BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0010.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772412.1| hypothetical protein bll5772 [Bradyrhizobium ja... 486 e-135 ref|YP_001239704.1| RND family efflux pump membrane fusion prote... 469 e-130 ref|YP_533083.1| secretion protein HlyD [Rhodopseudomonas palust... 468 e-130 ref|YP_001205233.1| RND family efflux pump membrane fusion prote... 464 e-129 ref|YP_001206548.1| RND family efflux pump membrane fusion prote... 458 e-127 >ref|NP_772412.1| hypothetical protein bll5772 [Bradyrhizobium japonicum USDA 110] dbj|BAC51037.1| bll5772 [Bradyrhizobium japonicum USDA 110] Length = 336 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 254/310 (81%), Positives = 279/310 (90%) Query: 74 ARAEMLTVAQHQVADEKAVFATVESISVAPARGRISGTVAQLNVREGDRVAAGQVIATVG 133 A AE TV QH VADEKAVFATVES+SV PARGRI G V QLNVREGD V AGQ IA +G Sbjct: 27 AAAEAFTVTQHPVADEKAVFATVESVSVVPARGRIGGIVVQLNVREGDPVTAGQAIAIIG 86 Query: 134 DEKLVLQMKSLDAQIEALQAQANQAQIDFTRIEGLVERGTLPRVKLDEARTALNVADNGL 193 DEKL LQMK+LDAQIEALQAQANQAQIDF+RIEGLVERGTLPRVKLDEARTALNVA+NGL Sbjct: 87 DEKLALQMKALDAQIEALQAQANQAQIDFSRIEGLVERGTLPRVKLDEARTALNVAENGL 146 Query: 194 RARTAERAVISQQLSEGRVLAPSDGRVLKKLVTVGSVVLPGDAIVTVAQQHFKLRLRVPE 253 RA+TAERAVI+QQLSEG+VLAPS GRVL+KLVTVGSVV+ GDAIVTVAQQHFKLRLRVPE Sbjct: 147 RAKTAERAVIAQQLSEGQVLAPSGGRVLRKLVTVGSVVMSGDAIVTVAQQHFKLRLRVPE 206 Query: 254 RHARFLQPGDKIRVDAAELGEEAPRTGVIDLVYPQIEEGRVIADATVEGLGEYFVGDRLR 313 RHAR L+ GD+IRVD AELGE+A + GVIDLVYPQIEEGRVIADA+V+GLGEYFVGDRLR Sbjct: 207 RHARLLKAGDRIRVDGAELGEDASKWGVIDLVYPQIEEGRVIADASVQGLGEYFVGDRLR 266 Query: 314 VWISAGTRPAFVIPASYVRTRFGIDYIQLRQADRTVEIPVQRGRNVPTPALPDGLEILSG 373 VWIS G R AFVIPA YV TRFGIDY++L++A V++PVQRGR +PTPALPDGLEILSG Sbjct: 267 VWISGGLRQAFVIPAGYVTTRFGIDYVRLQKAGGVVDVPVQRGRELPTPALPDGLEILSG 326 Query: 374 LRDGDQLVQP 383 +R GDQLV+P Sbjct: 327 IRAGDQLVRP 336 >ref|YP_001239704.1| RND family efflux pump membrane fusion protein [Bradyrhizobium sp. BTAi1] gb|ABQ35798.1| putative membrane fusion protein, component of an efflux pump (RND family, MFP subunit) [Bradyrhizobium sp. BTAi1] Length = 333 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 248/327 (75%), Positives = 275/327 (84%) Query: 57 LSILPAALAAFVLSLAPARAEMLTVAQHQVADEKAVFATVESISVAPARGRISGTVAQLN 116 LS++ A AP AE LTV QVADEKAVFATVESISV PARGRI GT+AQL+ Sbjct: 7 LSLIAAMTWQMGWQAAPVHAETLTVTPRQVADEKAVFATVESISVVPARGRIGGTIAQLS 66 Query: 117 VREGDRVAAGQVIATVGDEKLVLQMKSLDAQIEALQAQANQAQIDFTRIEGLVERGTLPR 176 VREGD V GQ IA +GDEKL LQ+KSLDAQIEALQAQANQAQIDFTR EGLVERGTLPR Sbjct: 67 VREGDPVKRGQPIALIGDEKLALQLKSLDAQIEALQAQANQAQIDFTRTEGLVERGTLPR 