BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0028.p (468 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774495.1| hypothetical protein blr7855 [Bradyrhizobium ja... 594 e-167 ref|ZP_00056281.1| COG2358: TRAP-type uncharacterized transport ... 275 1e-71 ref|YP_419594.1| TRAP-type transport system [Magnetospirillum ma... 243 6e-62 ref|YP_001204539.1| putative transmembrane component [Bradyrhizo... 164 4e-38 ref|YP_004109936.1| hypothetical protein Rpdx1_3635 [Rhodopseudo... 156 7e-36 >ref|NP_774495.1| hypothetical protein blr7855 [Bradyrhizobium japonicum USDA 110] dbj|BAC53120.1| blr7855 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 314/482 (65%), Positives = 374/482 (77%), Gaps = 18/482 (3%) Query: 1 MSAEAPSPAPMPPRPPVAKPVVKTNRAQIIVFTLLTLLLSAITVIGGRLWLRNSETLVFA 60 MS E P+ + + P PP V+KTN+ Q++++ +LTLLLS TV GR + NSETL FA Sbjct: 1 MSTEGPTTSSVEP-PPRRPKVIKTNQQQVLLYVVLTLLLSLATVWAGRALVHNSETLTFA 59 Query: 61 VGDAKGPEAKFAAKLAIVLKNNSSRLRLKIAPNPDNAKALAQFDRRDASLAILRTDARVP 120 VG EA FA KLA +LKNN+SR R+KI NPDNAKALAQFDR+ A LA+LRTDA+VP Sbjct: 60 VGAPNSDEALFAVKLAALLKNNASRFRIKIVNNPDNAKALAQFDRKQADLAVLRTDAKVP 119 Query: 121 PRARAIAILEHDVVLVLSPGGKKIKSLSELKKKRIAVVGDGENSVNFVRSALEIADSPDA 180 RAR +AILEHD+VL+L PG KKIKSL+ELKKK++AV+ + E+S+ FVR L+I D PDA Sbjct: 120 LRARTLAILEHDLVLLLGPGNKKIKSLAELKKKKVAVLAENESSLAFVRGILDIPDGPDA 179 Query: 181 AQRVQQAPPNTPFDKLFA--SGFAAVIAIEHASKIVKDKTYEQYAKRAGGFTLNAIDAAK 238 A R+Q AP DKL A +GF AVIAI HASK V+DK YEQ AKR GGFTLNAID K Sbjct: 180 A-RIQMAPQGATLDKLLAPGNGFGAVIAIVHASKAVRDKAYEQVAKR-GGFTLNAIDETK 237 Query: 239 ALARKYPAISEETVSTGMLSSSPAIPDDEVDTIGLEWLLVAQSSMSTTTAAELARIIYEN 298 ALARK+P I++ET++ G LS SP IPDD+++TIGLEWLLVAQS MS TA ELAR +YEN Sbjct: 238 ALARKFPGIADETLTAGTLSVSPEIPDDDLETIGLEWLLVAQSRMSAATAGELARTVYEN 297 Query: 299 KAELALDDGFASKIEPAATDKDAFIVAHQGAAEYINDDTKSFMDRYSDLMYLGAAALSII 358 K+ L LD GFAS+IEPA+ +KDA+++AHQGAA+YINDDTKSFMD+YSDLMYLGAAALS+I Sbjct: 298 KSALGLDSGFASRIEPASVEKDAYVMAHQGAADYINDDTKSFMDKYSDLMYLGAAALSVI 357 Query: 359 GSIFAAIYTKITRVAPEKASELAGRILDIGERVEHATCAEHLDELQDELEAILRGAVTGL 418 GSIFAAIY KITR+APEKASEL+ ILDIGER+EHA + L+ LQDELE ILRGAV GL Sbjct: 358 GSIFAAIYAKITRIAPEKASELSTAILDIGERIEHAHSLDQLECLQDELEGILRGAVIGL 417 Query: 419 RDGTVSGDGMDTFKLGYELVRDEIALRRDHLKRH-------------PATPDENLVVVKA 465 RDGT+S DG+DTFKLGYE VRDEI +RRD+LKRH