BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0041.p (438 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_947129.1| TRAP dicarboxylate family transporter DctM subu... 778 0.0 ref|YP_001990984.1| TRAP dicarboxylate transporter subunit DctM ... 776 0.0 ref|YP_004110046.1| TRAP dicarboxylate transporter subunit DctM ... 761 0.0 ref|YP_487186.1| TRAP dicarboxylate transporter DctM subunit [Rh... 751 0.0 ref|YP_782714.1| TRAP C4-dicarboxylate transport system permease... 748 0.0 >ref|NP_947129.1| TRAP dicarboxylate family transporter DctM subunit [Rhodopseudomonas palustris CGA009] emb|CAE27225.1| TrapT family, dctM subunit, C4-dicarboxylate transport [Rhodopseudomonas palustris CGA009] Length = 435 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/434 (92%), Positives = 415/434 (95%) Query: 5 LSPETVAVIGFVSLFVLMLLRVPVGMAMGLVGITGFGYLTGFAPALKLVGQTTMRTVTDY 64 L+ ETVA IGFVSLFVLMLLRVPVGMAMGLVG+TGFGYLTGF PALKLVGQTTMRTVTDY Sbjct: 2 LTNETVAAIGFVSLFVLMLLRVPVGMAMGLVGVTGFGYLTGFEPALKLVGQTTMRTVTDY 61 Query: 65 SFGVIPMFLLMGAFVSVSGISRELFRAANTFVGHWKGGLGIATIAACGGFAAISGSSVAT 124 SFGVIPMFLLMGAFVS SGISRELFRA NT VGHWKGGLGIATIAACGGFAAISGSSVAT Sbjct: 62 SFGVIPMFLLMGAFVSASGISRELFRAGNTIVGHWKGGLGIATIAACGGFAAISGSSVAT 121 Query: 125 AATFSAVAYPEMRRFGYPQSFAAGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 184 AATFSAVAYPEMRRFGYPQSF+ GVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG Sbjct: 122 AATFSAVAYPEMRRFGYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 181 Query: 185 VVPGLLAIVMHMITIGIIGVTRPGFLPAGKKASWHERFVALRDVWSPLLLFLFVIGGLYG 244 ++PGLLAIVMHMITI IIGV RPGFLPAG K+SW +R A RDVWSPLLLFLFVIGGLYG Sbjct: 182 ILPGLLAIVMHMITIWIIGVARPGFLPAGPKSSWGDRLAAFRDVWSPLLLFLFVIGGLYG 241 Query: 245 GFFVPTEAGAVGAVGAFIIGILRGKLTREGILQSLLQATRTAAAVFTVLIGALCFGYFLT 304 GFF+PTEAGAVGAVGAF+IGILRGKL REGILQSLLQATRTAAAVFTVLIGALCFGYFLT Sbjct: 242 GFFIPTEAGAVGAVGAFLIGILRGKLDREGILQSLLQATRTAAAVFTVLIGALCFGYFLT 301 Query: 305 ITQTPQHVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD 364 ITQTPQ+VTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD Sbjct: 302 ITQTPQYVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD 361 Query: 365 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVNMSTIFVGVLPFVITDLIRLVILIL 424 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDV+MST+F GVLPFV+TDLIRLVILI Sbjct: 362 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVSMSTVFAGVLPFVVTDLIRLVILIA 421 Query: 425 FPLLATWLPQRMIG 438 FP++A WLP RMIG Sbjct: 422 FPIIALWLPMRMIG 435 >ref|YP_001990984.1| TRAP dicarboxylate transporter subunit DctM [Rhodopseudomonas