BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0257.0001.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_534188.1| hypothetical protein RPC_4346 [Rhodopseudomonas... 407 e-111 ref|YP_484717.1| hypothetical protein RPB_1096 [Rhodopseudomonas... 384 e-104 ref|YP_004107572.1| hypothetical protein Rpdx1_1213 [Rhodopseudo... 376 e-102 ref|YP_001990255.1| hypothetical protein Rpal_1240 [Rhodopseudom... 369 e-100 ref|NP_946399.1| hypothetical protein RPA1048 [Rhodopseudomonas ... 363 2e-98 >ref|YP_534188.1| hypothetical protein RPC_4346 [Rhodopseudomonas palustris BisB18] gb|ABD89869.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 365 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 228/373 (61%), Positives = 275/373 (73%), Gaps = 18/373 (4%) Query: 1 MTSIGT-TPNPYAQYGSAYARAAAT-PSLAATLSGDGTAGDLSASSTSNAATNLTLSDAA 58 MTS+ T NPYA GSAY+RA AT PSLA TL+ D SA+ + NAATNLTLSD A Sbjct: 1 MTSVYTGYSNPYA--GSAYSRAVATQPSLANTLA----TIDDSATGSGNAATNLTLSDGA 54 Query: 59 RARLAKAP-LPDFATVTSDARITLDRLYTVAGVKAPI-VDGKTTIDLSTLDRRSLFAIST 116 RA+LA A LPDFAT+T+ AR LD+LY A P+ DGK T+ L++ DRR+LFA++T Sbjct: 55 RAQLATASSLPDFATITTVARAALDKLYAAAKATGPLDADGKLTVSLTSFDRRALFAVAT 114 Query: 117 NNGGKFTPDEQAVAATELKQRFDKALEPSLATTRLTGDYSVSYKAALDYLDGASDEEKAT 176 NNGGKFTPDEQ+VAA L RF+ AL P+ TT+LTGD+ YKAALDYLD AS EEKAT Sbjct: 115 NNGGKFTPDEQSVAAAALDSRFNAALAPAAQTTKLTGDHGAIYKAALDYLDAASPEEKAT 174 Query: 177 ATWASQRAAVLKGVQTTQQDPNTAPSGISGDPVAAALA----GTAPPTKSTTRDISSIAS 232 + W +QR AV KGVQ TQ +P+ PSGIS DPVAA LA G+A PT+ D SS+A Sbjct: 175 SIWTAQRNAVAKGVQATQTEPSKPPSGISNDPVAAYLAQYPNGSAAPTQ----DFSSVAK 230 Query: 233 DVRAFLDRQKGEAAKSGKELVYDSRRKTGQLADLSSLDNRSLSAISLNQDKKFSTEEIFA 292 VRA LD Q AA G+ELV+D RKTGQLADLS++DNRSLSAI+LNQD+ FS +E FA Sbjct: 231 TVRATLDAQAKSAAALGRELVFDRGRKTGQLADLSTIDNRSLSAIALNQDQLFSKQESFA 290 Query: 293 AKQELNTRTRLAVLDALKQSQTAGDPRQFSLGILKQYSSMSAEERQAANWTQDFQDAAIK 352 AKQEL++R+R ++L ALKQSQ GDP Q SLGIL YS+MS EERQA +WT +D A++ Sbjct: 291 AKQELDSRSRASILTALKQSQKTGDPTQLSLGILNAYSAMSNEERQATHWTTSLRDTAVQ 350 Query: 353 SYKSTSTLLSILK 365 +YKST TLLS+LK Sbjct: 351 NYKSTHTLLSMLK 363 >ref|YP_484717.1| hypothetical protein RPB_1096 [Rhodopseudomonas palustris HaA2] gb|ABD05806.