BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0018.p         (579 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_530849.1| carbamoyl phosphate synthase small subunit [Rho...   411   e-112
ref|NP_774011.1| carbamoyl phosphate synthase small subunit [Bra...   410   e-112
ref|YP_779915.1| carbamoyl phosphate synthase small subunit [Rho...   402   e-109
ref|NP_946627.1| carbamoyl phosphate synthase small subunit [Rho...   399   e-109
ref|YP_001242587.1| carbamoyl phosphate synthase small subunit [...   399   e-109

>ref|YP_530849.1| carbamoyl phosphate synthase small subunit [Rhodopseudomonas
           palustris BisB18]
 gb|ABD86530.1| carbamoyl-phosphate synthase small subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 396

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/209 (93%), Positives = 203/209 (97%)

Query: 1   VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQIITFTFPHIGNVGTNE 60
           VLADGTV EGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQ+ITFTFPHIGNVGTN+
Sbjct: 20  VLADGTVFEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQLITFTFPHIGNVGTND 79

Query: 61  EDIETVNMAATPGARGVILRSAITDPSNYRASRHLDQWLKARGIIGLSGIDTRALTALIR 120
           +DIETVNMAATPGARGVILR+AITDPSNYR+SRHLD WLKARGIIGLSGIDTRALTALIR
Sbjct: 80  DDIETVNMAATPGARGVILRAAITDPSNYRSSRHLDAWLKARGIIGLSGIDTRALTALIR 139

Query: 121 SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWVWGKGF 180
           SKGMPNAVIAHARNGEF+LH LKEEAREWPGLEGMDLVPMVTSGQRFTWDETPW+W +GF
Sbjct: 140 SKGMPNAVIAHARNGEFELHALKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWIWNEGF 199

Query: 181 GQQTAPEFNVVAIDYGIKRNILRLLAXRG 209
           GQQTAPEFNVVAIDYGIKRNILRLLA  G
Sbjct: 200 GQQTAPEFNVVAIDYGIKRNILRLLAGEG 228


>ref|NP_774011.1| carbamoyl phosphate synthase small subunit [Bradyrhizobium
           japonicum USDA 110]
 sp|Q89DR8.1|CARA_BRAJA RecName: Full=Carbamoyl-phosphate synthase small chain; AltName:
           Full=Carbamoyl-phosphate synthetase glutamine chain
 dbj|BAC52636.1| carbamoylphosphate synthase small chain [Bradyrhizobium japonicum
           USDA 110]
          Length = 396

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/209 (94%), Positives = 202/209 (96%)

Query: 1   VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQIITFTFPHIGNVGTNE 60
           VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQ+ITFTFPHIGNVGTNE
Sbjct: 20  VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQLITFTFPHIGNVGTNE 79

Query: 61  EDIETVNMAATPGARGVILRSAITDPSNYRASRHLDQWLKARGIIGLSGIDTRALTALIR 120
           EDIETVNMAATPGARGVILR+AITDPSNYRA++HLD WLKARGIIGLSGIDTRALTALIR
Sbjct: 80  EDIETVNMAATPGARGVILRTAITDPSNYRATKHLDAWLKARGIIGLSGIDTRALTALIR 139

Query: 121 SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWVWGKGF 180
           SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPW+W KGF
Sbjct: 140 SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWLWDKGF 199

Query: 181 GQQTAPEFNVVAIDYGIKRNILRLLAXRG 209
           GQQ   EFNVVAIDYGIKRNILRLLA  G
Sbjct: 200 GQQDKTEFNVVAIDYGIKRNILRLLAGVG 228


>ref|YP_779915.1| carbamoyl phosphate synthase small subunit [Rhodopseudomonas
           palustris BisA53]
 gb|ABJ04935.1| carbamoyl-phosphate synthase small subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 396

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/209 (90%), Positives = 200/209 (95%)

Query: 1   VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQIITFTFPHIGNVGTNE 60
           VLADGTV EGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQ+ITFTFPHIGN+G N+
Sbjct: 20  VLADGTVFEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQLITFTFPHIGNIGAND 79

Query: 61  EDIETVNMAATPGARGVILRSAITDPSNYRASRHLDQWLKARGIIGLSGIDTRALTALIR 120
           EDIETVNMAATPGARGVILR+AITDPSNYR+SRHLD WLKARGIIGLSGIDTRALTALIR
Sbjct: 80  EDIETVNMAATPGARGVILRAAITDPSNYRSSRHLDAWLKARGIIGLSGIDTRALTALIR 139

