BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0020.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242897.1| hypothetical protein BBta_7108 [Bradyrhizobi... 328 5e-88 ref|YP_576001.1| hypothetical protein Nham_0653 [Nitrobacter ham... 315 6e-84 ref|YP_001203099.1| hypothetical protein BRADO0946 [Bradyrhizobi... 308 9e-82 ref|ZP_01044587.1| hypothetical protein NB311A_03634 [Nitrobacte... 284 1e-74 ref|YP_570724.1| hypothetical protein RPD_3600 [Rhodopseudomonas... 280 2e-73 >ref|YP_001242897.1| hypothetical protein BBta_7108 [Bradyrhizobium sp. BTAi1] gb|ABQ38991.1| hypothetical protein BBta_7108 [Bradyrhizobium sp. BTAi1] Length = 294 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 180/282 (63%), Positives = 211/282 (74%), Gaps = 1/282 (0%) Query: 9 ASLRYLFADIIGDEDEGPPVLPDACPDHLGPAVTKAIDLLIAYQSTSYAQLYIDRLKRFV 68 +SLRYLFADIIGD D PP LP PD AV+ I LL+ YQ YAQLY+DRL+RFV Sbjct: 6 SSLRYLFADIIGDADGEPPFLPAGLPDAAAAAVSDGIHLLMDYQGARYAQLYVDRLQRFV 65 Query: 69 GRRGVDDALLAEIARLMAERMAYEDAIRIAQLKLGEVNAVGGLAARSADDVKKFRLDELI 128 R VD A L IA+L+A RMAYED IRIAQL+L E+ A + R DD+++FRLDELI Sbjct: 66 RRSNVDAAALCRIAQLLAARMAYEDPIRIAQLRLAELEAGRAIRGRDGDDLRRFRLDELI 125 Query: 129 DALPAVVADPVLGVLDQFGWR-RRRVSIRFSANNRFSVRRLRIEAGLKRWRLFSGRYARE 187 LP +AD +L +Q GW RRR+ +RFS +R +VRRLR+ AGL+RWRL S RYA E Sbjct: 126 GVLPQALADSLLTGFEQIGWLGRRRLKVRFSTRSRLAVRRLRMMAGLRRWRLQSVRYAEE 185 Query: 188 RVWVERWLHMIDRSLTKQPSAAPAVVQTATMIQGYGDPYRQGIADWHVIIDGLAKPTFDG 247 RVW ERWLHMI R+L KQP+AA AV++TATMIQG GD YRQG+ADWH IIDGL KPTFDG Sbjct: 186 RVWAERWLHMIARALDKQPAAASAVIETATMIQGQGDGYRQGLADWHAIIDGLVKPTFDG 245 Query: 248 VLVLPDLAGAIAEARAATMPDPRQAALKRKIAEIRARAPAVS 289 VL + DLA AIAEARAA MPDPRQAALKR IA+IR +A +V Sbjct: 246 VLPISDLAAAIAEARAAAMPDPRQAALKRAIAQIRVQALSVE 287 >ref|YP_576001.1| hypothetical protein Nham_0653 [Nitrobacter hamburgensis X14] gb|ABE61541.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 290 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 172/282 (60%), Positives = 204/282 (72%), Gaps = 3/282 (1%) Query: 6 GLLASLRYLFADIIGDEDEGPPVLPDACPDHLGPAVTKAIDLLIAYQSTSYAQLYIDRLK 65 G L ++R +FA ++G +D P LP PD + P +A++ LI YQ YAQLY+ RL+ Sbjct: 10 GALPAIRSIFAAVLGGDDNPMPALPAGLPDRVRPVAAEAVNRLIDYQGPGYAQLYVARLR 69 Query: 66 