P D N+VVVK Sbjct: 418 RDGTISTDGLDTFKLGYEFVRDEIGMRRDYLKRHAGEIDETAPDAGPPQHDDSNVVVVKT 477 Query: 466 AN 467 A Sbjct: 478 AQ 479 >ref|ZP_00056281.1| COG2358: TRAP-type uncharacterized transport system, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 434 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/401 (37%), Positives = 239/401 (59%), Gaps = 5/401 (1%) Query: 50 WLRNSETLVFAVGDAKGPEAKFAAKLAIVLKNNSSRLRLKIAPNPDNAKALAQFDRRDAS 109 W T+ AVG PE +FA KLA +L NN + +RL++ + L++F + +A Sbjct: 28 WYYKPATVTIAVGPESSPEHRFARKLAELLANNRASIRLRLLTTEAASLNLSRFAQHEAD 87 Query: 110 LAILRTDAR-VPPRARAIAILEHDVVLVLSPGGKKIKSLSELKKKRIAVVG-DGENSVNF 167 L ILRTD R +P ARA+A+LE +VVL+++P K KSL++++++R VVG DG N F Sbjct: 88 LVILRTDERRIPSSARALAVLEEEVVLLITPPKSKFKSLADMERRRTVVVGRDGRNEA-F 146 Query: 168 VRSALEIADSPDAAQRVQQAPPNTPFDKLFASGFAA--VIAIEHASKIVKDKTYEQYAKR 225 VR LE ++ PP P +L G +A + +E S++ + ++ A Sbjct: 147 VRRLLEQYKHDPKLIDIRTVPPGVPLAQLLGPGGSADLAVVVEPLSRLSGAEDFQDLALT 206 Query: 226 AGGFTLNAIDAAKALARKYPAISEETVSTGMLSSSPAIPDDEVDTIGLEWLLVAQSSMST 285 GFT++ I +KAL RK P + ET+ G+L SP IP++E++T+ L+ +LVA++ M Sbjct: 207 LKGFTVHTIADSKALERKLPGLYAETIEAGLLVGSPRIPEEELETVALQRILVARAKMPE 266 Query: 286 TTAAELARIIYENKAELALDDGFASKIEPAATDKDAFIVAHQGAAEYINDDTKSFMDRYS 345 T +L ++EN +LA++ FA++IEP +T+K A I H GA +Y+ + K+F DRYS Sbjct: 267 TQVVDLMSALFENGRQLAIEQNFATRIEPPSTEKGALIAIHPGADQYVASEVKTFFDRYS 326 Query: 346 DLMYLGAAALSIIGSIFAAIYTKITRVAPEKASELAGRILDIGERVEHATCAEHLDELQD 405 DL+Y+G +A I+GS AA+Y + R AP A A ++++ +R A E LD ++ Sbjct: 327 DLLYVGLSAAGILGSGAAALYGTVFRRAPIHAGRRAKTLMELRDRARTARGKEDLDAVET 386 Query: 406 ELEAILRGAVTGLRDGTVSGDGMDTFKLGYELVRDEIALRR 446 EL+A+L + GL DGT+S G+D F+L Y+ R+ + L R Sbjct: 387 ELDAVLDEVLIGLADGTISSRGLDAFRLAYDGAREALNLAR 427 >ref|YP_419594.1| TRAP-type transport system [Magnetospirillum magneticum AMB-1] dbj|BAE49035.1| TRAP-type uncharacterized transport system [Magnetospirillum magneticum AMB-1] Length = 435 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 144/410 (35%), Positives = 230/410 (56%), Gaps = 6/410 (1%) Query: 50 WLRNSETLVFAVGDAKGPEAKFAAKLAIVLKNNSSRLRLKIAPNPDNAKALAQFDRRDAS 109 W + AV PE +FA KLA VL N + +RL++ +A+A+ + DA Sbjct: 28 WYIKPTVITLAVSPDPSPEYRFARKLADVLAQNRASIRLELMIAESGQQAMARLSQSDAD 87 Query: 110 LAILRTD-ARVPPRARAIAILEHDVVLVLSPGGKKIKSLSELKKKRIAVVG-DGENSVNF 