BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0257.0018.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773153.1| hypothetical protein bll6513 [Bradyrhizobium ja... 548 e-154 ref|ZP_08630916.1| tricarboxylate transport protein [Bradyrhizob... 509 e-142 ref|YP_781072.1| hypothetical protein RPE_2148 [Rhodopseudomonas... 484 e-134 ref|YP_570481.1| hypothetical protein RPD_3356 [Rhodopseudomonas... 482 e-134 ref|YP_533128.1| hypothetical protein RPC_3267 [Rhodopseudomonas... 457 e-126 >ref|NP_773153.1| hypothetical protein bll6513 [Bradyrhizobium japonicum USDA 110] dbj|BAC51778.1| bll6513 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 290/326 (88%), Positives = 308/326 (94%) Query: 1 MMSIRSLAGACLSAIVALGAFAVPASAQNYPTRTITMIVPFAAGGPTDVISRIVTAHMAQ 60 M IR+LAGAC +A +L AF P+ AQ YPTR ITMIVPFAAGGPTDVISRIVTAHMAQ Sbjct: 1 MTFIRALAGACAAAAASLCAFVAPSQAQTYPTRGITMIVPFAAGGPTDVISRIVTAHMAQ 60 Query: 61 TLGQSIVIENVVGAGGTTATTRAARAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFE 120 TLGQSIVIENVVGAGGTTAT RAARAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFE Sbjct: 61 TLGQSIVIENVVGAGGTTATARAARAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFE 120 Query: 121 PVALLAGTPILILARKDFPPKDLKEFVTYVKANAEKVNAAHAGIGSVSHASCELLNSILG 180 P+ALLAGTPILILARKDFPPKDLKEFVTYVKANAEKVNAAHAG+GSVSH SCELL++IL Sbjct: 121 PIALLAGTPILILARKDFPPKDLKEFVTYVKANAEKVNAAHAGVGSVSHVSCELLHAILD 180 Query: 181 IKPVGVPFNGTGPAMNALVAGQVDYMCDQIVNAVPQINAGTIKAYAVATPERNPSLPNVP 240 IKPVGVPFNGTGPAMNALVAGQVDYMCDQIVNAVPQINAGTIKAYA+AT ERNPSLPNVP Sbjct: 181 IKPVGVPFNGTGPAMNALVAGQVDYMCDQIVNAVPQINAGTIKAYAIATAERNPSLPNVP 240 Query: 241 TTTEAGLPAFQAQAWNAIFAPKGTSPAIIATLNAAAIKALDDENVRRRLLELGSVIPAPA 300 TTTEAGLPAFQAQAWNA+FAPKGTSPAI+A+LNAAA+KAL+DE VR+RLLELGSVIP P Sbjct: 241 TTTEAGLPAFQAQAWNAMFAPKGTSPAIVASLNAAAVKALEDETVRKRLLELGSVIPGPK 300 Query: 301 NRTPEALATLIKNEIAKWTPVLKPAT 326 +RTPEALATL+KNEIAKWTPVLKPA+ Sbjct: 301 DRTPEALATLVKNEIAKWTPVLKPAS 326 >ref|ZP_08630916.1| tricarboxylate transport protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06448.1| tricarboxylate transport protein [Bradyrhizobiaceae bacterium SG-6C] Length = 327 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/320 (77%), Positives = 276/320 (86%) Query: 5 RSLAGACLSAIVALGAFAVPASAQNYPTRTITMIVPFAAGGPTDVISRIVTAHMAQTLGQ 64 R LA SA+ A G A P AQ+YPTR ITMIVPFAAGGPTDVI+RIVT HM QTLGQ Sbjct: 6 RMLATCGFSALTAAGLAAGPVQAQDYPTRNITMIVPFAAGGPTDVIARIVTGHMQQTLGQ 65 Query: 65 SIVIENVVGAGGTTATTRAARAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFEPVAL 124 +IVIENVVGAGGTTA+TRA++AA