RFVGRRGVDDALLAEIARLMAERMAYEDAIRIAQLKLGEVNAVGGLAARSADDVKKFRLD 125 RF+GRR VDDA+ A+IARLMA RMAY+DA+R+AQLKL E A +A DDV+K RLD Sbjct: 70 RFIGRRNVDDAIFADIARLMAVRMAYDDAVRMAQLKLAEAAAGPDVAP---DDVRKLRLD 126 Query: 126 ELIDALPAVVADPVLGVLDQFGWRRRRVSIRFSANNRFSVRRLRIEAGLKRWRLFSGRYA 185 EL+ +LP VA+PVL L+ GW V +RFSA N F RRLRIEA LKRWRL S RYA Sbjct: 127 ELVSSLPERVANPVLRALEYLGWLHLPVIVRFSAANGFGRRRLRIEASLKRWRLSSLRYA 186 Query: 186 RERVWVERWLHMIDRSLTKQPSAAPAVVQTATMIQGYGDPYRQGIADWHVIIDGLAKPTF 245 RERVWVERWLHMIDRSLTKQP+A AVV TA M+QGYGD Y Q + DW++I+D L KPTF Sbjct: 187 RERVWVERWLHMIDRSLTKQPAAVAAVVATAEMVQGYGDGYTQSLRDWNLIVDHLVKPTF 246 Query: 246 DGVLVLPDLAGAIAEARAATMPDPRQAALKRKIAEIRARAPA 287 DG L PDLAGAI EARAA DPRQ +LKR IA IR RA A Sbjct: 247 DGALSCPDLAGAITEARAAVNSDPRQESLKRVIAGIRERAGA 288 >ref|YP_001203099.1| hypothetical protein BRADO0946 [Bradyrhizobium sp. ORS 278] emb|CAL74862.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 293 Score = 308 bits (788), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 172/280 (61%), Positives = 209/280 (74%), Gaps = 1/280 (0%) Query: 9 ASLRYLFADIIGDEDEGPPVLPDACPDHLGPAVTKAIDLLIAYQSTSYAQLYIDRLKRFV 68 +SLRYLFAD+IGD D PP LPD P+ AV++ I LL+ YQ SYAQLY+DR++RFV Sbjct: 6 SSLRYLFADLIGDHDGEPPFLPDGLPEAAAAAVSEGIHLLMEYQGASYAQLYVDRIRRFV 65 Query: 69 GRRGVDDALLAEIARLMAERMAYEDAIRIAQLKLGEVNAVGGLAARSADDVKKFRLDELI 128 R VD A+L EIA+ +A RMAYED +RIAQL+L ++ R DDV++FRLDELI Sbjct: 66 RRSNVDAAMLGEIAKHLAARMAYEDPVRIAQLRLMSLHGGRRPGGRDTDDVRRFRLDELI 125 Query: 129 DALPAVVADPVLGVLDQFGW-RRRRVSIRFSANNRFSVRRLRIEAGLKRWRLFSGRYARE 187 ALP +AD +L +Q GW RRR+ +R+S +RF+VRRL++ AGL+RWRL S RY E Sbjct: 126 GALPQALADYMLTGFEQVGWLGRRRIKVRYSVRSRFAVRRLKLIAGLRRWRLQSVRYGEE 185 Query: 188 RVWVERWLHMIDRSLTKQPSAAPAVVQTATMIQGYGDPYRQGIADWHVIIDGLAKPTFDG 247 R WVERWLHMI R+L KQP+AAPAV+ TA MIQG GD YRQG+ADWH IIDGLAKPTFDG Sbjct: 186 RAWVERWLHMIARALDKQPAAAPAVIATAEMIQGQGDAYRQGLADWHAIIDGLAKPTFDG 245 Query: 248 VLVLPDLAGAIAEARAATMPDPRQAALKRKIAEIRARAPA 287 L L DL+ AIAEARA + +P Q ALKR IA+IRARA A Sbjct: 246 TLPLHDLSAAIAEARAVALAEPGQGALKRSIAQIRARAMA 285 >ref|ZP_01044587.1| hypothetical protein NB311A_03634 [Nitrobacter sp. Nb-311A] gb|EAQ37368.1| hypothetical protein NB311A_03634 [Nitrobacter sp. Nb-311A] Length = 293 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 153/279 (54%), Positives = 193/279 (69%), Gaps = 4/279 (1%) Query: 7 LLASLRYLFADIIGDEDEGPPVLPDACPDHLGPAVTKAIDLLIAYQSTSYAQLYIDRLKR 66 +L ++R +FA++ G+ + P LP+ P+ A + LI YQ SYAQLYI RL+R Sbjct: 11 VLPAIRSMFANVSGENNSLIPTLPEGMPEDARVAAVDGVKHLIDYQGASYAQLYIARLRR 70 Query: 67 FVGRRGVDDALLAEIARLMAERMAYEDAIRIAQLKLGEVNAVGGLAARSADDVKKFRLDE 126 F+GRR +D + A+IARL+A RMAY+D +R+AQLKL E + + D++K RLDE Sbjct: 71 FIGRRNLDAEVFADIARLLAVRMAYDDPVRMAQLKLAEFR----MGSSVPSDIRKLRLDE 126 Query: 127 LIDALPAVVADPVLGVLDQFGWRRRRVSIRFSANNRFSVRRLRIEAGLKRWRLFSGRYAR 186 L+ LP ADPVL +LD+FGWRR V+IRFSA + +R LRIEA L+RWRL S RYA Sbjct: 127 LVSMLPKRGADPVLSLLDRFGWRRLPVTIRFSAASGIRLRCLRIEASLRRWRLSSLRYAN 186 Query: 187 ERVWVERWLHMIDRSLTKQPSAAPAVVQTATMIQGYGDPYRQGIADWHVIIDGLAKPTFD 246 ERVWVERWLHMIDRSL KQP+A AV+ TA M++GYGD Y Q + DW++IID + KPTFD Sbjct: 187 ERVWVERWLHMIDRSLEKQPAAVAAVIATAEMVRGYGDGYIQSLRDWNLIIDHVVKPTFD 246 Query: 247 GVLVLPDLAGAIAEARAATMPDPRQAALKRKIAEIRARA 285 G +V DL AI EARAA DPRQ LKR I IR RA Sbjct: 247 GAIVCSDLGAAITEARAAVRYDPRQELLKRVIVVIRERA 285 >ref|YP_570724.1| hypothetical protein RPD_3600 [Rhodopseudomonas palustris BisB5] gb|ABE40823.1| hypothetical protein RPD_3600 [Rhodopseudomonas palustris BisB5] Length = 288 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/280 (55%), Positives = 195/280 (69%), Gaps = 4/280 (1%) Query: 11 LRYLFADIIGDEDEGPPV-LPDACPDHLGPAVTKAIDLLIAYQSTSYAQLYIDRLKRFVG 69 +R A+IIG+ D + LPD + P V+ A++ LIA+Q YA+LY+DR+ RF Sbjct: 1 MRSTLAEIIGERDRVVALALPDGLSPAVAPVVSDAVEQLIAFQGRRYARLYLDRIGRFAH 60 Query: 70 RRGVDDALLAEIARLMAERMAYEDAIRIAQLKLGEVNAVG--GLAARSADDVKKFRLDEL 127 RR V D LL EIA+L+A RMAYED IRIAQL L E A+G G+A D +FR+DEL Sbjct: 61 RRDVGDPLLIEIAQLLAMRMAYEDPIRIAQLALAEA-AIGPDGVATNRVDRKCRFRIDEL 119 Query: 128 IDALPAVVADPVLGVLDQFGWRRRRVSIRFSANNRFSVRRLRIEAGLKRWRLFSGRYARE 187 + ALP VVADP+L V+ GW+R V +RF+A +RRLRIE+ L+RWR+ S RYA+E Sbjct: 120 VSALPIVVADPMLDVIGALGWQRLPVKMRFNATGWLGIRRLRIESWLRRWRMLSIRYAKE 179 Query: 188 RVWVERWLHMIDRSLTKQPSAAPAVVQTATMIQGYGDPYRQGIADWHVIIDGLAKPTFDG 247 R+WVERWLHMIDR L K+P A +VQ+ATMI+GYGDPY G+A+W +IID L KP F G Sbjct: 180 RIWVERWLHMIDRCLAKRPEAVWTIVQSATMIRGYGDPYLYGMANWTLIIDSLVKPVFAG 239 Query: 248 VLVLPDLAGAIAEARAATMPDPRQAALKRKIAEIRARAPA 287 L LPDL+ AIAEAR A +PD RQ ALK IA IR RA A Sbjct: 240 ALTLPDLSAAIAEARTAALPDRRQTALKSAIAAIRTRASA 279