BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0258.0040.p         (188 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_947128.1| TRAP dicarboxylate family transporter subunit D...   281   2e-74
ref|YP_001990983.1| Tripartite ATP-independent periplasmic trans...   281   3e-74
ref|YP_004110047.1| TRAP dicarboxylate transporter subunit DctQ ...   280   9e-74
ref|YP_487187.1| TRAP dicarboxylate family transporter DctQ subu...   278   3e-73
ref|YP_782715.1| TRAP dicarboxylate family transporter subunit D...   276   8e-73

>ref|NP_947128.1| TRAP dicarboxylate family transporter subunit DctQ
           [Rhodopseudomonas palustris CGA009]
 emb|CAE27224.1| possible TrapT family, dctQ subunit, C4-dicarboxylate transport
           [Rhodopseudomonas palustris CGA009]
          Length = 217

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 153/167 (91%)

Query: 22  KNFMDRFIDSIEWVAAFFVGVVALNTFTAVFMRKFFAVTIPDYYNFGQFLLGILIFWGIA 81
           KN MDRFID+IEW+AAFFVG+VALNTF AVFMRKFF+VTIPDYYNFGQF+LG+LIFWGIA
Sbjct: 51  KNGMDRFIDAIEWIAAFFVGIVALNTFLAVFMRKFFSVTIPDYYNFGQFMLGVLIFWGIA 110

Query: 82  ATSYRGTHITVDLVWANASPRYQRWIDIFATLVLLFVVSVQTYTLVDKVIDTRNSHIVTM 141
           ATSYRG+HITVDLVWA ASPR+QR IDIFATLVLLFVVSVQTYTL DKV+ T+  HIVTM
Sbjct: 111 ATSYRGSHITVDLVWAAASPRWQRIIDIFATLVLLFVVSVQTYTLFDKVVTTKADHIVTM 170

Query: 142 DLGVPVWPFFLVSWIGDVSAVLLIAIRTYRLIFHPEDIHDAKIKTAE 188
           DL +P+WPF+LVSWIGDVSAVLLIAIRT+RLIFHPE + + ++K  E
Sbjct: 171 DLQIPIWPFYLVSWIGDVSAVLLIAIRTFRLIFHPEQMREVRMKPVE 217


>ref|YP_001990983.1| Tripartite ATP-independent periplasmic transporter DctQ component
           [Rhodopseudomonas palustris TIE-1]
 gb|ACF00508.1| Tripartite ATP-independent periplasmic transporter DctQ component
           [Rhodopseudomonas palustris TIE-1]
          Length = 190

 Score =  281 bits (720), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 153/167 (91%)

Query: 22  KNFMDRFIDSIEWVAAFFVGVVALNTFTAVFMRKFFAVTIPDYYNFGQFLLGILIFWGIA 81
           KN MDRFID+IEW+AAFFVG+VALNTF AVFMRKFF+VTIPDYYNFGQF+LG+LIFWGIA
Sbjct: 24  KNGMDRFIDAIEWIAAFFVGIVALNTFLAVFMRKFFSVTIPDYYNFGQFMLGVLIFWGIA 83

Query: 82  ATSYRGTHITVDLVWANASPRYQRWIDIFATLVLLFVVSVQTYTLVDKVIDTRNSHIVTM 141
           ATSYRG+HITVDLVWA ASPR+QR IDIFATLVLLFVVSVQTYTL DKV+ T+  HIVTM
Sbjct: 84  ATSYRGSHITVDLVWAAASPRWQRIIDIFATLVLLFVVSVQTYTLFDKVVTTKADHIVTM 143

Query: 142 DLGVPVWPFFLVSWIGDVSAVLLIAIRTYRLIFHPEDIHDAKIKTAE 188
           DL +P+WPF+LVSWIGDVSAVLLIAIRT+RLIFHPE + + ++K  E
Sbjct: 144 DLQIPIWPFYLVSWIGDVSAVLLIAIRTFRLIFHPEQMREVRMKPVE 190


>ref|YP_004110047.1| TRAP dicarboxylate transporter subunit DctQ [Rhodopseudomonas
           palustris DX-1]
 gb|ADU45314.1| TrapT family, DctQ subunit C4-dicarboxylate transport
           [Rhodopseudomonas palustris DX-1]
          Length = 190

 Score =  280 bits (715), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 153/167 (91%)

Query: 22  KNFMDRFIDSIEWVAAFFVGVVALNTFTAVFMRKFFAVTIPDYYNFGQFLLGILIFWGIA 81
           K+ MDRFID+IEW+AAFFVG+VALNTF AVFMRKFFAVTIPDYYNFGQF+LG+LIFWGIA
Sbjct: 24  KDGMDRFIDAIEWIAAFFVGIVALNTFLAVFMRKFFAVTIPDYYNFGQFMLGVLIFWGIA 83