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 366 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/370 (59%), Positives = 269/370 (72%), Gaps = 11/370 (2%) Query: 1 MTSIGTTPNPYAQYGSAYARAAATP-SLAATLSG--DGTAGDLSASSTSNAATNLTLSDA 57 MT++ T N YAQYG+AYAR+A T SLA L+ DGT SS +N+ATNLTLS A Sbjct: 1 MTTVTTGLNSYAQYGAAYARSAVTQTSLANVLNAAEDGT------SSAANSATNLTLSAA 54 Query: 58 ARARLAK-APLPDFATVTSDARITLDRLYTVAGVKAPI-VDGKTTIDLSTLDRRSLFAIS 115 ARA+LA + DF TV SD+R LD+LYT AGV AP GK TIDLS+LDRR+++AI+ Sbjct: 55 ARAQLANASAAKDFTTVISDSRAALDKLYTAAGVSAPYDASGKPTIDLSSLDRRAVYAIA 114 Query: 116 TNNGGKFTPDEQAVAATELKQRFDKALEPSLATTRLTGDYSVSYKAALDYLDGASDEEKA 175 N+GGKFT EQ +AA F+ AL P+ T +LTGDYS YKAA DYLDGAS+EEKA Sbjct: 115 ANSGGKFTEAEQTLAAVTRVAGFNAALSPATQTAQLTGDYSTVYKAAADYLDGASNEEKA 174 Query: 176 TATWASQRAAVLKGVQTTQQDPNTAPSGISGDPVAAALAGTAPPTKSTTRDISSIASDVR 235 TATW ++RAAV KG+ TQ DP PSGIS DPVA+ LA + +TT+ SS+A R Sbjct: 175 TATWKAERAAVAKGLTATQSDPTKVPSGISNDPVASYLAQYPSGSPTTTQSFSSVAKSTR 234 Query: 236 AFLDRQKGEAAKSGKELVYDSRRKTGQLADLSSLDNRSLSAISLNQDKKFSTEEIFAAKQ 295 A LD Q AA +GKELVYD RK GQ+ADLS LDNR+LSAISLNQD+ FS EE FAAK+ Sbjct: 235 AALDEQAKSAAAAGKELVYDPGRKVGQMADLSGLDNRALSAISLNQDQLFSKEESFAAKR 294 Query: 296 ELNTRTRLAVLDALKQSQTAGDPRQFSLGILKQYSSMSAEERQAANWTQDFQDAAIKSYK 355 EL+ R R ++L ALKQSQ++G+P FSLG+L YS+MSAEER A NWT F+D A++SYK Sbjct: 295 ELDGRNRASILTALKQSQSSGNPADFSLGLLNTYSAMSAEERTATNWTTTFRDNAVQSYK 354 Query: 356 STSTLLSILK 365 +T++LLS+LK Sbjct: 355 ATTSLLSMLK 364 >ref|YP_004107572.1| hypothetical protein Rpdx1_1213 [Rhodopseudomonas palustris DX-1] gb|ADU42839.1| hypothetical protein Rpdx1_1213 [Rhodopseudomonas palustris DX-1] Length = 366 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/367 (57%), Positives = 261/367 (71%), Gaps = 5/367 (1%) Query: 1 MTSIGTTPNPYAQYGSAYAR-AAATPSLAATLSGDGTAGDLSASSTSNAATNLTLSDAAR 59 MTSI N YAQYG+AYAR A A SLA L + T+ D+ S+ SNAAT LTLS AAR Sbjct: 1 MTSITNGLNNYAQYGAAYARTAGAQTSLAGIL--NATSDDVLPSA-SNAATQLTLSAAAR 57 Query: 60 