BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0036.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_532091.1| LysR family transcriptional regulator [Rhodopse... 444 e-123 ref|ZP_08628346.1| transcriptional regulator, LysR family [Brady... 429 e-118 ref|NP_774476.1| transcriptional regulator [Bradyrhizobium japon... 429 e-118 ref|YP_782719.1| LysR family transcriptional regulator [Rhodopse... 428 e-118 ref|YP_485319.1| LysR family transcriptional regulator [Rhodopse... 409 e-112 >ref|YP_532091.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD87772.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 298 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/296 (73%), Positives = 253/296 (85%) Query: 3 MDRIDAMQAFVAVADLEGFAPAARKLGLSPSAITRLIAALEERLGARLLQRTTRQVTLTD 62 MDR+DAM AFVAVADL+GFAPAA KLGLSPSA+TRL+AALEER+GARLLQRTTR VTLTD Sbjct: 1 MDRLDAMTAFVAVADLQGFAPAACKLGLSPSAVTRLVAALEERVGARLLQRTTRSVTLTD 60 Query: 63 AGSRYLERARRILADVEEAEDAVESERTRPEGRLVISAPFGFGRLHVSPVVSAYLKRYPD 122 G+RYLERARRILADVEEAE + ++ERT+P GRLV+SAP GFGRLHV+P++SA+LKRYP+ Sbjct: 61 VGARYLERARRILADVEEAEGSAQAERTQPAGRLVVSAPVGFGRLHVTPLISAWLKRYPE 120 Query: 123 VGVDLRLSDRRINLVEDGVDLAVRIGHLPDSTLVARHVGRMRRIVVASAGYLKLRGRPKR 182 V +LRL+DR +NLVEDGVD A+RIG LPDS+LVAR VG MRRIVVAS YL RG PK Sbjct: 121 VAGELRLTDRVVNLVEDGVDCAIRIGQLPDSSLVARAVGDMRRIVVASPDYLAARGVPKT 180 Query: 183 PADLTAHDTIQFGAMTATPDWRFMEDGREIRITPTPRFTSNSSDAAIQYAEQDGGLTRVM 242 PA L HDTIQFGA+ A PDWRF + GREIR+ TPRFT+N +DAAI +AEQ GGLTRV+ Sbjct: 181 PAALAKHDTIQFGALAAAPDWRFQDAGREIRVACTPRFTTNVADAAIWHAEQGGGLTRVL 240 Query: 243 AYQAAESLKARRLQIVLAEFEQPAVPIHVVYPTTRLLSAKVRTFIDLVTEITDWYF 298 AYQAAE L A RL++VL +FE P +PIH+VYPT+RLLSAKVR+FIDL+ E DW F Sbjct: 241 AYQAAEGLAAGRLKVVLRKFEPPPLPIHIVYPTSRLLSAKVRSFIDLLIETADWRF 296 >ref|ZP_08628346.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09255.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] Length = 299 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/296 (70%), Positives = 249/296 (84%) Query: 3 MDRIDAMQAFVAVADLEGFAPAARKLGLSPSAITRLIAALEERLGARLLQRTTRQVTLTD 62 MDRIDAM+AFVAVADL+GFAPAARKLGLS SA+TRLIA+LE LGARLLQRTTR VTLTD Sbjct: 1 MDRIDAMRAFVAVADLQGFAPAARKLGLSASAVTRLIASLENHLGARLLQRTTRSVTLTD 60 Query: 63 AGSRYLERARRILADVEEAEDAVESERTRPEGRLVISAPFGFGRLHVSPVVSAYLKRYPD 122 