BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0004.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774445.1| transcriptional regulator [Bradyrhizobium japon... 379 e-103 ref|YP_001242910.1| TetR family transcriptional regulator [Brady... 345 3e-93 ref|YP_001203085.1| TetR family transcriptional regulator [Brady... 339 1e-91 ref|YP_782733.1| TetR family transcriptional regulator [Rhodopse... 338 2e-91 ref|YP_532068.1| TetR family transcriptional regulator [Rhodopse... 337 9e-91 >ref|NP_774445.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53070.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/215 (83%), Positives = 198/215 (92%) Query: 3 TSVPTKLPAGKNATADKLLVAASELMIERASIEVSLSDIAQKSGVNAALVKYHFGNKDGL 62 TSVPTKLP+GKN+TA+KLLVAASELMIER+SIE+SLSDIAQKSG NAALVKYHFGNKDGL Sbjct: 36 TSVPTKLPSGKNSTAEKLLVAASELMIERSSIEISLSDIAQKSGANAALVKYHFGNKDGL 95 Query: 63 LLALLARDAATEISQLEYLISQPITPSAKLRLHIGGIIRAYHQFPYMNRLIHYLLHESSP 122 LLALL RDA TE+S LEYL++QPITP+AKL+LHIGGIIRAYH+FPYMNRLIHYLLHES Sbjct: 96 LLALLERDAGTELSNLEYLLAQPITPTAKLKLHIGGIIRAYHRFPYMNRLIHYLLHESVA 155 Query: 123 AAANEVSKFFVAPLLDFHRRLLAEGIKAGEFRKIDPVLFYTSLIGACDHLFFGRHAMSRA 182 +A+EVSKFFVAPLLDFHRRLLAEG+ +GEFR+ DPVLFYTSLIGACDHLFFGRHAMSRA Sbjct: 156 GSADEVSKFFVAPLLDFHRRLLAEGVSSGEFRQTDPVLFYTSLIGACDHLFFGRHAMSRA 215 Query: 183 VGVGPVTDEVCREYIKHMEALIFGGVLNPDKETAA 217 GVGPVTDEVCR+YIKHME LI GG+L + AA Sbjct: 216 TGVGPVTDEVCRQYIKHMETLICGGILTQAGDAAA 250 >ref|YP_001242910.1| TetR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ39004.1| transcriptional regulator, TetR family [Bradyrhizobium sp. BTAi1] Length = 219 Score = 345 bits (885), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 173/210 (82%), Positives = 193/210 (91%) Query: 1 LNTSVPTKLPAGKNATADKLLVAASELMIERASIEVSLSDIAQKSGVNAALVKYHFGNKD 60 L SVP KLPAG+NATA+KLL AASELMI R+SIE+SLSDIAQKSG NAALVKYHFGNKD Sbjct: 5 LQNSVPEKLPAGRNATAEKLLDAASELMIARSSIEISLSDIAQKSGANAALVKYHFGNKD 64 Query: 61 GLLLALLARDAATEISQLEYLISQPITPSAKLRLHIGGIIRAYHQFPYMNRLIHYLLHES 120 GLLLALLARDAATE++ LEYL++QPI+P+AKL+LHI GIIRAYH+FPYMNRLIHYLLHES Sbjct: 65 GLLLALLARDAATEVANLEYLLAQPISPTAKLKLHISGIIRAYHRFPYMNRLIHYLLHES 124 Query: 121 SPAAANEVSKFFVAPLLDFHRRLLAEGIKAGEFRKIDPVLFYTSLIGACDHLFFGRHAMS 180 S AA+EVSKFFVAPLLDFHRRL+ EG+ GEFR +DPVLFYTSLIGACDHLFFGRHAMS Sbjct: 125 SAEAADEVSKFFVAPLLDFHRRLIEEGVAQGEFRAVDPVLFYTSLIGACDHLFFGRHAMS 184 Query: 181 RAVGVGPVTDEVCREYIKHMEALIFGGVLN 210 RA+GVGPVTD+VCR+YI HMEALI GG+L Sbjct: 185 RAIGVGPVTDDVCRQYIAHMEALICGGILQ 214 >ref|YP_001203085.1| TetR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL74848.1| putative transcriptional regulator, TetR family [Bradyrhizobium sp. ORS 278] Length = 219 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 170/210 (80%), Positives = 192/210 (91%) Query: 1 