BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0257.0007.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773142.1| hypothetical protein bll6502 [Bradyrhizobium ja... 541 e-152 ref|YP_569235.1| hypothetical protein RPD_2099 [Rhodopseudomonas... 520 e-145 ref|YP_781112.1| hypothetical protein RPE_2188 [Rhodopseudomonas... 494 e-138 ref|YP_533115.1| hypothetical protein RPC_3254 [Rhodopseudomonas... 487 e-135 ref|YP_001241919.1| hypothetical protein BBta_6086 [Bradyrhizobi... 483 e-134 >ref|NP_773142.1| hypothetical protein bll6502 [Bradyrhizobium japonicum USDA 110] dbj|BAC51767.1| bll6502 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 291/328 (88%), Positives = 304/328 (92%), Gaps = 2/328 (0%) Query: 1 MFDLNELERAHRIVGTAVPATPAHAWPLLAERLGAEVVVKHENHTPTGAFKVRGGLVYLE 60 MFDL ELERA IVG AVPATPAHAWPLLAERLG VVVKHENHTP GAFKVRGGLVYLE Sbjct: 1 MFDLKELERALDIVGQAVPATPAHAWPLLAERLGTRVVVKHENHTPIGAFKVRGGLVYLE 60 Query: 61 RLKRERPDVPGIISATRGNHGQSLAFAAGRHGVQAVIYVPRGNSVEKNRAMHAFGAELVE 120 RLKRERP++PGIISATRGNHGQSLAFAA RHGV AVIYVPRGNSVEKNRAM AFGAELVE Sbjct: 61 RLKRERPNIPGIISATRGNHGQSLAFAASRHGVPAVIYVPRGNSVEKNRAMKAFGAELVE 120 Query: 121 HGDDFQAAREEAERRAQFAGLHMVPSFHPDLVLGVATYALELFRTAPDLDILYMPIGQGS 180 HG+DFQAA EEA+RRAQF GLHMVPSFHPDLV GVATYALELFRTAPDLD+LY+PIGQGS Sbjct: 121 HGEDFQAAAEEAQRRAQFTGLHMVPSFHPDLVRGVATYALELFRTAPDLDVLYVPIGQGS 180 Query: 181 GICGCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTTETSNTLADGMATRIPDADA 240 GI GCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTT+TSNTLADGMATRIPDADA Sbjct: 181 GISGCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTTKTSNTLADGMATRIPDADA 240 Query: 241 FALIRKGASRIVQVSDDEVGQAIRAYWTDTHNLAEGAGAAALAAALQEKNRLAGKRVGLI 300 FALIRKGASRIVQV+DDEV AIRAYWTDTHNLAEGAGAAALAAALQEK +L+GKRVGL+ Sbjct: 241 FALIRKGASRIVQVTDDEVAAAIRAYWTDTHNLAEGAGAAALAAALQEKTKLSGKRVGLV 300 Query: 301 LSGGNIDFDLFRTWIGTDAAPAAQRAVA 328 LSGGNIDFDLF+ W+ DA P QR VA Sbjct: 301 LSGGNIDFDLFKRWVMADAPP--QRVVA 326 >ref|YP_569235.1| hypothetical protein RPD_2099 [Rhodopseudomonas palustris BisB5] gb|ABE39334.1| Pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Rhodopseudomonas palustris BisB5] Length = 328 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/322 (77%), Positives = 282/322 (87%) Query: 1 MFDLNELERAHRIVGTAVPATPAHAWPLLAERLGAEVVVKHENHTPTGAFKVRGGLVYLE 60 MF+L +LE A +VG A+P TPA WPLLAERLG +VVVKHENHTPTGAFKVRGGLVY++ Sbjct: 1 MFNLQQLESARSVVGAAMPPTPALRWPLLAERLGTDVVVKHENHTPTGAFKVRGGLVYVD 60 Query: 61 RLKRERPDVPGIISATRGNHGQSLAFAAGRHGVQAVIYVPRGNSVEKNRAMHAFGAELVE 120 RLKRERP G+ISATRGNHGQSLAFAA RHG+ I VPRGNS+EKNRA+ AFGA+L+E Sbjct: 61 RLKRERPRTAGLISATRGNHGQSLAFAATRHGLPVTIVVPRGNSIEKNRAIRAFGAKLIE 120 Query: 121 HGDDFQAAREEAERRAQFAGLHMVPSFHPDLVLGVATYALELFRTAPDLDILYMPIGQGS 180 +GDDFQAAREEA RRA+ +GL +VP+F PDLVLGVATYALELFR APDLDILY+PIGQGS Sbjct: 121 YGDDFQAAREEAGRRAESSGLEVVPAFQPDLVLGVATYALELFRQAPDLDILYVPIGQGS 180 Query: 181 GICGCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTTETSNTLADGMATRIPDADA 240 GICGCI+ARDLLGLKT+IVGVQST+APSYALSFAAG +VTTETS+TLADG+ATRIPD DA Sbjct: 181 GICGCILARDLLGLKTDIVGVQSTQAPSYALSFAAGAVVTTETSDTLADGLATRIPDPDA 240 Query: 241 FALIRKGASRIVQVSDDEVGQAIRAYWTDTHNLAEGAGAAALAAALQEKNRLAGKRVGLI 300 +IR GASRIVQV+D E+ AIR YWTDTHNLAEGAGAA+LAA +QEK R+ GKRVGLI Sbjct: 241 LEIIRNGASRIVQVTDAEIAAAIRTYWTDTHNLAEGAGAASLAAVMQEKARIHGKRVGLI 300 Query: 301 LSGGNIDFDLFRTWIGTDAAPA 322 LSGGNIDFDLF W+G D A A Sbjct: 301 LSGGNIDFDLFNRWVGPDVAVA 322 >ref|YP_781112.1| hypothetical protein RPE_2188 [Rhodopseudomonas palustris BisA53] gb|ABJ06132.1| Pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Rhodopseudomonas palustris BisA53] Length = 329 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/315 (77%), Positives = 277/315 (87%) Query: 1 MFDLNELERAHRIVGTAVPATPAHAWPLLAERLGAEVVVKHENHTPTGAFKVRGGLVYLE 60 MFDL +LE A +VG A+P+TPAH WPLL+ERLGA VVVKHENHTPTGAFKVRGGLVY++ Sbjct: 1 MFDLQQLEHARGVVGAAMPSTPAHRWPLLSERLGANVVVKHENHTPTGAFKVRGGLVYVD 60 Query: 61 RLKRERPDVPGIISATRGNHGQSLAFAAGRHGVQAVIYVPRGNSVEKNRAMHAFGAELVE 120 RLKRERP G+ISATRGNHGQSLAFAA RHG+ I VPRGNS+EKNRAM AFGAEL+E Sbjct: 61 RLKRERPQTAGLISATRGNHGQSLAFAATRHGLPVTIVVPRGNSIEKNRAMRAFGAELLE 120 Query: 121 HGDDFQAAREEAERRAQFAGLHMVPSFHPDLVLGVATYALELFRTAPDLDILYMPIGQGS 180 +GDDFQAAREEA RRA+ +GL +VP+FHPDLVLGVATYALEL R PDLDILY+PIGQGS Sbjct: 121 YGDDFQAAREEAGRRAESSGLELVPAFHPDLVLGVATYALELLREVPDLDILYVPIGQGS 180 Query: 181 GICGCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTTETSNTLADGMATRIPDADA 240 GICGCI+ARDLLGL TEIVGVQST+APSYALS AAG +VTTETS+T+ADG+ATRIPD DA Sbjct: 181 GICGCILARDLLGLTTEIVGVQSTQAPSYALSLAAGTVVTTETSDTMADGLATRIPDPDA 240 Query: 241 FALIRKGASRIVQVSDDEVGQAIRAYWTDTHNLAEGAGAAALAAALQEKNRLAGKRVGLI 300 A+IRKGASRIVQV+D E+ A+RAYWTDTHNLAEGAGAA LAAA Q+ ++ GKRVGL+ Sbjct: 241 LAIIRKGASRIVQVTDAEIATAMRAYWTDTHNLAEGAGAAPLAAATQDTAKIRGKRVGLV 300 Query: 301 LSGGNIDFDLFRTWI 315 LSGGNID DLF W+ Sbjct: 301 LSGGNIDLDLFNRWV 315 >ref|YP_533115.1| hypothetical protein RPC_3254 [Rhodopseudomonas palustris BisB18] gb|ABD88796.1| Pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Rhodopseudomonas palustris BisB18] Length = 330 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 244/314 (77%), Positives = 273/314 (86%) Query: 1 MFDLNELERAHRIVGTAVPATPAHAWPLLAERLGAEVVVKHENHTPTGAFKVRGGLVYLE 60 MFDL +LE A +VG A+P TPAH WPLL+ERLGA+VVVKHENHTPTGAFKVRGGLVY++ Sbjct: 1 MFDLQQLEHARSVVGAAMPPTPAHRWPLLSERLGADVVVKHENHTPTGAFKVRGGLVYVD 60 Query: 61 RLKRERPDVPGIISATRGNHGQSLAFAAGRHGVQAVIYVPRGNSVEKNRAMHAFGAELVE 120 RLKRERP G+ISATRGNHGQSLA+AA RHG+ I VPRGNS EKNRAM AFGAELVE Sbjct: 61 RLKRERPRTAGLISATRGNHGQSLAYAATRHGLPVTIVVPRGNSPEKNRAMRAFGAELVE 120 Query: 121 HGDDFQAAREEAERRAQFAGLHMVPSFHPDLVLGVATYALELFRTAPDLDILYMPIGQGS 180 HGDDFQAAREEA RR + +GL MVP+FH DLVLGVATYALEL R PDL++LY+PIGQGS Sbjct: 121 HGDDFQAAREEAGRRGEGSGLEMVPAFHRDLVLGVATYALELLRATPDLEVLYVPIGQGS 180 Query: 181 GICGCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTTETSNTLADGMATRIPDADA 240 GICGCI+ARDLLGL TEIVGVQST+APSYALSFAAG +VTTE+S+TLADG+ATRIPD DA Sbjct: 181 GICGCILARDLLGLSTEIVGVQSTQAPSYALSFAAGTVVTTESSDTLADGLATRIPDPDA 240 Query: 241 FALIRKGASRIVQVSDDEVGQAIRAYWTDTHNLAEGAGAAALAAALQEKNRLAGKRVGLI 300 A+IR GASRIVQV+D + AIR YWTDTHNLAEGAGAA LAAA Q+K ++ GKRVGL+ Sbjct: 241 LAIIRNGASRIVQVTDAAIATAIRTYWTDTHNLAEGAGAAPLAAAAQDKAKIRGKRVGLV 300 Query: 301 LSGGNIDFDLFRTW 314 LSGGNIDFDLF W Sbjct: 301 LSGGNIDFDLFSRW 314 >ref|YP_001241919.1| hypothetical protein BBta_6086 [Bradyrhizobium sp. BTAi1] gb|ABQ38013.1| putative Threonine dehydratase (Threonine ammonia-lyase) [Bradyrhizobium sp. BTAi1] Length = 327 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 246/315 (78%), Positives = 276/315 (87%) Query: 1 MFDLNELERAHRIVGTAVPATPAHAWPLLAERLGAEVVVKHENHTPTGAFKVRGGLVYLE 60 MF L ELE AH IVG AVPATPAHAWPLLA RLGA VVVKHENHTP GAFKVRGGLVY++ Sbjct: 1 MFTLAELEAAHAIVGAAVPATPAHAWPLLAARLGAGVVVKHENHTPAGAFKVRGGLVYVD 60 Query: 61 RLKRERPDVPGIISATRGNHGQSLAFAAGRHGVQAVIYVPRGNSVEKNRAMHAFGAELVE 120 LKR +PDV G+I+ATRGNHGQS+AFA R+G+ IYVPRGNSVEKNRAM AFGAEL+E Sbjct: 61 NLKRTQPDVRGLITATRGNHGQSVAFAGRRNGLPVTIYVPRGNSVEKNRAMAAFGAELIE 120 Query: 121 HGDDFQAAREEAERRAQFAGLHMVPSFHPDLVLGVATYALELFRTAPDLDILYMPIGQGS 180 +G DFQ +REEA R A GLHMVPSFHPDLV GVATYALELFR+APDLD+LY+ IGQGS Sbjct: 121 NGSDFQESREEAGRHAARDGLHMVPSFHPDLVRGVATYALELFRSAPDLDVLYVSIGQGS 180 Query: 181 GICGCIMARDLLGLKTEIVGVQSTEAPSYALSFAAGKIVTTETSNTLADGMATRIPDADA 240 GICGCI+ARDLLGLKTEIVGVQSTEAPSYALSFAA +VTT +++T ADG+ATR PDADA Sbjct: 181 GICGCILARDLLGLKTEIVGVQSTEAPSYALSFAARTVVTTSSADTKADGLATRSPDADA 240 Query: 241 FALIRKGASRIVQVSDDEVGQAIRAYWTDTHNLAEGAGAAALAAALQEKNRLAGKRVGLI 300 A+I KGASRIVQVSD E+ +AIR +WTDTHNLAEGAGAA+LAAALQ+K +LAGKRVGL+ Sbjct: 241 LAIILKGASRIVQVSDAEIAEAIRIFWTDTHNLAEGAGAASLAAALQDKRKLAGKRVGLV 300 Query: 301 LSGGNIDFDLFRTWI 315 L+GGNID DLFR W+ Sbjct: 301 LTGGNIDLDLFRRWV 315