSQD HTWHHLGL Sbjct: 156 LAQLAMFFMFTQTITFMVVTGFALYGQGAGTDSWQYKVFGWVFSLWPNSQDFHTWHHLGL 215 Query: 203 WIVVTFALVHIYAVIREDIMSGRSISSM 230 W++V FALVHIYAV+ +D++S RS S+ Sbjct: 216 WVIVMFALVHIYAVLWDDVVSRRSFPSI 243 >ref|NP_773580.1| HupC protein [Bradyrhizobium japonicum USDA 110] sp|P21960.3|CYBH_BRAJA RecName: Full=Probable Ni/Fe-hydrogenase B-type cytochrome subunit gb|AAD13468.1| HupC [Bradyrhizobium japonicum] dbj|BAC52205.1| HupC protein [Bradyrhizobium japonicum USDA 110] Length = 247 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 176/246 (71%), Gaps = 7/246 (2%) Query: 1 MADKAPQNPTAVDAPPTVSGGGGGAA------YVYEAPVRLWHWVNAAAILVLGVTGYLI 54 M AP + D + G A YVYEAPVR+ HWVNA +I+VL VTGYLI Sbjct: 2 MDAVAPASDAGPDLAAIAADASGERAVGRPTVYVYEAPVRICHWVNAFSIIVLMVTGYLI 61 Query: 55 GTGTPATPGEASGNFLFGYIRFAHFSAGYVLGVGFLLRIYWALMGNPHAMQIFRVPLWRS 114 GT P GEAS NF+ GYIRFAHF+AG VL V FL RI WA +GN H+ QIF +P+ R Sbjct: 62 GTPLPTVAGEASDNFVMGYIRFAHFAAGQVLAVFFLTRILWAFVGNHHSRQIFYIPVHRK 121 Query: 115 CIWREVYDEMRWYAFLAVEPDRRVGHNRLAQLAMFFMFTQTITFMIVTGFALYGQGAGRD 174 W+EV E+RWYAFL EP VGHN LAQ AMF FT + FMIVTGFALY +G G D Sbjct: 122 QFWKEVLHEIRWYAFLEREPKMYVGHNPLAQTAMFTGFTLFVAFMIVTGFALYSEGQGID 181 Query: 175 SWQYKLFGWVFAIWPNSQDVHTWHHLGLWIVVTFALVHIYAVIREDIMSGRS-ISSMISG 233 SWQ+KLFGWVFAIWPNSQDVHTWHHLG+W +V F +VHIYA +REDIMS +S ISSMISG Sbjct: 182 SWQHKLFGWVFAIWPNSQDVHTWHHLGMWALVVFVMVHIYAAVREDIMSRQSIISSMISG 241 Query: 234 QRQFRD 239 +RQFRD Sbjct: 242 ERQFRD 247 >gb|ABC17829.1| HupC [Bradyrhizobium sp. UPM1029] Length = 247 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 148/219 (67%), Positives = 169/219 (77%), Gaps = 1/219 (0%) Query: 22 GGGAAYVYEAPVRLWHWVNAAAILVLGVTGYLIGTGTPATPGEASGNFLFGYIRFAHFSA 81 G + YVYEAPVR+ HWVNA +I+VL VTGYLIGT P GEAS NF+ GYIRFAHF+A Sbjct: 29 GRPSVYVYEAPVRICHWVNAFSIIVLMVTGYLIGTSLPTVAGEASDNFVMGYIRFAHFAA 88 Query: 82 GYVLGVGFLLRIYWALMGNPHAMQIFRVPLWRSCIWREVYDEMRWYAFLAVEPDRRVGHN 141 G VL V FL RI W +GN H+ QIF +P+ R+ W+E E+RWYAFL EP VGHN Sbjct: 89 GQVLAVFFLTRILWVFVGNHHSRQIFYIPVHRNQFWKEALHEIRWYAFLEREPKMHVGHN 148 Query: 142 RLAQLAMFFMFTQTITFMIVTGFALYGQGAGRDSWQYKLFGWVFAIWPNSQDVHTWHHLG 201 LAQ AMF FT + FMIVTGFALY +G G DSWQ+KLFGWVFAIWPNSQDVHTWHHLG Sbjct: 149 PLAQTAMFTGFTLFVAFMIVTGFALYSEGQGIDSWQHKLFGWVFAIWPNSQDVHTWHHLG 208 Query: 202 LWIVVTFALVHIYAVIREDIMSGRSI-SSMISGQRQFRD 239 +W +V F +VHIYA IREDIMS +SI SSMISG+RQFRD Sbjct: 209 MWALVVFVMVHIYAAIREDIMSRQSIVSSMISGERQFRD 247 >ref|YP_001238095.1| Ni/Fe-hydrogenase, 1 b-type cytochrome subunit [Bradyrhizobium sp. BTAi1] gb|ABQ34189.1| Ni/Fe-hydrogenase, 1 b-type cytochrome subunit [Bradyrhizobium sp. BTAi1] Length = 247 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/219 (67%), Positives = 169/219 (77%), Gaps = 1/219 (0%) Query: 22 GGGAAYVYEAPVRLWHWVNAAAILVLGVTGYLIGTGTPATPGEASGNFLFGYIRFAHFSA 81 G YVYEAPVR+ HWVNA AI+VL VTGYLIGT P+ GEAS +F+ GYIRFAHF+A Sbjct: 29 GRPTVYVYEAPVRICHWVNAFAIIVLMVTGYLIGTPLPSVEGEASASFVMGYIRFAHFAA 88 Query: 82 GYVLGVGFLLRIYWALMGNPHAMQIFRVPLWRSCIWREVYDEMRWYAFLAVEPDRRVGHN 141 G VL V FL RI WA +GN H+ QIF +P+ R W+EV E+RWYAFL EP VGHN Sbjct: 89 GQVLAVFFLARILWAFVGNHHSRQIFYIPVHRKQFWKEVLHEIRWYAFLEREPKMYVGHN 148 Query: 142 RLAQLAMFFMFTQTITFMIVTGFALYGQGAGRDSWQYKLFGWVFAIWPNSQDVHTWHHLG 201 LAQ AMF FT + FMIVTGFALY +G G DSWQ+KLFGWVFAIWPNSQDVHT+HHLG Sbjct: 149 PLAQTAMFTGFTLFVAFMIVTGFALYSEGTGIDSWQHKLFGWVFAIWPNSQDVHTYHHLG 208 Query: 202 LWIVVTFALVHIYAVIREDIMSGRS-ISSMISGQRQFRD 239 +W +V F VH+YA IREDIMS +S ISSMISG+RQFR+ Sbjct: 209 MWALVMFVTVHVYAAIREDIMSRQSIISSMISGERQFRE 247