167 LA++R+D R+PP AR++A+LE V+L+++P K++SL +L K+ V+ DG N F Sbjct: 88 LALVRSDDRRIPPMARSVAVLEEQVLLLITPSKSKVRSLGDLAKRHTLVMDRDGRNEALF 147 Query: 168 VRSALEIADSPDAAQRVQQAPPNTPFDKLFA--SGFAAVIAIEHASKIVKDKTYEQYAKR 225 R +E V PP TP G A I + S++ + + + Sbjct: 148 -RRLMEQYRHDGRPASVTVVPPGTPLAPRLGPGGGIDAAILLMPLSRLSGPEDFAAMERD 206 Query: 226 AGGFTLNAIDAAKALARKYPAISEETVSTGMLSSSPAIPDDEVDTIGLEWLLVAQSSMST 285 GF++ AI AKAL RK P + ET+ G+LS SP IPD+++DT+ ++ LLVA++ + Sbjct: 207 FKGFSVQAITDAKALERKIPGLYAETIEAGLLSGSPRIPDEDLDTVAVQRLLVARAKLPE 266 Query: 286 TTAAELARIIYENKAELALDDGFASKIEPAATDKDAFIVAHQGAAEYINDDTKSFMDRYS 345 E+ R ++EN +LA++ FA++IEP +T+K A I H GA +Y++ + K+ DRY+ Sbjct: 267 QHVVEVMRALFENGRQLAVEQTFATRIEPPSTEKAALIAIHPGAQQYVSGEIKTLFDRYA 326 Query: 346 DLMYLGAAALSIIGSIFAAIYTKITRVAPEKASELAGRILDIGERVEHATCAEHLDELQD 405 D++++G A I+GS A+Y + R AP A A + + ER A + LD ++ Sbjct: 327 DVVFIGLYAAGILGSGAVALYGMVFRRAPVHAGSRAHTLAALRERARAARDGQELDAVEM 386 Query: 406 ELEAILRGAVTGLRDGTVSGDGMDTFKLGYELVRDEIALRRDHLKRHPAT 455 E+EA+L G ++GL DG +S G++ F+L Y+ RD +A R + HP T Sbjct: 387 EIEAVLDGVLSGLADGAISPRGLEGFRLAYDAARDAVAASRRMIA-HPTT 435 >ref|YP_001204539.1| putative transmembrane component [Bradyrhizobium sp. ORS 278] emb|CAL76302.1| conserved hypothetical protein; putative signal peptide; putative transmembrane component [Bradyrhizobium sp. ORS 278] Length = 461 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 130/431 (30%), Positives = 211/431 (48%), Gaps = 29/431 (6%) Query: 31 VFTLLTLLLSAITVIGGRLWLRNSETLVFAVGDAKGPEAKFAAKLAIVLKNNSSRLRLKI 90 V + LT+LL+ T WL +TL AVG A + LA S LRL Sbjct: 28 VLSCLTVLLAVGT------WLWQPQTLRIAVGPAGSDDDVLVRALADAFDTRDSALRLVP 81 Query: 91 APNPDNAKALAQFDRRDASLAILRTDARVPPRARAIAILEHDV-VLVLSPGGKK------ 143 +++ A LA+ R D ++PP AR++AIL ++ VL +P G K Sbjct: 82 VATDGPLQSITMLANGQAELAVARGDLQLPPTARSMAILRRNLLVLWAAPRGPKPKSEAR 141 Query: 144 IKSLSELKKKRIAVVGDGENSVNFVRSAL-EIADSPD-------AAQRVQQAPPNTPFDK 195 IK +++L +R+ VVG + +V +R L E +PD A +V + + D Sbjct: 142 IKGMADLAGRRLGVVGVSQVNVALLRVVLGESGVNPDKVTVVQFGANQVSEMTADATLD- 200 Query: 196 LFASGFAAVIAIEHASKIVKDKTYEQYAKRAGGFTLNAIDAAKALARKYPAISEETVSTG 255 FA V A+ + A+R G A+D ++A+A ++P E + TG Sbjct: 201 ----AFAMVGAVNDKTIA---DAIAATARRRGEPRFLAVDVSEAIAERHPLYESEEIPTG 253 Query: 256 MLSSSPAIPDDEVDTIGLEWLLVAQSSMSTTTAAELARIIYENKAELALDDGFASKIEPA 315 +++P