DGYTLITGHMGTHAASVPLYPKLAYHP +DFEPV L Sbjct: 66 TIVIENVVGAGGTTASTRASKAAPDGYTLITGHMGTHAASVPLYPKLAYHPSRDFEPVGL 125 Query: 125 LAGTPILILARKDFPPKDLKEFVTYVKANAEKVNAAHAGIGSVSHASCELLNSILGIKPV 184 +AGTPILILARKDFPPKDLKEFV Y+KAN +K+N AHAG+GSVS+ SC+LL+S+L I P Sbjct: 126 VAGTPILILARKDFPPKDLKEFVAYLKANTDKLNEAHAGVGSVSYTSCQLLDSVLKINPT 185 Query: 185 GVPFNGTGPAMNALVAGQVDYMCDQIVNAVPQINAGTIKAYAVATPERNPSLPNVPTTTE 244 GVPFNGTGPAMNALV GQVDYMCDQIVNAVPQI GTIKAYAVATPERNPSLP+VPTT E Sbjct: 186 GVPFNGTGPAMNALVGGQVDYMCDQIVNAVPQIKGGTIKAYAVATPERNPSLPDVPTTAE 245 Query: 245 AGLPAFQAQAWNAIFAPKGTSPAIIATLNAAAIKALDDENVRRRLLELGSVIPAPANRTP 304 AGLP +QAQAWNAIFAPKGT I+A LNAA +KALDDE V++RLL+LGSVIP P RTP Sbjct: 246 AGLPEYQAQAWNAIFAPKGTPAPIVAKLNAALVKALDDEGVKKRLLDLGSVIPKPEERTP 305 Query: 305 EALATLIKNEIAKWTPVLKP 324 E+L L+ +EI KW+ VLKP Sbjct: 306 ESLKKLVDSEITKWSGVLKP 325 >ref|YP_781072.1| hypothetical protein RPE_2148 [Rhodopseudomonas palustris BisA53] gb|ABJ06092.1| Uncharacterized protein UPF0065 [Rhodopseudomonas palustris BisA53] Length = 332 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 257/325 (79%), Positives = 284/325 (87%), Gaps = 4/325 (1%) Query: 4 IRSLAGACLSAIVALGAFA---VPASAQNYPTRTITMIVPFAAGGPTDVISRIVTAHMAQ 60 +R L G L A A G F+ PA A +YP+R+ITMIVPFAAGGPTDV++RIV HM+ Sbjct: 7 LRKL-GRLLCAAGAAGVFSPALSPAFAADYPSRSITMIVPFAAGGPTDVVARIVAQHMST 65 Query: 61 TLGQSIVIENVVGAGGTTATTRAARAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFE 120 TLGQ+IVIEN+VGAGGTTAT RAARA NDGYTLITGHMGTHAA+VPLYPKLAYHPEKDFE Sbjct: 66 TLGQAIVIENMVGAGGTTATARAARAPNDGYTLITGHMGTHAAAVPLYPKLAYHPEKDFE 125 Query: 121 PVALLAGTPILILARKDFPPKDLKEFVTYVKANAEKVNAAHAGIGSVSHASCELLNSILG 180 P+ALLAGTPILILARKD PPKDLKEF+ YVK N +N AHAG+GSVSH SC+LLNSILG Sbjct: 126 PIALLAGTPILILARKDLPPKDLKEFIAYVKDNTAHLNLAHAGVGSVSHVSCQLLNSILG 185 Query: 181 IKPVGVPFNGTGPAMNALVAGQVDYMCDQIVNAVPQINAGTIKAYAVATPERNPSLPNVP 240 IKP GVPFNGTGPAMNALVAGQVD+MCDQIVNAVPQI GTIKAYA+ATP RNP+LP++P Sbjct: 186 IKPTGVPFNGTGPAMNALVAGQVDFMCDQIVNAVPQIKGGTIKAYAIATPARNPALPDLP 245 Query: 241 TTTEAGLPAFQAQAWNAIFAPKGTSPAIIATLNAAAIKALDDENVRRRLLELGSVIPAPA 300 TTTEAGLPAFQAQAWNAIFAPKGT +IIATLNAAA KALDDE VR+RLL+LGSVIP PA Sbjct: 246 TTTEAGLPAFQAQAWNAIFAPKGTPASIIATLNAAAAKALDDEGVRKRLLDLGSVIPTPA 305 Query: 301 NRTPEALATLIKNEIAKWTPVLKPA 325 RTPEALA L+ +EIAKWTPVL+ A Sbjct: 306 ERTPEALARLVADEIAKWTPVLQQA 330 >ref|YP_570481.1| hypothetical protein RPD_3356 [Rhodopseudomonas palustris BisB5] gb|ABE40580.1| Uncharacterized protein UPF0065 [Rhodopseudomonas palustris BisB5] Length = 328 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 