ARLAKAPLPDFATVTSDARITLDRLYTVAGVKAPI-VDGKTTIDLSTLDRRSLFAISTNN 118 A+LA D++ V SD+R +D+LY A V AP GK T+DLS LDRR+LFAI++N Sbjct: 58 AQLAGGSSKDYSAVISDSRAAIDKLYKAANVSAPYDASGKPTVDLSGLDRRALFAIASNA 117 Query: 119 GGKFTPDEQAVAATELKQRFDKALEPSLATTRLTGDYSVSYKAALDYLDGASDEEKATAT 178 GG+FT EQ +AAT +F+ AL P+ T +L GDYS YKAA YLDGAS EEKATA Sbjct: 118 GGRFTEAEQTLAATNRIAQFNAALSPATQTAKLIGDYSTVYKAAASYLDGASSEEKATAI 177 Query: 179 WASQRAAVLKGVQTTQQDPNTAPSGISGDPVAAALAGTAPPTKSTTRDISSIASDVRAFL 238 W ++RAA+ KG+ TQ DP+ P+GIS DPVAA LA + +TT+D+ S+A RA L Sbjct: 178 WQAERAAITKGLAATQSDPSKIPAGISNDPVAAYLARYPSGSATTTQDLGSVAKQARATL 237 Query: 239 DRQKGEAAKSGKELVYDSRRKTGQLADLSSLDNRSLSAISLNQDKKFSTEEIFAAKQELN 298 D Q +A +GK LVYD RKTGQ ADLS LDNR+LSAISLN+D FS EE+FAAK+EL+ Sbjct: 238 DDQAKQATAAGKLLVYDPARKTGQQADLSVLDNRALSAISLNKDDLFSQEEVFAAKRELD 297 Query: 299 TRTRLAVLDALKQSQTAGDPRQFSLGILKQYSSMSAEERQAANWTQDFQDAAIKSYKSTS 358 R R ++L ALKQSQT+G+P FSLG+L YS MSAEER A NWT F+D A++SYK+T+ Sbjct: 298 GRNRASILTALKQSQTSGNPADFSLGLLNAYSGMSAEERTATNWTPAFRDNAVQSYKATT 357 Query: 359 TLLSILK 365 +LLS+LK Sbjct: 358 SLLSMLK 364 >ref|YP_001990255.1| hypothetical protein Rpal_1240 [Rhodopseudomonas palustris TIE-1] gb|ACE99779.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 367 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/369 (58%), Positives = 263/369 (71%), Gaps = 8/369 (2%) Query: 1 MTSIGTTPNPYAQYGSAYAR-AAATPSLAATLSGDGTAGDLSASSTSNAATNLTLSDAAR 59 MTSI N YAQYG+AYAR A A SLA L+G+ + D+ S+SNAAT LTLS AAR Sbjct: 1 MTSITNGLNNYAQYGAAYARTAGAQTSLATILNGN--SDDVLPGSSSNAATQLTLSAAAR 58 Query: 60 ARLAKAPLPDFATVTSDARITLDRLYTVAGVKAPIVD-GKTTIDLSTLDRRSLFAISTNN 118 A+LA + D++ V SD+R +D+LY A V AP D GK IDLS LDRR+LFAI++N Sbjct: 59 AQLAGSS-KDYSAVISDSRAAIDKLYKAANVTAPYDDSGKPKIDLSGLDRRALFAIASNA 117 Query: 119 GGKFTPDEQAVAATELKQRFDKALEPSLATTRLTGDYSVSYKAALDYLDGASDEEKATAT 178 GG+FT EQ +AAT +F+ AL P+ T +L GDYS YKAA YLDGAS EEKAT T Sbjct: 118 GGRFTDAEQTLAATTRIAQFNDALSPATQTAKLIGDYSTVYKAAASYLDGASSEEKATPT 177 Query: 179 WASQRAAVLKGVQTTQQDPNTAPSGISGDPVAAALAGTAPPTKSTT--RDISSIASDVRA 236 W ++RAA+ KG+ TQ DP+ P+GIS DPVAA LA P STT +D S+A RA Sbjct: 178 