BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0258.0016.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774498.1| hypothetical protein bll7858 [Bradyrhizobium ja...   154   3e-36
ref|YP_003126356.1| hypothetical protein Cpin_6754 [Chitinophaga...   110   7e-23
ref|YP_003085761.1| hypothetical protein Dfer_1348 [Dyadobacter ...   106   1e-21
ref|YP_003243594.1| hypothetical protein GYMC10_3550 [Paenibacil...   106   1e-21
ref|ZP_08280886.1| hypothetical protein HMPREF9412_6165 [Paeniba...   104   4e-21

>ref|NP_774498.1| hypothetical protein bll7858 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53123.1| bll7858 [Bradyrhizobium japonicum USDA 110]
          Length = 142

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 93/151 (61%), Gaps = 17/151 (11%)

Query: 4   VLHSTNCFNTLIRVAEDCPAQRGEEPQPRGGPPXRRPADGCRAAIPDDRGRAIQVHLRRR 63
            +H+TNCFNT IRVAEDCPA  GEEP  R G P           +   +   I     + 
Sbjct: 2   TIHTTNCFNTFIRVAEDCPAHTGEEPPLRAGKP----------TVASLQYEMIAKAPYKH 51

Query: 64  RVRDV-------GGRPXAKAAKKARSLVRETFFSRGQACMRASPLGKRFGWGVHADAEGR 116
              DV       G     KA K  +   RE FFSRGQACMRAS LGKRFGWGVHAD+EGR
Sbjct: 52  TSDDVIFATSAPGRELDVKATKTEKRAAREAFFSRGQACMRASSLGKRFGWGVHADSEGR 111

Query: 117 IALYAVDSKRYQALAADPDIAQVRAMRNKRA 147
           IA+YAVDSKRYQAL  DP + QVRAMR+KRA
Sbjct: 112 IAIYAVDSKRYQALVRDPKLTQVRAMRSKRA 142


>ref|YP_003126356.1| hypothetical protein Cpin_6754 [Chitinophaga pinensis DSM 2588]
 gb|ACU64155.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 135

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 18/147 (12%)

Query: 5   LHSTNCFNTLIRVAEDCPAQRGEEPQPRG-----GPPXRRPADGCRAAIPDDRGRAIQVH 59
           + +TN +NT I VA+DCP +  E P  RG             D       DD      VH
Sbjct: 1   MKTTNYYNTFIEVADDCPVKTAEVPPIRGEKTIANIEFELLVDNPYEFTSDDV--LFHVH 58

Query: 60  LRRRRVRDVGGRPXAKAAKKARSLVRETFFSRGQACMRASPLGKRFGWGVHADAEGRIAL 119
             +R++R            +   + RE FFS+GQAC R+SPL KR+GWG H DA+GR+A+
Sbjct: 59  AAKRQLR-----------TQEFDVEREQFFSKGQACFRSSPLTKRYGWGAHFDADGRMAI 107

Query: 120 YAVDSKRYQALAADPDIAQVRAMRNKR 146
           YAV+S  YQ  A D  + QV+AMR+K+
Sbjct: 108 YAVESDEYQQYAKDRSLKQVKAMRSKK 134


>ref|YP_003085761.1| hypothetical protein Dfer_1348 [Dyadobacter fermentans DSM 18053]
 gb|ACT92596.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
          Length = 137

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 78/145 (53%), Gaps = 13/145 (8%)

Query: 5   LHSTNCFNTLIRVAEDCPAQRGEEPQPRGGPPXRRPADGCRAAIPDDRGRAIQVHLRRRR 64
           +H+TN  NT I +A+DCPA  GE P          P  G    +   +   I  +  +  
Sbjct: 3   VHTTNYENTFIEIADDCPAAGGEVP----------PMKGDSKTVAGIQYEMISKNPYKFT 52

Query: 65  VRDVGGRPXAKAAKKARSLV---RETFFSRGQACMRASPLGKRFGWGVHADAEGRIALYA 121
             DV  +  A+      S +   R+ FFS+GQACMRASPL KR+GWG+H D  G+IALYA
Sbjct: 53  SDDVLFQVFAERKDLTESELEDARKQFFSKGQACMRASPLTKRYGWGIHNDGNGKIALYA 112

Query: 122 VDSKRYQALAADPDIAQVRAMRNKR 146
            DS  Y+     PD+  V+AM++ R
Sbjct: 113 CDSPEYKKFTQKPDLKTVKAMKSSR 137


>ref|YP_003243594.1| hypothetical protein GYMC10_3550 [Paenibacillus sp. Y412MC10]
 gb|ACX65787.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 136

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 13/146 (8%)

Query: 5   LHSTNCFNTLIRVAEDCPAQRGEEPQPRGGPPXRRPADGCRAAIPDDRGRAIQVHLRRRR 64
           +   N ++T I++AEDCP      P+ +G              IP  +   +  H  R  
Sbjct: 1   MKDMNEYDTFIQIAEDCPVSEAVIPKAKGES----------RTIPVIQYEMLSNHPYRYT 50

Query: 65  VRDVGGRPXA---KAAKKARSLVRETFFSRGQACMRASPLGKRFGWGVHADAEGRIALYA 121
             DV     A   + ++  R+  RE FFS+GQ C+R S LGKR+GWG+H DAEG++A+YA
Sbjct: 51  QEDVLFEVFAERNQISETERAAAREKFFSKGQPCLRTSSLGKRYGWGIHHDAEGKVAIYA 110

Query: 122 VDSKRYQALAADPDIAQVRAMRNKRA 147
           V+S  Y  L  D  I Q +AMR+K+A
Sbjct: 111 VESDEYLKLMNDQSITQCKAMRSKKA 136


>ref|ZP_08280886.1| hypothetical protein HMPREF9412_6165 [Paenibacillus sp. HGF5]
 gb|EGG35569.1| hypothetical protein HMPREF9412_6165 [Paenibacillus sp. HGF5]
          Length = 136

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 13/146 (8%)

Query: 5   LHSTNCFNTLIRVAEDCPAQRGEEPQPRGGPPXRRPADGCRAAIPDDRGRAIQVHLRRRR 64
           +   N ++T I++AEDCP      P+ +G              IP  +   +  H  R  
Sbjct: 1   MKDMNEYDTFIQIAEDCPVSEAVIPKAKGESK----------TIPVIQYEMLSNHPYRYT 50

Query: 65  VRDVGGRPXAK---AAKKARSLVRETFFSRGQACMRASPLGKRFGWGVHADAEGRIALYA 121
             DV     A+    ++  R   RE FFS+GQ C+R S LGKR+GWG+H DAEG++A+YA
Sbjct: 51  QEDVLFEVFAERNHISETEREAAREKFFSKGQPCLRTSSLGKRYGWGIHHDAEGKVAIYA 110

Query: 122 VDSKRYQALAADPDIAQVRAMRNKRA 147
           V+S  Y     D  I Q +AMR+K+A
Sbjct: 111 VESDEYLRFMNDNSITQCKAMRSKKA 136