249/322 (77%), Positives = 276/322 (85%), Gaps = 8/322 (2%) Query: 12 LSAIVALGAFAV--------PASAQNYPTRTITMIVPFAAGGPTDVISRIVTAHMAQTLG 63 + ++ LG FA P A +YP RTITMIVPFAAGGPTDVI+RIVT HM+ TLG Sbjct: 4 FARLLRLGGFACAAGALLSTPTLAADYPVRTITMIVPFAAGGPTDVIARIVTQHMSATLG 63 Query: 64 QSIVIENVVGAGGTTATTRAARAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFEPVA 123 Q+IVIENVVGAGGTTATTRAARA DGYTLITGHMGTHAA+VPLYPKLAYHPEKDFEPV+ Sbjct: 64 QAIVIENVVGAGGTTATTRAARATPDGYTLITGHMGTHAAAVPLYPKLAYHPEKDFEPVS 123 Query: 124 LLAGTPILILARKDFPPKDLKEFVTYVKANAEKVNAAHAGIGSVSHASCELLNSILGIKP 183 LLAGTPILILAR DFPPKDL EF++YVKAN+EK+N AHAG+GSVSH SC+LLNS+L IKP Sbjct: 124 LLAGTPILILARSDFPPKDLSEFISYVKANSEKLNQAHAGVGSVSHVSCQLLNSVLAIKP 183 Query: 184 VGVPFNGTGPAMNALVAGQVDYMCDQIVNAVPQINAGTIKAYAVATPERNPSLPNVPTTT 243 GVPFNGTGPAMNALV QVD+MCDQIVNAVPQI GTIK YA+ATP RNPSLP V TTT Sbjct: 184 TGVPFNGTGPAMNALVGKQVDFMCDQIVNAVPQIKGGTIKGYAIATPARNPSLPEVLTTT 243 Query: 244 EAGLPAFQAQAWNAIFAPKGTSPAIIATLNAAAIKALDDENVRRRLLELGSVIPAPANRT 303 E GLPAF+AQAWNAIFAPKGT I+ATLNAA KALDDE+VR+RLL+LGSVIP PA RT Sbjct: 244 EGGLPAFKAQAWNAIFAPKGTPAPIVATLNAAVTKALDDESVRKRLLDLGSVIPEPAERT 303 Query: 304 PEALATLIKNEIAKWTPVLKPA 325 PEAL L+++EIAKWTPVL+ A Sbjct: 304 PEALGKLVESEIAKWTPVLRDA 325 >ref|YP_533128.1| hypothetical protein RPC_3267 [Rhodopseudomonas palustris BisB18] gb|ABD88809.1| Uncharacterized protein UPF0065 [Rhodopseudomonas palustris BisB18] Length = 328 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/298 (78%), Positives = 267/298 (89%) Query: 25 ASAQNYPTRTITMIVPFAAGGPTDVISRIVTAHMAQTLGQSIVIENVVGAGGTTATTRAA 84 A+A +YP+R +T+IVPFAAGGPTDV++RIVT HMA+TLGQS+VIENVVGAGGTTATTRAA Sbjct: 26 AAADDYPSRPVTVIVPFAAGGPTDVLARIVTVHMARTLGQSMVIENVVGAGGTTATTRAA 85 Query: 85 RAANDGYTLITGHMGTHAASVPLYPKLAYHPEKDFEPVALLAGTPILILARKDFPPKDLK 144 RA N+GYTLI GHMGTHAA+VPLY KLAY P+ DFEPV LLAGTPI+ILARKDFP +L+ Sbjct: 86 RAPNNGYTLIVGHMGTHAAAVPLYSKLAYDPQTDFEPVGLLAGTPIVILARKDFPANNLR 145 Query: 145 EFVTYVKANAEKVNAAHAGIGSVSHASCELLNSILGIKPVGVPFNGTGPAMNALVAGQVD 204 EFV YV+AN EK+NAAHAG+GSVSHAS ELLNSILGI+P GVP+NGTGPAMNALV GQVD Sbjct: 146 EFVAYVQANTEKLNAAHAGLGSVSHASGELLNSILGIRPTGVPYNGTGPAMNALVGGQVD 205 Query: 205 YMCDQIVNAVPQINAGTIKAYAVATPERNPSLPNVPTTTEAGLPAFQAQAWNAIFAPKGT 264 YMCDQIVNAVPQ+ +GTIKAYAVAT +RNPSLP+VPTT EAGLP + QAWNA FAPKGT Sbjct: 206 YMCDQIVNAVPQVKSGTIKAYAVATQQRNPSLPDVPTTAEAGLPELEVQAWNAFFAPKGT 265 Query: 265 SPAIIATLNAAAIKALDDENVRRRLLELGSVIPAPANRTPEALATLIKNEIAKWTPVL 322 PA+IATLNAA KALDD VR++LL+LGSVIP PA RTPEALA L+++EIA+WTP+L Sbjct: 266 PPAVIATLNAAVSKALDDAVVRKQLLDLGSVIPTPAERTPEALAALVRSEIARWTPLL 323