WQAERAAITKGLAATQSDPSKIPAGISNDPVAAYLA-RYPSGSSTTATKDFGSVAKQARA 236 Query: 237 FLDRQKGEAAKSGKELVYDSRRKTGQLADLSSLDNRSLSAISLNQDKKFSTEEIFAAKQE 296 LD Q +A +GK LVYD RKTGQ ADLS LDNRSLSAISLN+D FS EE+FAAK+E Sbjct: 237 TLDDQAAQATAAGKLLVYDPARKTGQQADLSVLDNRSLSAISLNKDDLFSQEEVFAAKRE 296 Query: 297 LNTRTRLAVLDALKQSQTAGDPRQFSLGILKQYSSMSAEERQAANWTQDFQDAAIKSYKS 356 L+ R R ++L ALKQSQT+G+P FSLG+L YS MSAEER A NWTQ F+D A++SYK+ Sbjct: 297 LDGRNRASILTALKQSQTSGNPADFSLGLLNAYSGMSAEERTATNWTQAFRDNAVQSYKA 356 Query: 357 TSTLLSILK 365 T++LLS+LK Sbjct: 357 TTSLLSMLK 365 >ref|NP_946399.1| hypothetical protein RPA1048 [Rhodopseudomonas palustris CGA009] emb|CAE26491.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 367 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 212/369 (57%), Positives = 262/369 (71%), Gaps = 8/369 (2%) Query: 1 MTSIGTTPNPYAQYGSAYAR-AAATPSLAATLSGDGTAGDLSASSTSNAATNLTLSDAAR 59 MTSI N YAQYG+AYAR A A SLA L+G+ + D+ ++SNAAT LTLS AAR Sbjct: 1 MTSITNGLNNYAQYGAAYARTAGAQTSLATILNGN--SDDVLPGASSNAATQLTLSAAAR 58 Query: 60 ARLAKAPLPDFATVTSDARITLDRLYTVAGVKAPIVD-GKTTIDLSTLDRRSLFAISTNN 118 A+LA + D++ V SD+R +D+LY A V AP D GK IDLS LDRR+LFAI++N Sbjct: 59 AQLAGSS-KDYSAVISDSRAAIDKLYKAANVTAPYDDSGKPKIDLSGLDRRALFAIASNA 117 Query: 119 GGKFTPDEQAVAATELKQRFDKALEPSLATTRLTGDYSVSYKAALDYLDGASDEEKATAT 178 GG+FT EQ +AAT +F+ AL P+ T +L GDYS YKAA YLDGAS EEKAT T Sbjct: 118 GGRFTDAEQTLAATTRIAQFNDALSPATQTAKLIGDYSTVYKAAASYLDGASSEEKATPT 177 Query: 179 WASQRAAVLKGVQTTQQDPNTAPSGISGDPVAAALAGTAPPTKSTT--RDISSIASDVRA 236 W ++RAA+ KG+ TQ DP+ P+GIS DPVAA LA P STT +D S+A RA Sbjct: 178 WQAERAAITKGLAATQSDPSKIPAGISNDPVAAYLA-RYPSGSSTTATKDFGSVAKQARA 236 Query: 237 FLDRQKGEAAKSGKELVYDSRRKTGQLADLSSLDNRSLSAISLNQDKKFSTEEIFAAKQE 296 LD Q +A +GK LVYD RKTGQ ADLS LDNR+LSAISLN+D FS EE+FAAK+E Sbjct: 237 TLDDQAAQATAAGKLLVYDPARKTGQQADLSVLDNRALSAISLNKDDLFSQEEVFAAKRE 296 Query: 297 LNTRTRLAVLDALKQSQTAGDPRQFSLGILKQYSSMSAEERQAANWTQDFQDAAIKSYKS 356 L+ R R ++L ALKQSQT+G+P FSLG+L YS MSAEER A NWT F+D A++SYK+ Sbjct: 297 LDGRNRASILTALKQSQTSGNPADFSLGLLNAYSGMSAEERTATNWTPAFRDNAVQSYKA 356 Query: 357 TSTLLSILK 365 T++LLS+LK Sbjct: 357 TTSLLSMLK 365