G+RYLERARRIL D+EEAED+V++ER++P GRL++SAP FGRLHV PV+SAYLK+YPD Sbjct: 61 VGARYLERARRILGDLEEAEDSVQAERSKPSGRLIVSAPLMFGRLHVGPVMSAYLKQYPD 120 Query: 123 VGVDLRLSDRRINLVEDGVDLAVRIGHLPDSTLVARHVGRMRRIVVASAGYLKLRGRPKR 182 V +LRLSDR +NLVE+G+DLAVRIGHL DS+++AR VG MRR+VVAS YLK RG P++ Sbjct: 121 VSAELRLSDRTVNLVEEGIDLAVRIGHLADSSVIARAVGDMRRVVVASPRYLKARGTPQK 180 Query: 183 PADLTAHDTIQFGAMTATPDWRFMEDGREIRITPTPRFTSNSSDAAIQYAEQDGGLTRVM 242 +DL H IQF +A +WRF+EDGREIR+ T RF +NS+DAA+ +AEQ GGL V+ Sbjct: 181 LSDLADHQVIQFSGSSALMEWRFIEDGREIRVPNTSRFATNSTDAAVLHAEQGGGLISVL 240 Query: 243 AYQAAESLKARRLQIVLAEFEQPAVPIHVVYPTTRLLSAKVRTFIDLVTEITDWYF 298 AYQ AESLKA RL+IVLA++E P +PIH+VYPT+RLLSAKVR FIDLV TDW F Sbjct: 241 AYQVAESLKAGRLKIVLAKYELPTMPIHLVYPTSRLLSAKVRAFIDLVVAKTDWRF 296 >ref|NP_774476.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53101.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 294 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/296 (71%), Positives = 243/296 (82%), Gaps = 3/296 (1%) Query: 3 MDRIDAMQAFVAVADLEGFAPAARKLGLSPSAITRLIAALEERLGARLLQRTTRQVTLTD 62 MDR++AM FV VADL GFAPAARKL LSPSA+TRLIAALEE LGARLLQRTTRQVTLTD Sbjct: 1 MDRLEAMHVFVTVADLRGFAPAARKLHLSPSAVTRLIAALEEHLGARLLQRTTRQVTLTD 60 Query: 63 AGSRYLERARRILADVEEAEDAVESERTRPEGRLVISAPFGFGRLHVSPVVSAYLKRYPD 122 G+RYLERARRILADVEEA+ + ER RP GRLV+SAP GFGRLHV PV++AYLKRYP+ Sbjct: 61 VGTRYLERARRILADVEEADGSAREERNRPSGRLVVSAPVGFGRLHVGPVMTAYLKRYPE 120 Query: 123 VGVDLRLSDRRINLVEDGVDLAVRIGHLPDSTLVARHVGRMRRIVVASAGYLKLRGRPKR 182 V +LRLSD +NLVED VD+AVRIGHL DS+LVAR VG MRRIVVA+ GYLK G PK Sbjct: 121 VAGELRLSDHLVNLVEDAVDVAVRIGHLADSSLVARQVGEMRRIVVAAPGYLKRHGEPKT 180 Query: 183 PADLTAHDTIQFGAMTATPDWRFMEDGREIRITPTPRFTSNSSDAAIQYAEQDGGLTRVM 242 P L +H TIQFG + W FM+DGR+I +T PR TSNS+DAA+QYAE GG+TRV+ Sbjct: 181 PEALASHQTIQFG---PSASWHFMQDGRDIEVTTNPRLTSNSADAALQYAEAGGGVTRVL 237 Query: 243 AYQAAESLKARRLQIVLAEFEQPAVPIHVVYPTTRLLSAKVRTFIDLVTEITDWYF 298 AYQAAE LK RL++VLA++EQPA+PIHVVYPT+RLLSAKVR F+DLV E +W F Sbjct: 238 AYQAAEGLKRGRLKVVLAKYEQPALPIHVVYPTSRLLSAKVRAFVDLVVETAEWRF 293 >ref|YP_782719.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ07739.