BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0008.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774442.1| acyl-CoA synthetase [Bradyrhizobium japonicum U... 461 e-128 ref|YP_001242907.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi... 450 e-124 ref|YP_001203088.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS ... 449 e-124 ref|YP_570731.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 447 e-124 ref|YP_782731.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 438 e-121 >ref|NP_774442.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC53067.1| long-chain-fatty-acid-CoA ligase [Bradyrhizobium japonicum USDA 110] Length = 623 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/256 (84%), Positives = 234/256 (91%), Gaps = 1/256 (0%) Query: 8 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 67 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG Sbjct: 368 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 427 Query: 68 VNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFV 127 VNVTPGYFGQP+LT KMFDEEGFYCIGDAG+FV+ DP++GIIFAGRVVEDFKLTTGTFV Sbjct: 428 VNVTPGYFGQPELTRKMFDEEGFYCIGDAGIFVDDADPVKGIIFAGRVVEDFKLTTGTFV 487 Query: 128 HVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIRHPE 187 HVGSLRTD IAA TPVVHDALVAGQDR FIGLL WPNLHACRQLVGN D S+ED ++HPE Sbjct: 488 HVGSLRTDTIAATTPVVHDALVAGQDRAFIGLLAWPNLHACRQLVGNPDLSFEDAVKHPE 547 Query: 188 VVACLKKGLQAHNASTTGSSMR-IARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV 246 V+AC ++GL+ HN G+S R IARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV Sbjct: 548 VIACFRRGLETHNKECEGASSRIIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV 607 Query: 247 EKLYAGEPGDDVIILN 262 E+LYA +P DV++L Sbjct: 608 ERLYADKPDQDVVVLR 623 >ref|YP_001242907.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi1] gb|ABQ39001.1| Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) [Bradyrhizobium sp. BTAi1] Length = 622 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/255 (83%), Positives = 232/255 (90%), Gaps = 1/255 (0%) Query: 8 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 67 VKTTGERIVFYTGWGSTETAPTSTGTYW+TERVGLIGLPFPGVELKMVP G KYELRLRG Sbjct: 368 VKTTGERIVFYTGWGSTETAPTSTGTYWNTERVGLIGLPFPGVELKMVPTGDKYELRLRG 427 Query: 68 VNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFV 127 +NV PGYFGQP+LT K FDEEGFYCIGDAGVFV+P+DP QGIIFAGRVVEDFKLTTGTFV Sbjct: 428 INVMPGYFGQPELTKKAFDEEGFYCIGDAGVFVDPDDPAQGIIFAGRVVEDFKLTTGTFV 487 Query: 128 HVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIRHPE 187 HVGSLRTDAIAAATP VHDALV GQDR+++GLL WPNLHACRQLVGN +A++ DV++HP Sbjct: 488 HVGSLRTDAIAAATPAVHDALVTGQDRDYVGLLAWPNLHACRQLVGNPEATFADVVKHPA 547 Query: 188 VVACLKKGLQAHNASTTG-SSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV 246 V+ C+++GL+AHN G SS RI RAMLMVEPPSIDG+ELTDKGYINQRAGLERRAALV Sbjct: 548 VIDCVRRGLEAHNKECEGASSRRIGRAMLMVEPPSIDGHELTDKGYINQRAGLERRAALV 607 Query: 247 EKLYAGEPGDDVIIL 261 E+LYA EP DVIIL Sbjct: 608 ERLYAAEPDSDVIIL 622 >ref|YP_001203088.