PDD+++T+G+ L++A ++MS TA AR+++ KA+LA A++I+ Sbjct: 254 AFATTPQRPDDKIETVGINQLIIATAAMSEETAGAFARLLFTAKAQLAKTVPGAARIQKP 313 Query: 316 ATDKDAFIVAHQGAAEYINDDTKSFMDRYSDLMYLGAAALSIIGSIFAAIYTKITRVAPE 375 TDKDA + AH GAA YI+++ +SF+D+YSD ++ LS +GS A + + R + Sbjct: 314 DTDKDAALPAHPGAAAYIDNNERSFLDKYSDYLWGAVLILSGLGSAAAWLRHFLKRGERQ 373 Query: 376 KASELAGRILDIGERVEHATCAEHLDELQDELEAILRGAVTGLRDGTVSGDGMDTFKLGY 435 ++ R+L A LD++Q E +AILR + DG + + F L Sbjct: 374 DNTDHRDRLLAAIASARQAQTLTELDQMQTEADAILRETLACHDDGAIEDGDLTAFNLVL 433 Query: 436 ELVRDEIALRR 446 + +A RR Sbjct: 434 IQFHEAVANRR 444 >ref|YP_004109936.1| hypothetical protein Rpdx1_3635 [Rhodopseudomonas palustris DX-1] gb|ADU45203.1| hypothetical protein Rpdx1_3635 [Rhodopseudomonas palustris DX-1] Length = 465 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 125/437 (28%), Positives = 208/437 (47%), Gaps = 29/437 (6%) Query: 33 TLLTLLLSAITVIGGRLWLRNSETLVFAVGDAKGPEAKFAAKLAIVLKNNSSRLRLKIAP 92 T+LTL+L A+ V+ + +L AVG G + K LA + + +RL Sbjct: 27 TVLTLILVAVGVLALVFYELRPVSLKIAVGPGGGDDLKLVQALAQSFARDRAAVRLVPLV 86 Query: 93 NPDNAKALAQFDRRDASLAILRTDARVPPRARAIAILEHDVVLVLSP-----GGKKIKSL 147 ++ F A LA+ R D +P A+A+A+L +VV++ +P G K +K++ Sbjct: 87 TGGATPSIDAFRDHKADLAVTRADLDLPADAQAVAVLRKNVVVLWAPSSAGKGKKSVKTI 146 Query: 148 SELKKKRIAVVGDGENSVNFVRSAL-EIADSPDAAQRVQQAPPNTPFDKLFASG------ 200 ++L +R+ V+G +V L E PD + Q FA+G Sbjct: 147 ADLAGRRVGVIGRTPANVKLFDVILAESGVVPDKVHKEQ-----------FATGQLAEMA 195 Query: 201 ----FAAVIAIEHASKIVKDKTYEQYAKRAGGFTLNAIDAAKALARKYPAISEETVSTGM 256 A +A+ + + AK G ID A+A+KYP E + + Sbjct: 196 RDLSLDAFLAVGPLDSKITGEAIAATAKARGELRFLPIDVGDAIAKKYPIYDSEEIPGSI 255 Query: 257 LSSSPAIPDDEVDTIGLEWLLVAQSSMSTTTAAELARIIYENKAELALDDGFASKIEPAA 316 S+ PA P+D+VDT+ + L++A+ S+S+ T +L R I+ + ++A + A KIE Sbjct: 256 FSTQPARPEDKVDTVSVNHLIIARQSLSSVTVTKLTRQIFAARQQIAREMPLAGKIEAPD 315 Query: 317 TDKDAFIVAHQGAAEYINDDTKSFMDRYSDLMYLGAAALSIIGSIFAAIYTKITRVAPEK 376 T+KDA + AH+GAA +I+ ++FM+R SD ++ LS +GS A + +TR E Sbjct: 316 TEKDAALPAHRGAAAFIDGTDRTFMERNSDYIWGLVLLLSGLGSAGAWFRSYLTRDEREA 375 Query: 377 ASELAGRILDIGERVEHATCAEHLDELQDELEAILRGAVTGLRDGTVSGDGMDTFKLGYE 436 +++ R+L + + A E LD LQ +++ ILR + DG + D ++ F L E Sbjct: 376 GTKMRDRVLAMVAKARKAESLEALDALQHDIDWILRDTLDCYDDGAI--DDLEPFSLVLE 433 Query: 437 LVRDEIALRRDHLKRHP 453 + RR L P Sbjct: 434 QFHHAVQDRRAALSTGP 450