BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0006.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533688.1| carbamoyl phosphate synthase large subunit [Rho... 416 e-114 ref|YP_001242595.1| carbamoyl phosphate synthase large subunit [... 416 e-114 ref|YP_578103.1| carbamoyl phosphate synthase large subunit [Nit... 414 e-114 ref|ZP_01046938.1| carbamoyl-phosphate synthase large subunit [N... 410 e-112 ref|YP_319054.1| carbamoyl phosphate synthase large subunit [Nit... 409 e-112 >ref|YP_533688.1| carbamoyl phosphate synthase large subunit [Rhodopseudomonas palustris BisB18] gb|ABD89369.1| carbamoyl-phosphate synthase large subunit [Rhodopseudomonas palustris BisB18] Length = 1154 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/228 (89%), Positives = 217/228 (95%) Query: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPEL 60 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQA KTLK+EGYRIVLVNSNPATIMTDPEL Sbjct: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQAVKTLKDEGYRIVLVNSNPATIMTDPEL 60 Query: 61 ADATYIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM 120 ADATYIEPITPEIVAKIIEKERHV PGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM Sbjct: 61 ADATYIEPITPEIVAKIIEKERHVIPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM 120 Query: 121 IGATADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELE 180 IGATADAIDKAEDRQLFR+AM KIGL+TP+SRLANA+ALKK+ R+KYL D+AKLSG EL Sbjct: 121 IGATADAIDKAEDRQLFREAMTKIGLETPKSRLANATALKKAYREKYLEDRAKLSGEELV 180 Query: 181 AFKRQWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGGTG 228 AF+RQW GE++RRKRYQ+QAL ALMALS+IGLPAIIRPSFT+GGTG Sbjct: 181 AFERQWVLGESDRRKRYQEQALGSALMALSEIGLPAIIRPSFTMGGTG 228 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 52/222 (23%) Query: 5 TDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPELADAT 64 +D ++I+G GP IGQ EFDY AC L + GY +++N NP T+ TD + AD Sbjct: 613 SDKKKVIILGGGPNRIGQGIEFDYCCCHACFALHDAGYESIMINCNPETVSTDYDTADRL 672 Query: 65 YIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEMIGAT 124 Y EP+T E V +II+ E+ ++ GGQT L A + LE DV ++G + Sbjct: 673 YFEPLTAEDVLEIIDTEKRNGT-LHGVIVQFGGQTPLKLARA------LEAADVPILGTS 725 Query: 125 ADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELEAFKR 184 DAID AEDR F+ ++K+ L+ P++ +A Y +QA+L EL Sbjct: 726 PDAIDLAEDRDRFKRVLDKLKLKQPKNGIA------------YSVEQARLVAAEL----- 768 Query: 185 QWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGG 226 GLP ++RPS+ LGG Sbjct: 769 ----------------------------GLPLVVRPSYVLGG 782 >ref|YP_001242595.1| carbamoyl phosphate synthase large subunit [Bradyrhizobium sp. BTAi1] gb|ABQ38689.1| carbamoyl-phosphate synthase large subunit [Bradyrhizobium sp. BTAi1] Length = 1154 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/228 (88%), Positives = 213/228 (93%) Query: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPEL 60 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQA K LKEEGYR+VLVNSNPATIMTDPEL Sbjct: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQAVKALKEEGYRVVLVNSNPATIMTDPEL 60 Query: 61 ADATYIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM 120 ADATYIEPITPEIVA+IIEKERHV PGGFALLPTMGGQTALNCALSLR+QGTLEKFDVEM Sbjct: 61 ADATYIEPITPEIVARIIEKERHVIPGGFALLPTMGGQTALNCALSLRRQGTLEKFDVEM 120 Query: 121 IGATADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELE 180 IGATADAIDKAEDRQLFR+AMEKIGLQTP+SRLANASALKK RDKYLA++ KLSGP + Sbjct: 121 IGATADAIDKAEDRQLFRNAMEKIGLQTPKSRLANASALKKQFRDKYLAEREKLSGPARD 180 Query: 181 AFKRQWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGGTG 228 RQW GENERRKRYQ+ AL EA+MALS+IGLPAIIRPSFT+GGTG Sbjct: 181 ELDRQWSLGENERRKRYQEYALGEAMMALSEIGLPAIIRPSFTMGGTG 