126 Query: 177 VKLDEARTALNVADNGLRARTAERAVISQQLSEGRVLAPSDGRVLKKLVTVGSVVLPGDA 236 VKLDE RTALNVA+NGLRA+TAERAV++QQ+SEG+VLAP DGRVLKKLVTVGSVVLPGD Sbjct: 127 VKLDETRTALNVAENGLRAKTAERAVVNQQMSEGQVLAPDDGRVLKKLVTVGSVVLPGDP 186 Query: 237 IVTVAQQHFKLRLRVPERHARFLQPGDKIRVDAAELGEEAPRTGVIDLVYPQIEEGRVIA 296 +VTVAQQ+FKLRLRVPERHA FL+ GDKIR+D AE GE + GVIDLVYPQIEEGRV+A Sbjct: 187 VVTVAQQNFKLRLRVPERHALFLKAGDKIRLDGAEFGESGDKWGVIDLVYPQIEEGRVVA 246 Query: 297 DATVEGLGEYFVGDRLRVWISAGTRPAFVIPASYVRTRFGIDYIQLRQADRTVEIPVQRG 356 DA V GLG+YFVGDRLRVWIS G R A+VIPA YV TRFGIDY+QL+Q + +PVQRG Sbjct: 247 DAIVPGLGQYFVGDRLRVWISGGQRDAYVIPARYVTTRFGIDYVQLQQGAQKASVPVQRG 306 Query: 357 RNVPTPALPDGLEILSGLRDGDQLVQP 383 R +P+ +PDGLEILSGLR GDQLVQP Sbjct: 307 RALPSADVPDGLEILSGLRAGDQLVQP 333 >ref|YP_533083.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] gb|ABD88764.1| Secretion protein HlyD [Rhodopseudomonas palustris BisB18] Length = 328 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/320 (72%), Positives = 270/320 (84%) Query: 64 LAAFVLSLAPARAEMLTVAQHQVADEKAVFATVESISVAPARGRISGTVAQLNVREGDRV 123 LAA ++ A RAE LTVA VAD+KAVFATVES+SV PARGRI GTV QL V+EGD V Sbjct: 9 LAALLVPSAMLRAEPLTVAARTVADDKAVFATVESVSVVPARGRIGGTVVQLKVKEGDAV 68 Query: 124 AAGQVIATVGDEKLVLQMKSLDAQIEALQAQANQAQIDFTRIEGLVERGTLPRVKLDEAR 183 GQ IA +GDEKL LQM +LDAQI ALQAQ++QAQIDF R+EGLVERGTLPR+KLDEAR Sbjct: 69 TRGQAIAAIGDEKLALQMNALDAQIAALQAQSSQAQIDFNRVEGLVERGTLPRIKLDEAR 128 Query: 184 TALNVADNGLRARTAERAVISQQLSEGRVLAPSDGRVLKKLVTVGSVVLPGDAIVTVAQQ 243 TALNVA+NGLRARTAERAV+ QQ +EG+VLAP+DGRVLKKLV VGSV+LPGDA+ T+AQQ Sbjct: 129 TALNVAENGLRARTAERAVVQQQFNEGQVLAPADGRVLKKLVAVGSVMLPGDAVATIAQQ 188 Query: 244 HFKLRLRVPERHARFLQPGDKIRVDAAELGEEAPRTGVIDLVYPQIEEGRVIADATVEGL 303 FKLRLR+PE HAR L+ GDK+RVD E+G APR G IDL+YPQIE+GRV+ADA V+GL Sbjct: 189 DFKLRLRIPEHHARSLRLGDKVRVDGGEIGAAAPRFGTIDLIYPQIEDGRVVADAKVDGL 248 Query: 304 GEYFVGDRLRVWISAGTRPAFVIPASYVRTRFGIDYIQLRQADRTVEIPVQRGRNVPTPA 363 GEYFVGDRLRVWI+ G R AFVIP+SYV T+FGIDY+++ Q T+ PVQRGR++P+P Sbjct: 249 GEYFVGDRLRVWIAGGERTAFVIPSSYVTTKFGIDYVKIEQPGGTIVTPVQRGRDLPSPE 308 Query: 364 LPDGLEILSGLRDGDQLVQP 383 LPDGLEILSG+ GD+LVQP Sbjct: 309 LPDGLEILSGIGRGDRLVQP 328 >ref|YP_001205233.1| RND family efflux pump membrane fusion protein [Bradyrhizobium sp. ORS 278] emb|CAL76998.1| putative membrane fusion protein, component of an efflux pump (RND family, MFP subunit) [Bradyrhizobium sp. ORS 278] Length = 336 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 248/331 (74%), Positives = 281/331 (84%), Gaps = 3/331 (0%) Query: 56 RLSILP--AALAAFVLS-LAPARAEMLTVAQHQVADEKAVFATVESISVAPARGRISGTV 