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS 278] emb|CAL74851.1| Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) [Bradyrhizobium sp. ORS 278] Length = 622 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/255 (83%), Positives = 231/255 (90%), Gaps = 1/255 (0%) Query: 8 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 67 VKTTGERIVFYTGWGSTETAPTSTGTYW+TERVGLIGLPFPGVELKMVP G KYELRLRG Sbjct: 368 VKTTGERIVFYTGWGSTETAPTSTGTYWNTERVGLIGLPFPGVELKMVPTGDKYELRLRG 427 Query: 68 VNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFV 127 +NV PGYFGQP+LT K FD+EGFYCIGDAGVFV+P DP QGIIFAGRVVEDFKLTTGTFV Sbjct: 428 INVMPGYFGQPELTRKAFDDEGFYCIGDAGVFVDPNDPAQGIIFAGRVVEDFKLTTGTFV 487 Query: 128 HVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIRHPE 187 HVGSLRTDAIAAATP +HDALVAGQDRE+IGLL WPNLHACRQLVGN A++EDV++HP Sbjct: 488 HVGSLRTDAIAAATPAIHDALVAGQDREYIGLLAWPNLHACRQLVGNPQATFEDVVKHPA 547 Query: 188 VVACLKKGLQAHNASTTG-SSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV 246 V+ C+++GLQAHN G SS RI RAMLMVEPPSIDG+ELTDKGYINQRAGLERRAALV Sbjct: 548 VIDCVRRGLQAHNKECEGASSRRIGRAMLMVEPPSIDGHELTDKGYINQRAGLERRAALV 607 Query: 247 EKLYAGEPGDDVIIL 261 E+LYA P +VI+L Sbjct: 608 ERLYAETPDSEVIVL 622 >ref|YP_570731.1| acyl-CoA synthetase [Rhodopseudomonas palustris BisB5] gb|ABE40830.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] Length = 624 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/256 (82%), Positives = 230/256 (89%), Gaps = 1/256 (0%) Query: 8 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 67 V+ TGER+VFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKM+P G KYELRLRG Sbjct: 369 VRATGERLVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMLPIGDKYELRLRG 428 Query: 68 VNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFV 127 VNV PGY+G+PDLT FDEEGFY IGDAGVFV+P+DP++GIIFAGRVVEDFKL TGTFV Sbjct: 429 VNVMPGYYGRPDLTEAAFDEEGFYKIGDAGVFVDPQDPVKGIIFAGRVVEDFKLMTGTFV 488 Query: 128 HVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIRHPE 187 HVGSLRTDAIAAATPVVHDALVAGQDR FIGLL WPNLHACRQ+VGN DA+YEDV++HP Sbjct: 489 HVGSLRTDAIAAATPVVHDALVAGQDRAFIGLLAWPNLHACRQIVGNPDATYEDVVKHPA 548 Query: 188 VVACLKKGLQAHNASTTG-SSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV 246 V+A LK GL+ HNA G SSMRIARAMLM EPPSIDGNELTDKGYINQRAGLERRAALV Sbjct: 549 VLAALKAGLEKHNAEVRGVSSMRIARAMLMSEPPSIDGNELTDKGYINQRAGLERRAALV 608 Query: 247 EKLYAGEPGDDVIILN 262 E+LYA P DV++L Sbjct: 609 ERLYAQHPDPDVMVLQ 624 >ref|YP_782731.1| acyl-CoA synthetase [Rhodopseudomonas palustris BisA53] gb|ABJ07751.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] Length = 624 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/256 (80%), Positives = 226/256 (88%), Gaps = 1/256 (0%) Query: 8 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 67 ++ TGER VFYTGWGSTET+PTSTGTYWDTERVGLIGLPFPGVELKMVP G KYELRLRG Sbjct: 369 IRATGERFVFYTGWGSTETSPTSTGTYWDTERVGLIGLPFPGVELKMVPIGDKYELRLRG 428 Query: 68 VNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFV 127 VNVTPGY+G+PDLT FDEEGFY IGDAG FV+P DP QGI+FAGRVVEDFKL TGTFV Sbjct: 429 VNVTPGYYGRPDLTEAAFDEEGFYKIGDAGQFVDPNDPGQGIVFAGRVVEDFKLMTGTFV 488 Query: 128 HVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIRHPE 187 HVGSLRTDAIAAATPV+HDALVAGQDR +IGLL WPNLHACRQ VG+++ASY+DV +HP Sbjct: 489 HVGSLRTDAIAAATPVIHDALVAGQDRAYIGLLAWPNLHACRQFVGDSEASYDDVAKHPA 548 Query: 188 VVACLKKGLQAHNASTTG-SSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALV 246 V+ CL+ GL+AHNA G SSMRIAR MLM EPPSIDGNELTDKGYINQRAGLERRAALV Sbjct: 549 VLDCLRNGLEAHNAEVEGASSMRIARVMLMTEPPSIDGNELTDKGYINQRAGLERRAALV 608 Query: 247 EKLYAGEPGDDVIILN 262 E+LYA P DV++L Sbjct: 609 ERLYAEHPDADVMVLQ 624