palustris TIE-1] gb|ACF00509.1| TRAP dicarboxylate transporter, DctM subunit [Rhodopseudomonas palustris TIE-1] Length = 435 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/434 (91%), Positives = 415/434 (95%) Query: 5 LSPETVAVIGFVSLFVLMLLRVPVGMAMGLVGITGFGYLTGFAPALKLVGQTTMRTVTDY 64 L+ ETVA IGFVSLFVLMLLRVPVGMAMGLVG++GFGYLTGF PALKLVGQTTMRTVTDY Sbjct: 2 LTNETVAAIGFVSLFVLMLLRVPVGMAMGLVGVSGFGYLTGFEPALKLVGQTTMRTVTDY 61 Query: 65 SFGVIPMFLLMGAFVSVSGISRELFRAANTFVGHWKGGLGIATIAACGGFAAISGSSVAT 124 SFGVIPMFLLMGAFVS SGISRELFRA NT VGHWKGGLGIATIAACGGFAAISGSSVAT Sbjct: 62 SFGVIPMFLLMGAFVSASGISRELFRAGNTIVGHWKGGLGIATIAACGGFAAISGSSVAT 121 Query: 125 AATFSAVAYPEMRRFGYPQSFAAGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 184 AATFSAVAYPEMRRFGYPQSF+ GVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG Sbjct: 122 AATFSAVAYPEMRRFGYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 181 Query: 185 VVPGLLAIVMHMITIGIIGVTRPGFLPAGKKASWHERFVALRDVWSPLLLFLFVIGGLYG 244 ++PGLLAIVMHMITI IIGV RPGFLPAG K+SW +R A RDVWSPLLLFLFVIGGLYG Sbjct: 182 ILPGLLAIVMHMITIWIIGVARPGFLPAGPKSSWGDRLAAFRDVWSPLLLFLFVIGGLYG 241 Query: 245 GFFVPTEAGAVGAVGAFIIGILRGKLTREGILQSLLQATRTAAAVFTVLIGALCFGYFLT 304 GFF+PTEAGAVGAVGAF+IGILRGKL R+GILQSLLQATRTAAAVFTVLIGALCFGYFLT Sbjct: 242 GFFIPTEAGAVGAVGAFLIGILRGKLDRDGILQSLLQATRTAAAVFTVLIGALCFGYFLT 301 Query: 305 ITQTPQHVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD 364 ITQTPQ+VTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD Sbjct: 302 ITQTPQYVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD 361 Query: 365 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVNMSTIFVGVLPFVITDLIRLVILIL 424 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDV+MST+F GVLPFV+TDLIRLVILI Sbjct: 362 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVSMSTVFAGVLPFVVTDLIRLVILIA 421 Query: 425 FPLLATWLPQRMIG 438 FP++A WLP RMIG Sbjct: 422 FPIIALWLPMRMIG 435 >ref|YP_004110046.1| TRAP dicarboxylate transporter subunit DctM [Rhodopseudomonas palustris DX-1] gb|ADU45313.1| TRAP dicarboxylate transporter, DctM subunit [Rhodopseudomonas palustris DX-1] Length = 435 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/434 (88%), Positives = 412/434 (94%) Query: 5 LSPETVAVIGFVSLFVLMLLRVPVGMAMGLVGITGFGYLTGFAPALKLVGQTTMRTVTDY 64 LS ETVAVIGFV LFVLMLLRVPVGMAMGLVG+TGFGYLTG PALKLVGQTTMRTVTDY Sbjct: 2 LSNETVAVIGFVILFVLMLLRVPVGMAMGLVGVTGFGYLTGLEPALKLVGQTTMRTVTDY 61 Query: 65 SFGVIPMFLLMGAFVSVSGISRELFRAANTFVGHWKGGLGIATIAACGGFAAISGSSVAT 124 SFGVIPMFLLMGAFVS SGISRELFRA NTFVGHWKGGLGIATI ACGGFAAISGSSVAT Sbjct: 62 