112 RLS+L AA+A + S APA AE LTV+ Q+ADEKAVFATVESISV PARGRI GT+ Sbjct: 6 RLSLLTLIAAMACQLSSQTAPALAEALTVSPRQIADEKAVFATVESISVVPARGRIGGTI 65 Query: 113 AQLNVREGDRVAAGQVIATVGDEKLVLQMKSLDAQIEALQAQANQAQIDFTRIEGLVERG 172 QL+VREGD V GQ IA +GDEKL LQ+KSLDAQIEALQAQANQAQ+DFTR EGLVERG Sbjct: 66 VQLSVREGDPVKRGQPIALIGDEKLALQLKSLDAQIEALQAQANQAQLDFTRTEGLVERG 125 Query: 173 TLPRVKLDEARTALNVADNGLRARTAERAVISQQLSEGRVLAPSDGRVLKKLVTVGSVVL 232 TLPRVKLDE RTALNVADN LRA+TAERAV++QQ+SEG+VLAP DGR+LKKL+ VGSVVL Sbjct: 126 TLPRVKLDETRTALNVADNSLRAKTAERAVVNQQMSEGQVLAPDDGRILKKLIAVGSVVL 185 Query: 233 PGDAIVTVAQQHFKLRLRVPERHARFLQPGDKIRVDAAELGEEAPRTGVIDLVYPQIEEG 292 PGD +VTVAQQ+FKLRLRVPERHA FL+ GDK+RVD E G+ + + GVIDLVYPQIEEG Sbjct: 186 PGDPVVTVAQQNFKLRLRVPERHALFLKAGDKVRVDGTEFGDSSDKWGVIDLVYPQIEEG 245 Query: 293 RVIADATVEGLGEYFVGDRLRVWISAGTRPAFVIPASYVRTRFGIDYIQLRQADRTVEIP 352 RV+ADA V GLG+YFVGDRLRVWIS G R AFVIP+ YV TRFGIDY+QL+Q + V +P Sbjct: 246 RVVADAIVSGLGQYFVGDRLRVWISGGQRDAFVIPSRYVTTRFGIDYVQLQQGAQKVSVP 305 Query: 353 VQRGRNVPTPALPDGLEILSGLRDGDQLVQP 383 VQRGR +P+ LPDGLEILSGLR GDQLVQP Sbjct: 306 VQRGRALPSADLPDGLEILSGLRAGDQLVQP 336 >ref|YP_001206548.1| RND family efflux pump membrane fusion protein [Bradyrhizobium sp. ORS 278] emb|CAL78328.1| putative membrane fusion protein, component of an efflux pump (RND family, MFP subunit) [Bradyrhizobium sp. ORS 278] Length = 331 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 241/310 (77%), Positives = 269/310 (86%) Query: 74 ARAEMLTVAQHQVADEKAVFATVESISVAPARGRISGTVAQLNVREGDRVAAGQVIATVG 133 ++AE LTV QVADEKAVFATVES+SV PARGRI GT+AQL+VREGD V GQ IA +G Sbjct: 22 SQAETLTVTPRQVADEKAVFATVESVSVVPARGRIGGTIAQLSVREGDPVKRGQPIALIG 81 Query: 134 DEKLVLQMKSLDAQIEALQAQANQAQIDFTRIEGLVERGTLPRVKLDEARTALNVADNGL 193 DEKL LQ+KSLDAQIEALQAQANQAQIDFTR EGLVERGTLPRVKLDE RTALNVA+N L Sbjct: 82 DEKLALQLKSLDAQIEALQAQANQAQIDFTRTEGLVERGTLPRVKLDETRTALNVAENSL 141 Query: 194 RARTAERAVISQQLSEGRVLAPSDGRVLKKLVTVGSVVLPGDAIVTVAQQHFKLRLRVPE 253 RA+TAERAV++QQ+SEG+VLAP DGRVLKKLVTVGSVVLPGD +VTVAQQ+FKLRLRVPE Sbjct: 142 RAKTAERAVVNQQMSEGQVLAPDDGRVLKKLVTVGSVVLPGDPVVTVAQQNFKLRLRVPE 201 Query: 254 RHARFLQPGDKIRVDAAELGEEAPRTGVIDLVYPQIEEGRVIADATVEGLGEYFVGDRLR 313 RHA FL+ GDKIR+D AE GE + GVIDLVYPQIEEGRV+ADA V GLG+YFVGDRLR Sbjct: 202 RHALFLKAGDKIRLDGAEFGESGDKWGVIDLVYPQIEEGRVVADAIVPGLGQYFVGDRLR 261 Query: 314 VWISAGTRPAFVIPASYVRTRFGIDYIQLRQADRTVEIPVQRGRNVPTPALPDGLEILSG 373 VWIS G R A+VIP+ YV TRFGID +QL+Q + V +PVQRGR +P+ LPDGLEILSG Sbjct: 262 VWISGGQREAYVIPSRYVITRFGIDTVQLQQGAQQVSVPVQRGRALPSADLPDGLEILSG 321 Query: 374 LRDGDQLVQP 383 LR GDQLVQP Sbjct: 322 LRAGDQLVQP 331