BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0011.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772413.1| transcriptional regulator [Bradyrhizobium japon...   174   5e-42
ref|YP_533084.1| ArsR family transcriptional regulator [Rhodopse...   165   2e-39
ref|YP_001239705.1| ArsR family transcriptional regulator [Brady...   163   9e-39
ref|YP_001990226.1| ArsR family transcriptional regulator [Rhodo...   160   8e-38
ref|NP_946370.1| NolR/HlyU transcriptional regulator [Rhodopseud...   159   1e-37

>ref|NP_772413.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51038.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 106

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 97/106 (91%)

Query: 1   MNINIDIMQSAADRASDLLKALSNRHRLLIICQLVDGERSVGELAEFLDLRDSTVSQHLA 60
           M I+ + M+ AAD+ASDLLKALSNRHRLLIICQL++GERSVGELAEFL+LRDSTVSQHLA
Sbjct: 1   MKIDSETMERAADQASDLLKALSNRHRLLIICQLIEGERSVGELAEFLNLRDSTVSQHLA 60

Query: 61  LLRKDGLVSARRDGQSIFYSIASDPARKVLEALYEVYCAPKDVKRK 106
           LLRKDGLVS+RRD Q+IFYSIAS+PAR++L+ LY+V+CAPK  + K
Sbjct: 61  LLRKDGLVSSRRDAQTIFYSIASEPAREILKTLYQVFCAPKSARSK 106


>ref|YP_533084.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD88765.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris
           BisB18]
          Length = 123

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 89/100 (89%)

Query: 1   MNINIDIMQSAADRASDLLKALSNRHRLLIICQLVDGERSVGELAEFLDLRDSTVSQHLA 60
           M +NID M+ AAD+AS+LLKALSNRHRLLIICQLVDGERSVG+LA+ L LRDSTVSQHLA
Sbjct: 7   MKMNIDAMEQAADQASELLKALSNRHRLLIICQLVDGERSVGDLAQLLGLRDSTVSQHLA 66

Query: 61  LLRKDGLVSARRDGQSIFYSIASDPARKVLEALYEVYCAP 100
           LLRKDGLV+ARRD Q+I+YSIAS PAR++L  LY VYC P
Sbjct: 67  LLRKDGLVAARRDAQTIYYSIASAPARELLTTLYRVYCPP 106


>ref|YP_001239705.1| ArsR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ35799.1| transcriptional regulator, ArsR family [Bradyrhizobium sp. BTAi1]
          Length = 104

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 92/102 (90%), Gaps = 3/102 (2%)

Query: 8   MQSAADRASDLLKALSNRHRLLIICQLVDGERSVGELAEFLDLRDSTVSQHLALLRKDGL 67
           M++AAD+ASDLLKALSNRHRLLIICQLVD ERSVGELA FL LRDSTVSQHLALLRKDGL
Sbjct: 1   MEAAADQASDLLKALSNRHRLLIICQLVDTERSVGELAAFLGLRDSTVSQHLALLRKDGL 60

Query: 68  VSARRDGQSIFYSIASDPARKVLEALYEVYCA---PKDVKRK 106
           V+ARRDGQ+I+YSI S+PAR+VL+ LY+VYCA   PK  +R+
Sbjct: 61  VTARRDGQTIYYSITSEPAREVLKTLYQVYCAALPPKPAQRQ 102


>ref|YP_001990226.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gb|ACE99750.1| transcriptional regulator, ArsR family [Rhodopseudomonas
          palustris TIE-1]
          Length = 113

 Score =  160 bits (404), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 80/98 (81%), Positives = 87/98 (88%)

Query: 1  MNINIDIMQSAADRASDLLKALSNRHRLLIICQLVDGERSVGELAEFLDLRDSTVSQHLA 60
          M I  D M  AAD+AS+LLKALSNRHRLLIICQLV+GERSVGELAE LDLRDSTVSQHLA
Sbjct: 1  MKITDDPMVVAADQASELLKALSNRHRLLIICQLVNGERSVGELAEALDLRDSTVSQHLA 60

Query: 61 LLRKDGLVSARRDGQSIFYSIASDPARKVLEALYEVYC 98
          LLR+DGLVSARRD QSIFYSIAS+PAR+VL  LY V+C
Sbjct: 61 LLRRDGLVSARRDAQSIFYSIASEPAREVLTTLYRVFC 98


>ref|NP_946370.1| NolR/HlyU transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 emb|CAE26462.1| possible NolR/HlyU transcriptional regulator, ArsR family
           [Rhodopseudomonas palustris CGA009]
          Length = 113

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 90/105 (85%)

Query: 1   MNINIDIMQSAADRASDLLKALSNRHRLLIICQLVDGERSVGELAEFLDLRDSTVSQHLA 60
           M I  D M  AAD+AS+LLKALSNRHRLLIICQLVDGERSVGELA+ LDLRDSTVSQHLA
Sbjct: 1   MKITDDPMVVAADQASELLKALSNRHRLLIICQLVDGERSVGELADALDLRDSTVSQHLA 60

Query: 61  LLRKDGLVSARRDGQSIFYSIASDPARKVLEALYEVYCAPKDVKR 105
           LLR+DGLVSARRD QSIFYSIAS+PAR+VL  LY V+C  + + +
Sbjct: 61  LLRRDGLVSARRDAQSIFYSIASEPAREVLTTLYRVFCPGQAIGK 105