SFGVIPMFLLMGAFVSASGISRELFRAGNTFVGHWKGGLGIATIGACGGFAAISGSSVAT 121 Query: 125 AATFSAVAYPEMRRFGYPQSFAAGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 184 AATFSAVAYPEMRR+GYPQSF+ GVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG Sbjct: 122 AATFSAVAYPEMRRYGYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 181 Query: 185 VVPGLLAIVMHMITIGIIGVTRPGFLPAGKKASWHERFVALRDVWSPLLLFLFVIGGLYG 244 ++PGLLAIVMHMITI IIGV RPGFLPAG K+SW +R A RDVWSPLLLF+FVIGGLYG Sbjct: 182 ILPGLLAIVMHMITIWIIGVARPGFLPAGPKSSWSDRLAAFRDVWSPLLLFVFVIGGLYG 241 Query: 245 GFFVPTEAGAVGAVGAFIIGILRGKLTREGILQSLLQATRTAAAVFTVLIGALCFGYFLT 304 GFF+PTEAGAVGAVGAF+IG+ RGKL+R+GILQSLLQATRTAAAVFT+LIGA+CFGYFLT Sbjct: 242 GFFIPTEAGAVGAVGAFLIGVARGKLSRDGILQSLLQATRTAAAVFTILIGAICFGYFLT 301 Query: 305 ITQTPQHVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD 364 ITQTPQH+TEFLTGLGIGPYGVLALIL+MYLVLGC+MDAMAMVILTVPIVFP++TALGFD Sbjct: 302 ITQTPQHITEFLTGLGIGPYGVLALILVMYLVLGCVMDAMAMVILTVPIVFPLITALGFD 361 Query: 365 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVNMSTIFVGVLPFVITDLIRLVILIL 424 PIWFGI+IVMTVELGLI PPVGMNVFVIKSVIKDV+MST+F GV PFVITDLIRL+ILI Sbjct: 362 PIWFGIVIVMTVELGLISPPVGMNVFVIKSVIKDVSMSTVFKGVAPFVITDLIRLMILIA 421 Query: 425 FPLLATWLPQRMIG 438 FP++A WLP RMIG Sbjct: 422 FPIIAVWLPMRMIG 435 >ref|YP_487186.1| TRAP dicarboxylate transporter DctM subunit [Rhodopseudomonas palustris HaA2] gb|ABD08275.1| TRAP dicarboxylate transporter DctM subunit [Rhodopseudomonas palustris HaA2] Length = 436 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/436 (85%), Positives = 412/436 (94%) Query: 3 LDLSPETVAVIGFVSLFVLMLLRVPVGMAMGLVGITGFGYLTGFAPALKLVGQTTMRTVT 62 + + + VA+IGFVSLF LMLLRVP+GMAMGLVGITGFGYLTGF PALKL+GQTTMRTVT Sbjct: 1 MTMDNDVVALIGFVSLFALMLLRVPIGMAMGLVGITGFGYLTGFEPALKLIGQTTMRTVT 60 Query: 63 DYSFGVIPMFLLMGAFVSVSGISRELFRAANTFVGHWKGGLGIATIAACGGFAAISGSSV 122 DYSFGVIPMFLLMGAFVSVSGISRELFRA TFVGHW+GGLGIATIAACGGFAAISGSSV Sbjct: 61 DYSFGVIPMFLLMGAFVSVSGISRELFRAGYTFVGHWRGGLGIATIAACGGFAAISGSSV 120 Query: 123 ATAATFSAVAYPEMRRFGYPQSFAAGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFI 182 ATAATFS+VAYPEMRR+ YPQSF+ GVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLF+ Sbjct: 121 ATAATFSSVAYPEMRRYNYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFM 180 Query: 183 AGVVPGLLAIVMHMITIGIIGVTRPGFLPAGKKASWHERFVALRDVWSPLLLFLFVIGGL 242 AG+VPGLLAI+MHMITI +IGV RPG+LP ++SW +R +A RDVWSPLLLF+FVIGGL Sbjct: 181 AGIVPGLLAIIMHMITIAVIGVARPGYLPTAPRSSWRDRMLAFRDVWSPLLLFIFVIGGL 240 Query: 243 YGGFFVPTEAGAVGAVGAFIIGILRGKLTREGILQSLLQATRTAAAVFTVLIGALCFGYF 302 YGGFF+PTEAGAVGAVGAF+IGI