BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0258.0030.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_576003.1| hypothetical protein Nham_0655 [Nitrobacter ham...   180   6e-44
ref|ZP_01044585.1| hypothetical protein NB311A_03624 [Nitrobacte...   165   2e-39
ref|YP_317182.1| hypothetical protein Nwi_0563 [Nitrobacter wino...   164   3e-39
ref|YP_570721.1| hypothetical protein RPD_3597 [Rhodopseudomonas...   163   8e-39
ref|YP_001242895.1| hypothetical protein BBta_7106 [Bradyrhizobi...   159   1e-37

>ref|YP_576003.1| hypothetical protein Nham_0655 [Nitrobacter hamburgensis X14]
 gb|ABE61543.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 132

 Score =  180 bits (456), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 106/127 (83%), Gaps = 3/127 (2%)

Query: 2   FSSRDAFENDACPVADDLLGQMYRANPNGLSLLVANVAPDVRARLALFCYRRSHLHALAV 61
            SSRDAFEND CPV DDLLG MYRAN +GL  L+A++APDVRA LA+FCYRRSHLHALA+
Sbjct: 1   MSSRDAFENDLCPVNDDLLGAMYRANEHGLPQLIASIAPDVRAMLAMFCYRRSHLHALAL 60

Query: 62  AIASSCSEWELANSGGRVGSTLYALSREP--ARAATVSHGGRKPITLSTKPLTTFAPIVD 119
           ++ASSCSE +L   GGRVGSTL+ALSRE      A+ SHG RKPITLST+PLTTFAP+ D
Sbjct: 61  SVASSCSERDLVQLGGRVGSTLFALSREARLPHVASSSHGQRKPITLSTRPLTTFAPL-D 119

Query: 120 DELDDED 126
           D++DD++
Sbjct: 120 DQVDDDE 126


>ref|ZP_01044585.1| hypothetical protein NB311A_03624 [Nitrobacter sp. Nb-311A]
 gb|EAQ37366.1| hypothetical protein NB311A_03624 [Nitrobacter sp. Nb-311A]
          Length = 132

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 2/127 (1%)

Query: 1   MFSSRDAFENDACPVADDLLGQMYRANPNGLSLLVANVAPDVRARLALFCYRRSHLHALA 60
           M SS  AFEND CP+ DDLLG MYRA+ +GL  L+A+VAPDVRA LALFCYRRSHLHALA
Sbjct: 1   MLSSAHAFENDICPIKDDLLGAMYRASEHGLPQLIASVAPDVRAMLALFCYRRSHLHALA 60

Query: 61  VAIASSCSEWELANSGGRVGSTLYALSREP-ARAATVSHGGRKPITLSTKPLTTFAPIVD 119
           +++ASSC+E +L   GGRVGSTL+ALSR      A   H  RKPITLST+PL+TF P+ D
Sbjct: 61  LSVASSCTERDLVALGGRVGSTLFALSRNARQHHAPSQHSQRKPITLSTRPLSTFVPL-D 119

Query: 120 DELDDED 126
           D++DD++
Sbjct: 120 DQVDDDE 126


>ref|YP_317182.1| hypothetical protein Nwi_0563 [Nitrobacter winogradskyi Nb-255]
 gb|ABA03830.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 131

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 101/127 (79%), Gaps = 4/127 (3%)

Query: 2   FSSRDAFENDACPVADDLLGQMYRANPNGLSLLVANVAPDVRARLALFCYRRSHLHALAV 61
            SS DAFEND CP+ DDLLG MYRA+ +GL  L+A+VAPDVRA LALFCYRRSHLHALA+
Sbjct: 1   MSSSDAFENDICPIKDDLLGAMYRASEHGLPQLIASVAPDVRAMLALFCYRRSHLHALAL 60

Query: 62  AIASSCSEWELANSGGRVGSTLYALSREPARAATV--SHGGRKPITLSTKPLTTFAPIVD 119
           A+ASSC+E +L   GGRVGSTL+ALSR  AR   V   HG RKPITLST+PL+T+ P+ D
Sbjct: 61  AVASSCTERDLIVLGGRVGSTLFALSRN-ARQPHVRSPHGQRKPITLSTRPLSTYVPL-D 118

Query: 120 DELDDED 126
           D  DDE+
Sbjct: 119 DLADDEE 125


>ref|YP_570721.1| hypothetical protein RPD_3597 [Rhodopseudomonas palustris BisB5]
 gb|ABE40820.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 136

 Score =  163 bits (413), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 101/132 (76%), Gaps = 4/132 (3%)

Query: 1   MFSSRDAFENDACPVADDLLGQMYRANPNGLSLLVANVAPDVRARLALFCYRRSHLHALA 60
           M SSR+ FEND CPV DDLLG MYRAN NGL  LV +V+ DVRA+LALFCYRR+HLHALA
Sbjct: 1   MLSSRENFENDHCPVRDDLLGAMYRANENGLPALVESVSSDVRAQLALFCYRRAHLHALA 60

Query: 61  VAIASSCSEWELANSGGRVGSTLYALSRE----PARAATVSHGGRKPITLSTKPLTTFAP 116
           + IA+SC E +L + GGRVGS L ALSRE      R    ++G RK ITLSTKPL++FAP
Sbjct: 61  LTIAASCDERDLIHHGGRVGSVLVALSRELAAPRPRPPAPTYGNRKAITLSTKPLSSFAP 120

Query: 117 IVDDELDDEDVS 128
           +  DE+DD++++
Sbjct: 121 LDQDEVDDDEIA 132


>ref|YP_001242895.1| hypothetical protein BBta_7106 [Bradyrhizobium sp. BTAi1]
 gb|ABQ38989.1| hypothetical protein BBta_7106 [Bradyrhizobium sp. BTAi1]
          Length = 128

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 103/125 (82%), Gaps = 3/125 (2%)

Query: 1   MFSSRDAFENDACPVADDLLGQMYRANPNGLSLLVANVAPDVRARLALFCYRRSHLHALA 60
           MF+SR+AF++D CPV D+LLG +YRA+ NGL  LV +V+ DVRA LALFCYRR+HLH+LA
Sbjct: 1   MFASRNAFDSDDCPVGDELLGALYRADENGLPALVESVSADVRAMLALFCYRRAHLHSLA 60

Query: 61  VAIASSCSEWELANSGGRVGSTLYALSREPARAATVSHGGRKPITLSTKPLTTFAPIVDD 120
           +AIASSCSE +L+++GGRVG+ LYA SR+  R+A +S   RKPI+LST PL+  AP+ DD
Sbjct: 61  LAIASSCSEQDLSDAGGRVGAALYAQSRKSGRSAPLS--SRKPISLSTMPLSPVAPL-DD 117

Query: 121 ELDDE 125
           ELDDE
Sbjct: 118 ELDDE 122