LNTSVPTKLPAGKNATADKLLVAASELMIERASIEVSLSDIAQKSGVNAALVKYHFGNKD 60 L SVP KL G+NATA+KLL AASELMI+R+SIE+SLSDIAQKSG NAALVKYHFGNKD Sbjct: 5 LQNSVPEKLAVGRNATAEKLLDAASELMIQRSSIEISLSDIAQKSGSNAALVKYHFGNKD 64 Query: 61 GLLLALLARDAATEISQLEYLISQPITPSAKLRLHIGGIIRAYHQFPYMNRLIHYLLHES 120 GLLLALLARDAATE++ LEYL++QP+ P+AKL+LHI GIIRAYH+FPYMNRLIHYLLHES Sbjct: 65 GLLLALLARDAATEVANLEYLLAQPLPPTAKLKLHISGIIRAYHRFPYMNRLIHYLLHES 124 Query: 121 SPAAANEVSKFFVAPLLDFHRRLLAEGIKAGEFRKIDPVLFYTSLIGACDHLFFGRHAMS 180 SP AA+EVSKFFVAPLL+FHRRL+ EG+ GEFR +DPVLFYTSLIGACDHLFFGRHAMS Sbjct: 125 SPEAADEVSKFFVAPLLEFHRRLIEEGVAKGEFRAVDPVLFYTSLIGACDHLFFGRHAMS 184 Query: 181 RAVGVGPVTDEVCREYIKHMEALIFGGVLN 210 RA+GVGPVTD+VCR+YI HMEALI GG+L Sbjct: 185 RAIGVGPVTDDVCRQYIAHMEALICGGILK 214 >ref|YP_782733.1| TetR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ07753.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris BisA53] Length = 223 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 161/210 (76%), Positives = 182/210 (86%) Query: 1 LNTSVPTKLPAGKNATADKLLVAASELMIERASIEVSLSDIAQKSGVNAALVKYHFGNKD 60 LNT P + AG N+TADKLLVAA ELM+ER SIEVSLSDIA KSGVNAALVKYHFGNKD Sbjct: 4 LNTITPHRYVAGHNSTADKLLVAAGELMVERNSIEVSLSDIAHKSGVNAALVKYHFGNKD 63 Query: 61 GLLLALLARDAATEISQLEYLISQPITPSAKLRLHIGGIIRAYHQFPYMNRLIHYLLHES 120 GLLL+LL RDAA E++ LE L++QPIT + KLRLHI GIIRAY+QFPYMNRLIHYLLHES Sbjct: 64 GLLLSLLERDAAAEMATLEILMAQPITATQKLRLHIAGIIRAYYQFPYMNRLIHYLLHES 123 Query: 121 SPAAANEVSKFFVAPLLDFHRRLLAEGIKAGEFRKIDPVLFYTSLIGACDHLFFGRHAMS 180 AA+EVSKFFV PLLDFHRRLLAEG+ +GEFR +DPV FYTSL+GACDHLFFGRH+M+ Sbjct: 124 GNEAADEVSKFFVGPLLDFHRRLLAEGVASGEFRAVDPVFFYTSLVGACDHLFFGRHSMA 183 Query: 181 RAVGVGPVTDEVCREYIKHMEALIFGGVLN 210 RA+GVGPVTD+VCR+YI HME LI G+L Sbjct: 184 RAIGVGPVTDQVCRDYILHMENLIVHGMLT 213 >ref|YP_532068.1| TetR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD87749.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris BisB18] Length = 220 Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 154/209 (73%), Positives = 183/209 (87%) Query: 1 LNTSVPTKLPAGKNATADKLLVAASELMIERASIEVSLSDIAQKSGVNAALVKYHFGNKD 60 L+T+V +LPA KN TAD+LLVAA ELM ER SI+VSL DIA K+GVNAALVKYHFGNKD Sbjct: 4 LSTNVSHRLPASKNTTADRLLVAAGELMTERNSIDVSLHDIAVKAGVNAALVKYHFGNKD 63 Query: 61 GLLLALLARDAATEISQLEYLISQPITPSAKLRLHIGGIIRAYHQFPYMNRLIHYLLHES 120 GL+LALL RDA TE++ LEYL++QPI+P+AK+RLHI GII+ YHQFPYMNRLIHY+LHES Sbjct: 64 GLMLALLERDAVTEMANLEYLLAQPISPAAKMRLHIAGIIKTYHQFPYMNRLIHYMLHES 123 Query: 121 SPAAANEVSKFFVAPLLDFHRRLLAEGIKAGEFRKIDPVLFYTSLIGACDHLFFGRHAMS 180 S AA+EVSKFFV PLLDF RRLLA+G+ AG+FR +DPVLFYTSL+GACDHLFF RH+++ Sbjct: 124 SAEAADEVSKFFVGPLLDFQRRLLAQGVAAGQFRNVDPVLFYTSLVGACDHLFFSRHSIT 183 Query: 181 RAVGVGPVTDEVCREYIKHMEALIFGGVL 209 RA GVGP+TD+VCR+YI HME LI G+L Sbjct: 184 RATGVGPITDQVCRDYIVHMETLILDGLL 212