BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0258.0026.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobi...   185   2e-45
ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobi...   182   2e-44
ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium ja...   162   1e-38
ref|NP_769243.1| hypothetical protein blr2603 [Bradyrhizobium ja...   161   4e-38
ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacte...   160   5e-38

>ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobium sp. ORS 278]
 emb|CAL77699.1| conserved hypothetical protein with Photosynthetic reaction centre
           domain (PCR-barrel) [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 99/117 (84%)

Query: 3   MDEKEVGNLIGSDKVEGTAVYGSDERKIGSIERVMIDKKSGRVSYAVLGFGGILGLGNDH 62
           +++ E GNLIGSDKVEGTAVYG+D  +IG+IERVMIDK SGRVSYAVL FGG LGLGNDH
Sbjct: 9   LEQSEYGNLIGSDKVEGTAVYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLGLGNDH 68

Query: 63  YPLPWQSLKYDTRLGGYVTGVTESQLRGAPKYGSEREWNWSDIGTTRAVNDYYGVPF 119
           YPLPW SLKYDT+LGGYVT VT+ QLRGAPKY  EREW+W D+ T R V+DYYGV  
Sbjct: 69  YPLPWPSLKYDTQLGGYVTAVTQDQLRGAPKYSDEREWDWGDLATGRKVDDYYGVQL 125


>ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35971.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
          Length = 125

 Score =  182 bits (461), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 103/118 (87%)

Query: 3   MDEKEVGNLIGSDKVEGTAVYGSDERKIGSIERVMIDKKSGRVSYAVLGFGGILGLGNDH 62
           +D++E GNLIGSDKVEGTAVYG+D+ KIG+IERVMIDK SGRVSY VL FGG+LGLGNDH
Sbjct: 8   LDQREYGNLIGSDKVEGTAVYGADDSKIGTIERVMIDKLSGRVSYVVLAFGGLLGLGNDH 67

Query: 63  YPLPWQSLKYDTRLGGYVTGVTESQLRGAPKYGSEREWNWSDIGTTRAVNDYYGVPFV 120
           YPLPWQSLKYDTRLGGYVTGVTE QLRGAPKY  EREW+W D+ T R V+DYYG+   
Sbjct: 68  YPLPWQSLKYDTRLGGYVTGVTEEQLRGAPKYSDEREWDWGDLATGRKVDDYYGIKLA 125


>ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50481.1| bll5216 [Bradyrhizobium japonicum USDA 110]
          Length = 200

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 92/118 (77%), Gaps = 8/118 (6%)

Query: 1   MAMDEKEVGNLIGSDKVEGTAVYGSDERKIGSIERVMIDKKSGRVSYAVLGFGGILGLGN 60
           M M+++E  +LIGSDKVEGT VYG D  K+G +ERVMIDK SG+VSYAVL FGG+LG+G+
Sbjct: 89  MTMEDRETFSLIGSDKVEGTNVYGVDGEKVGYVERVMIDKISGKVSYAVLSFGGLLGIGD 148

Query: 61  DHYPLPWQSLKYDTRLGGYVTGVTESQLRGAPKYGSEREWNWSDIGTTRAVNDYYGVP 118
           DHYPLPWQ+LKYDT LGGYVTG+T+        Y  E  WNWSD  TTR+VN YYGVP
Sbjct: 149 DHYPLPWQALKYDTNLGGYVTGITQ--------YADESSWNWSDPATTRSVNAYYGVP 198


>ref|NP_769243.1| hypothetical protein blr2603 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47868.1| blr2603 [Bradyrhizobium japonicum USDA 110]
          Length = 124

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 98/118 (83%)

Query: 3   MDEKEVGNLIGSDKVEGTAVYGSDERKIGSIERVMIDKKSGRVSYAVLGFGGILGLGNDH 62
           +D  E+G LIGSD+VEGT+VYG+D  KIGSIERVMIDK SG+VSYAVLGFGG LG+GNDH
Sbjct: 7   LDRSEMGRLIGSDRVEGTSVYGADRNKIGSIERVMIDKISGKVSYAVLGFGGFLGVGNDH 66

Query: 63  YPLPWQSLKYDTRLGGYVTGVTESQLRGAPKYGSEREWNWSDIGTTRAVNDYYGVPFV 120
           YPLPWQSLKYDT LGGYVTG+T  +L+GAPKYG + +WNW D    R +N YYGVPF 
Sbjct: 67  YPLPWQSLKYDTDLGGYVTGITAKELQGAPKYGEQSDWNWGDDAAVRGINSYYGVPFA 124


>ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
 gb|EAQ36646.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
          Length = 170

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 87/111 (78%)

Query: 1   MAMDEKEVGNLIGSDKVEGTAVYGSDERKIGSIERVMIDKKSGRVSYAVLGFGGILGLGN 60
           MA  E E   LIGSDKVEGTAV+G  + KIGSIERVMI+K SGRVSYAVL FGG LG+G+
Sbjct: 1   MATQENETRTLIGSDKVEGTAVFGPTDEKIGSIERVMIEKTSGRVSYAVLSFGGFLGIGD 60

Query: 61  DHYPLPWQSLKYDTRLGGYVTGVTESQLRGAPKYGSEREWNWSDIGTTRAV 111
           DHYPLPW +LKYDTRLGGY TG+T  QL+ APKY +E  WNWS+ G T + 
Sbjct: 61  DHYPLPWHTLKYDTRLGGYRTGITLDQLQKAPKYQTESNWNWSEPGRTSSA 111