Query: 82  ATSYRGTHITVDLVWANASPRYQRWIDIFATLVLLFVVSVQTYTLVDKVIDTRNSHIVTM 141
           ATSYRG+HITVDL+WA ASPR+QR IDIFATLVLLFVVSVQTYTL DKV+ TR  HIVTM
Sbjct: 84  ATSYRGSHITVDLLWAAASPRWQRMIDIFATLVLLFVVSVQTYTLFDKVVTTRADHIVTM 143

Query: 142 DLGVPVWPFFLVSWIGDVSAVLLIAIRTYRLIFHPEDIHDAKIKTAE 188
           DL +P+WPF+L++W+GDVSAVLLIAIRT+RLIFHPE + D ++K  E
Sbjct: 144 DLQIPIWPFYLLAWLGDVSAVLLIAIRTFRLIFHPEQMRDVRMKPVE 190


>ref|YP_487187.1| TRAP dicarboxylate family transporter DctQ subunit
           [Rhodopseudomonas palustris HaA2]
 gb|ABD08276.1| TrapT family, DctQ subunit, C4-dicarboxylate transport
           [Rhodopseudomonas palustris HaA2]
          Length = 189

 Score =  278 bits (711), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/173 (78%), Positives = 151/173 (87%)

Query: 16  PPEPARKNFMDRFIDSIEWVAAFFVGVVALNTFTAVFMRKFFAVTIPDYYNFGQFLLGIL 75
           P     KN MDRFID IEW+AAFFVGVVALNTF AVFMRKFF+VTIPDYYN GQFLLGIL
Sbjct: 17  PTRRFPKNGMDRFIDVIEWIAAFFVGVVALNTFLAVFMRKFFSVTIPDYYNVGQFLLGIL 76

Query: 76  IFWGIAATSYRGTHITVDLVWANASPRYQRWIDIFATLVLLFVVSVQTYTLVDKVIDTRN 135
           IFWGIAATSYRGTHITVDL+W N  PR QRWID+FATLVLLFVV+VQTYTL DKV+ TR 
Sbjct: 77  IFWGIAATSYRGTHITVDLLWGNVGPRAQRWIDVFATLVLLFVVTVQTYTLFDKVVTTRA 136

Query: 136 SHIVTMDLGVPVWPFFLVSWIGDVSAVLLIAIRTYRLIFHPEDIHDAKIKTAE 188
            HIVTMDL +P+WPFFLV+W+GDV+AV+LIAIRT+RLIFHP+++HD K K  E
Sbjct: 137 DHIVTMDLQMPIWPFFLVAWLGDVAAVVLIAIRTWRLIFHPDELHDPKFKPVE 189


>ref|YP_782715.1| TRAP dicarboxylate family transporter subunit DctQ
           [Rhodopseudomonas palustris BisA53]
 gb|ABJ07735.1| TrapT family, DctQ subunit, C4-dicarboxylate transport
           [Rhodopseudomonas palustris BisA53]
          Length = 189

 Score =  276 bits (707), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 134/173 (77%), Positives = 152/173 (87%)

Query: 16  PPEPARKNFMDRFIDSIEWVAAFFVGVVALNTFTAVFMRKFFAVTIPDYYNFGQFLLGIL 75
           P     K+ MDRFIDSIEW+AA FVG+VALNTF AVFMRKFFAVTIPDYYN GQFLLGIL
Sbjct: 17  PTRRMAKDGMDRFIDSIEWIAALFVGIVALNTFIAVFMRKFFAVTIPDYYNVGQFLLGIL 76

Query: 76  IFWGIAATSYRGTHITVDLVWANASPRYQRWIDIFATLVLLFVVSVQTYTLVDKVIDTRN 135
           IFWGIAATSYRGTHITVDL+WAN +PR+QR ID+FATLVLLFVV+VQTYTL DKV+ TR 
Sbjct: 77  IFWGIAATSYRGTHITVDLLWANVTPRWQRLIDVFATLVLLFVVTVQTYTLFDKVVTTRA 136

Query: 136 SHIVTMDLGVPVWPFFLVSWIGDVSAVLLIAIRTYRLIFHPEDIHDAKIKTAE 188
             IVTMDL +P+WPFFLV+WIGDV+AVLLIAIRT+RLIFHP+ +HD ++K  E
Sbjct: 137 DGIVTMDLQLPIWPFFLVAWIGDVAAVLLIAIRTWRLIFHPDRLHDPRVKATE 189