BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0258.0029.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001203100.1| hypothetical protein BRADO0947 [Bradyrhizobi...   187   7e-46
ref|YP_001242896.1| hypothetical protein BBta_7107 [Bradyrhizobi...   186   7e-46
ref|NP_774494.1| hypothetical protein bll7854 [Bradyrhizobium ja...   184   4e-45
ref|YP_576002.1| hypothetical protein Nham_0654 [Nitrobacter ham...   173   9e-42
ref|ZP_01044586.1| hypothetical protein NB311A_03629 [Nitrobacte...   168   3e-40

>ref|YP_001203100.1| hypothetical protein BRADO0947 [Bradyrhizobium sp. ORS 278]
 emb|CAL74863.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 116

 Score =  187 bits (474), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 101/116 (87%), Gaps = 2/116 (1%)

Query: 1   LLLTAKHIIADFMLQNAWMAIGKDQKTGWALPLLAHCLVHLAVALALILVVAPRFWYVAF 60
           LLLT KHIIADF+LQNAWMA GKDQ+ GWALPLL HCL+H AVA  LIL+VAP+FW+VA 
Sbjct: 2   LLLTFKHIIADFVLQNAWMAHGKDQRKGWALPLLVHCLIHFAVATVLILIVAPKFWFVAM 61

Query: 61  IDFVIHIIVDRAKGICASHFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 116
           IDF IHI +DR KGIC+S FG+TLE  HPWFWTLIGVDQALHHLTGF LSI+MAAN
Sbjct: 62  IDFAIHITIDRIKGICSSRFGMTLE--HPWFWTLIGVDQALHHLTGFGLSIFMAAN 115


>ref|YP_001242896.1| hypothetical protein BBta_7107 [Bradyrhizobium sp. BTAi1]
 gb|ABQ38990.1| hypothetical protein BBta_7107 [Bradyrhizobium sp. BTAi1]
          Length = 116

 Score =  186 bits (473), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 102/116 (87%), Gaps = 2/116 (1%)

Query: 1   LLLTAKHIIADFMLQNAWMAIGKDQKTGWALPLLAHCLVHLAVALALILVVAPRFWYVAF 60
           LLLT KH+IADF+LQNAWMA GKDQ+ GWALPLL HCL+HLAVA+ LIL+VAP+FW+VA 
Sbjct: 2   LLLTFKHVIADFVLQNAWMAYGKDQRKGWALPLLVHCLIHLAVAMVLILIVAPKFWFVAV 61

Query: 61  IDFVIHIIVDRAKGICASHFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 116
           +DF IHI VDR KGIC+S  GVT+E  HPWFWTLIGVDQALHHLTGF LSI+MAAN
Sbjct: 62  VDFAIHITVDRLKGICSSRCGVTIE--HPWFWTLIGVDQALHHLTGFGLSIFMAAN 115


>ref|NP_774494.1| hypothetical protein bll7854 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53119.1| bll7854 [Bradyrhizobium japonicum USDA 110]
          Length = 138

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 102/116 (87%), Gaps = 2/116 (1%)

Query: 1   LLLTAKHIIADFMLQNAWMAIGKDQKTGWALPLLAHCLVHLAVALALILVVAPRFWYVAF 60
           LLLT KHIIADF+LQ AWMA GKDQK GWALPLL HCL+HLAVAL LIL+VAP+FW+VAF
Sbjct: 25  LLLTFKHIIADFVLQTAWMAHGKDQKHGWALPLLVHCLIHLAVALPLILIVAPKFWFVAF 84

Query: 61  IDFVIHIIVDRAKGICASHFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 116
           IDFVIHI +DRAKG  +++FGV L   HPWFWTLIGVDQALHHLTGF LSI+MAAN
Sbjct: 85  IDFVIHITIDRAKGFVSANFGVDL--AHPWFWTLIGVDQALHHLTGFGLSIFMAAN 138


>ref|YP_576002.1| hypothetical protein Nham_0654 [Nitrobacter hamburgensis X14]
 gb|ABE61542.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 136

 Score =  173 bits (438), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 104/115 (90%)

Query: 2   LLTAKHIIADFMLQNAWMAIGKDQKTGWALPLLAHCLVHLAVALALILVVAPRFWYVAFI 61
           +LT KH+IADF+LQN+WMAIGKDQKTGWALPLLAHCLVHLA+ALALILV+APRFW++AFI
Sbjct: 21  VLTVKHVIADFVLQNSWMAIGKDQKTGWALPLLAHCLVHLALALALILVIAPRFWFIAFI 80

Query: 62  DFVIHIIVDRAKGICASHFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 116
           DF IHI+VDRAKG CAS F VT E  HPWFWTLIGVDQALHHLTGF LSI MA N
Sbjct: 81  DFAIHIVVDRAKGFCASTFNVTQEHQHPWFWTLIGVDQALHHLTGFGLSIVMAFN 135


>ref|ZP_01044586.1| hypothetical protein NB311A_03629 [Nitrobacter sp. Nb-311A]
 gb|EAQ37367.1| hypothetical protein NB311A_03629 [Nitrobacter sp. Nb-311A]
          Length = 142

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 104/116 (89%), Gaps = 2/116 (1%)

Query: 1   LLLTAKHIIADFMLQNAWMAIGKDQKTGWALPLLAHCLVHLAVALALILVVAPRFWYVAF 60
           ++LT KH++ADF+LQ +WMAIGKDQKTGW LPLL+HCLVHLA+ALALIL++APRFW++AF
Sbjct: 28  VVLTIKHVLADFVLQTSWMAIGKDQKTGWGLPLLSHCLVHLALALALILLIAPRFWFIAF 87

Query: 61  IDFVIHIIVDRAKGICASHFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 116
           IDF IHI+VDRAKGIC S F VT +  HPWFWTLIGVDQALHHLTGFAL+I MA N
Sbjct: 88  IDFAIHIVVDRAKGICVSTFDVTHQ--HPWFWTLIGVDQALHHLTGFALAIVMAFN 141