Query: 121 SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWVWGKGF 180
           SKGMPNAV+AH+  GEFDLH LKEEAREWPGLEGMDLVPMVTSGQRFTWDETPW WG+GF
Sbjct: 140 SKGMPNAVLAHSARGEFDLHALKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWAWGEGF 199

Query: 181 GQQTAPEFNVVAIDYGIKRNILRLLAXRG 209
           G+QTAPEFNVVAIDYG+KRNILRLLA  G
Sbjct: 200 GRQTAPEFNVVAIDYGVKRNILRLLAGEG 228


>ref|NP_946627.1| carbamoyl phosphate synthase small subunit [Rhodopseudomonas
           palustris CGA009]
 ref|YP_001990485.1| carbamoyl phosphate synthase small subunit [Rhodopseudomonas
           palustris TIE-1]
 emb|CAE26719.1| carbamoyl-phosphate synthase small subunit [Rhodopseudomonas
           palustris CGA009]
 gb|ACF00010.1| carbamoyl-phosphate synthase, small subunit [Rhodopseudomonas
           palustris TIE-1]
          Length = 397

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/209 (91%), Positives = 197/209 (94%)

Query: 1   VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQIITFTFPHIGNVGTNE 60
           VLADGTV EGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQ+ITFTFPHIGNVGTN+
Sbjct: 20  VLADGTVFEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQLITFTFPHIGNVGTND 79

Query: 61  EDIETVNMAATPGARGVILRSAITDPSNYRASRHLDQWLKARGIIGLSGIDTRALTALIR 120
           EDIETVNMAATPGARGVILRSAITDPSNYR+SRHLD WLKARGIIGLSGIDTRALTALIR
Sbjct: 80  EDIETVNMAATPGARGVILRSAITDPSNYRSSRHLDAWLKARGIIGLSGIDTRALTALIR 139

Query: 121 SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWVWGKGF 180
           SKGMPNAVIAH+  GEFDLH LKEEAREWPGLEGMDLVPMVTS QRFTWDETPW WG+ F
Sbjct: 140 SKGMPNAVIAHSPTGEFDLHALKEEAREWPGLEGMDLVPMVTSAQRFTWDETPWAWGESF 199

Query: 181 GQQTAPEFNVVAIDYGIKRNILRLLAXRG 209
           G+Q  PEFNVVAIDYGIKRNILRLLA  G
Sbjct: 200 GRQDKPEFNVVAIDYGIKRNILRLLAGEG 228


>ref|YP_001242587.1| carbamoyl phosphate synthase small subunit [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ38681.1| carbamoyl-phosphate synthase small subunit [Bradyrhizobium sp.
           BTAi1]
          Length = 398

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/209 (90%), Positives = 202/209 (96%)

Query: 1   VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQIITFTFPHIGNVGTNE 60
           VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQ+ITFTFPHIGNVGTN+
Sbjct: 20  VLADGTVLEGFGLGAEGHAVGEVCFNTAMTGYEEILTDPSYAGQLITFTFPHIGNVGTND 79

Query: 61  EDIETVNMAATPGARGVILRSAITDPSNYRASRHLDQWLKARGIIGLSGIDTRALTALIR 120
           EDIETVNMAATPGARGVILR+AI+DPSNYRA+RHLDQWL+ARGIIGLSGIDTRALTALIR
Sbjct: 80  EDIETVNMAATPGARGVILRTAISDPSNYRATRHLDQWLRARGIIGLSGIDTRALTALIR 139

Query: 121 SKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVTSGQRFTWDETPWVWGKGF 180
           SKGMPNAVIA++++G+FDL  LK+EAREWPGLEGMDLVPMVTS QRFTWDETPWVW +GF
Sbjct: 140 SKGMPNAVIAYSKDGQFDLDALKKEAREWPGLEGMDLVPMVTSAQRFTWDETPWVWNEGF 199

Query: 181 GQQTAPEFNVVAIDYGIKRNILRLLAXRG 209
           GQQT PEFNVVAIDYGIKRNILRLLA  G
Sbjct: 200 GQQTKPEFNVVAIDYGIKRNILRLLAGVG 228