RGKLTR+GILQSLLQATRTAAAVFTVLIGALCFGYF Sbjct: 241 YGGFFIPTEAGAVGAVGAFLIGIARGKLTRDGILQSLLQATRTAAAVFTVLIGALCFGYF 300 Query: 303 LTITQTPQHVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALG 362 LTITQTPQ +TEFLTGLG+GPYGVLALIL+MYLVLGC+MDAMAMVILTVPIVFPV+T+LG Sbjct: 301 LTITQTPQAITEFLTGLGLGPYGVLALILVMYLVLGCVMDAMAMVILTVPIVFPVITSLG 360 Query: 363 FDPIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVNMSTIFVGVLPFVITDLIRLVIL 422 FDPIWFG+I+V+TVELGLI PPVGMNVFVIKSVIKDV+M T+F GV PFV+TD+IRLVIL Sbjct: 361 FDPIWFGVIVVVTVELGLISPPVGMNVFVIKSVIKDVSMGTVFRGVAPFVVTDVIRLVIL 420 Query: 423 ILFPLLATWLPQRMIG 438 ILFP+LATWLPQRM+G Sbjct: 421 ILFPILATWLPQRMVG 436 >ref|YP_782714.1| TRAP C4-dicarboxylate transport system permease DctM [Rhodopseudomonas palustris BisA53] gb|ABJ07734.1| TRAP dicarboxylate transporter, DctM subunit [Rhodopseudomonas palustris BisA53] Length = 434 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/434 (89%), Positives = 412/434 (94%) Query: 5 LSPETVAVIGFVSLFVLMLLRVPVGMAMGLVGITGFGYLTGFAPALKLVGQTTMRTVTDY 64 +S E VA+ GF SLF LMLLRVPVGMAMGLVGITGFGYLTGF PALKLVGQTTMRTVTDY Sbjct: 1 MSNEAVALTGFASLFALMLLRVPVGMAMGLVGITGFGYLTGFQPALKLVGQTTMRTVTDY 60 Query: 65 SFGVIPMFLLMGAFVSVSGISRELFRAANTFVGHWKGGLGIATIAACGGFAAISGSSVAT 124 SFGVIPMFLLMGAFVSVSGISRELFRA T VGHWKGGLGIATIAACGGFAAISGSSVAT Sbjct: 61 SFGVIPMFLLMGAFVSVSGISRELFRAGYTIVGHWKGGLGIATIAACGGFAAISGSSVAT 120 Query: 125 AATFSAVAYPEMRRFGYPQSFAAGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 184 AATFSAVAYPEMRRF YPQSFA GVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG Sbjct: 121 AATFSAVAYPEMRRFNYPQSFATGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFIAG 180 Query: 185 VVPGLLAIVMHMITIGIIGVTRPGFLPAGKKASWHERFVALRDVWSPLLLFLFVIGGLYG 244 +VPG+LAIVMH++TI IIGV RPGFLPAG ++SW ER +A RDVWSPLLLF+FVIGGLYG Sbjct: 181 IVPGMLAIVMHIVTIAIIGVARPGFLPAGPRSSWRERLLAFRDVWSPLLLFVFVIGGLYG 240 Query: 245 GFFVPTEAGAVGAVGAFIIGILRGKLTREGILQSLLQATRTAAAVFTVLIGALCFGYFLT 304 GFF+PTEAGAVGAVGAFIIG+ RGKL+R+GILQSLLQATRTAAAVFTVLIGA+CFGYFLT Sbjct: 241 GFFIPTEAGAVGAVGAFIIGVARGKLSRDGILQSLLQATRTAAAVFTVLIGAICFGYFLT 300 Query: 305 ITQTPQHVTEFLTGLGIGPYGVLALILLMYLVLGCLMDAMAMVILTVPIVFPVVTALGFD 364 ITQTPQ +TEFLTGLGIGPYGVLALILLMYLVLGC+MDAMAMVILTVPIVFPVVTALGFD Sbjct: 301 ITQTPQAITEFLTGLGIGPYGVLALILLMYLVLGCVMDAMAMVILTVPIVFPVVTALGFD 360 Query: 365 PIWFGIIIVMTVELGLIHPPVGMNVFVIKSVIKDVNMSTIFVGVLPFVITDLIRLVILIL 424 PIWFGI+IVMTVELGLI PPVGMNVFVIKSVIKDV+MST+F GVLPFV+TDLIRL+ILIL Sbjct: 361 PIWFGIVIVMTVELGLISPPVGMNVFVIKSVIKDVSMSTVFKGVLPFVVTDLIRLIILIL 420 Query: 425 FPLLATWLPQRMIG 438 FP +ATWLPQRMIG Sbjct: 421 FPWIATWLPQRMIG 434