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 299 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/296 (72%), Positives = 257/296 (86%) Query: 3 MDRIDAMQAFVAVADLEGFAPAARKLGLSPSAITRLIAALEERLGARLLQRTTRQVTLTD 62 MDR+DAM AFVAVADL+GFAPAARKL LSPSA+TRL+AALEER+GARLLQRTTR VTLTD Sbjct: 1 MDRLDAMTAFVAVADLQGFAPAARKLRLSPSAVTRLVAALEERVGARLLQRTTRSVTLTD 60 Query: 63 AGSRYLERARRILADVEEAEDAVESERTRPEGRLVISAPFGFGRLHVSPVVSAYLKRYPD 122 G+RYLERARRILADVEEAE + ++ERTRP GRLV+SAPFGFGR+HV+P++SA+LKRYP+ Sbjct: 61 VGARYLERARRILADVEEAEHSAQAERTRPSGRLVVSAPFGFGRVHVTPLISAWLKRYPE 120 Query: 123 VGVDLRLSDRRINLVEDGVDLAVRIGHLPDSTLVARHVGRMRRIVVASAGYLKLRGRPKR 182 V +LRL+DR +NLVEDGVD A+RIGHLPDS+LVAR VG MRRIVVAS YL RG PK Sbjct: 121 VAGELRLTDRVVNLVEDGVDCAIRIGHLPDSSLVARAVGDMRRIVVASPAYLAARGTPKT 180 Query: 183 PADLTAHDTIQFGAMTATPDWRFMEDGREIRITPTPRFTSNSSDAAIQYAEQDGGLTRVM 242 P L HDTI+FGA++A P+WRF+E GREIR+ PRFT+N +DAAI +AEQDGGLTRV+ Sbjct: 181 PQALAGHDTIRFGALSAAPEWRFVEAGREIRVAVAPRFTTNVADAAIWHAEQDGGLTRVL 240 Query: 243 AYQAAESLKARRLQIVLAEFEQPAVPIHVVYPTTRLLSAKVRTFIDLVTEITDWYF 298 AYQAA++L A RL++VL +FE P +PI+VVYPT+RLLSAKVR+F+DLV E +W F Sbjct: 241 AYQAADALAAGRLKVVLKKFEPPPLPINVVYPTSRLLSAKVRSFVDLVVEQAEWRF 296 >ref|YP_485319.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD06408.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 299 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/296 (69%), Positives = 247/296 (83%) Query: 3 MDRIDAMQAFVAVADLEGFAPAARKLGLSPSAITRLIAALEERLGARLLQRTTRQVTLTD 62 MDR+DAM AFVAVADL GFAPAARKLGLSPSA+TRL+AALE+R+GARLLQRTTR V LTD Sbjct: 1 MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTD 60 Query: 63 AGSRYLERARRILADVEEAEDAVESERTRPEGRLVISAPFGFGRLHVSPVVSAYLKRYPD 122 G+RYLER +RIL+DVEEAE + +ER P GRLV+SAP GFGRLHV+P++S YL RYPD Sbjct: 61 IGARYLERVKRILSDVEEAEASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPD 120 Query: 123 VGVDLRLSDRRINLVEDGVDLAVRIGHLPDSTLVARHVGRMRRIVVASAGYLKLRGRPKR 182 V +LRLSDR INLVEDGVD AVRIG L DS+LVAR +G MRRIVVAS YL RG P Sbjct: 121 VAGELRLSDRIINLVEDGVDCAVRIGPLADSSLVARQLGTMRRIVVASPDYLGARGVPMV 180 Query: 183 PADLTAHDTIQFGAMTATPDWRFMEDGREIRITPTPRFTSNSSDAAIQYAEQDGGLTRVM 242 PA++ AHDT+ FGA+T+T WRF+ DGR++R+ TPRF +N++DAAI YAE+ GGLTRV+ Sbjct: 181 PAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVL 240 Query: 243 AYQAAESLKARRLQIVLAEFEQPAVPIHVVYPTTRLLSAKVRTFIDLVTEITDWYF 298 AYQAAE+++ RLQ+VLA++E P +PI +VYPT+RLLSAKVRTF+DL EI DW F Sbjct: 241 AYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRF 296