228 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 106/222 (47%), Gaps = 52/222 (23%) Query: 5 TDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPELADAT 64 +D ++I+G GP IGQ EFDY AC L + GY ++VN NP T+ TD + AD Sbjct: 613 SDKKKVVILGGGPNRIGQGIEFDYCCCHACFALADAGYETIMVNCNPETVSTDYDTADRL 672 Query: 65 YIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEMIGAT 124 Y EP+T E V +II ER ++ GGQT L A + LE +V ++G + Sbjct: 673 YFEPLTAEDVLEIIATERKNGT-LHGVIVQFGGQTPLKLARA------LEAAEVPILGTS 725 Query: 125 ADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELEAFKR 184 +AID AEDR F+ ++K+ L+ P++ +A Y +QA+L Sbjct: 726 PEAIDLAEDRDRFKRILDKLHLKQPKNGIA------------YSVEQARLVA-------- 765 Query: 185 QWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGG 226 +D+GLP ++RPS+ LGG Sbjct: 766 -------------------------ADLGLPLVVRPSYVLGG 782 >ref|YP_578103.1| carbamoyl phosphate synthase large subunit [Nitrobacter hamburgensis X14] gb|ABE63643.1| carbamoyl-phosphate synthase large subunit [Nitrobacter hamburgensis X14] Length = 1154 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/228 (88%), Positives = 215/228 (94%) Query: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPEL 60 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQA K LKEEGYR+VLVNSNPATIMTDPEL Sbjct: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQAVKALKEEGYRVVLVNSNPATIMTDPEL 60 Query: 61 ADATYIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM 120 ADATYIEPITPEIVA+IIEKERHV PGGFALLPTMGGQTALNCALSLR+ GTLE+FDVEM Sbjct: 61 ADATYIEPITPEIVARIIEKERHVIPGGFALLPTMGGQTALNCALSLRRLGTLEEFDVEM 120 Query: 121 IGATADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELE 180 IGATADAIDKAEDRQLFR+AM KIGL+TP+SRLANASALKKSDRD +LA++ KLSG L Sbjct: 121 IGATADAIDKAEDRQLFREAMTKIGLETPKSRLANASALKKSDRDSHLAEKDKLSGDALA 180 Query: 181 AFKRQWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGGTG 228 F+RQW GENERRKRYQQQA+AEALMALS+IGLPAIIRPSFT+GGTG Sbjct: 181 EFERQWTLGENERRKRYQQQAMAEALMALSEIGLPAIIRPSFTMGGTG 228 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 52/222 (23%) Query: 5 TDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPELADAT 64 +D + ++I+G GP IGQ EFDY AC L + G+ ++VN NP T+ TD + AD Sbjct: 613 SDRTKVVILGGGPNRIGQGIEFDYCCCHACFALSDAGFETIMVNCNPETVSTDYDTADRL 672 Query: 65 YIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEMIGAT 124 Y EP+T E V +II+ ER ++ GGQT L A + LE DV ++G + Sbjct: 673 YFEPLTAEDVLEIIDTERQNGT-LHGVIVQFGGQTPLKLARA------LEAADVPILGTS 725 Query: 125 ADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELEAFKR 184 +AID AEDR F+ ++++ L+ P++ +A Y +QA+L Sbjct: 726 PEAIDLAEDRDRFKRILDRLKLKQPKNGIA------------YSVEQARLVA-------- 765 Query: 185 QWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGG 226 +D+GLP ++RPS+ LGG Sbjct: 766 -------------------------ADLGLPLVVRPSYVLGG 782 >ref|ZP_01046938.1| carbamoyl-phosphate synthase large subunit [Nitrobacter sp. Nb-311A] gb|EAQ35040.1| carbamoyl-phosphate synthase large subunit [Nitrobacter sp. Nb-311A] Length = 1156 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/228 (86%), Positives = 214/228 (93%) Query: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPEL 60 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQA K LKEEGYR+VLVNSNPATIMTDPEL Sbjct: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQAVKALKEEGYRVVLVNSNPATIMTDPEL 60 Query: 61 ADATYIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM 120 ADATYIEPITPEIV KIIEKER+V PGGFALLPTMGGQTALNCALSLR+QGTL++FDVEM Sbjct: 61 ADATYIEPITPEIVGKIIEKERYVIPGGFALLPTMGGQTALNCALSLRRQGTLDEFDVEM 120 Query: 121 IGATADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELE 180 IGATADAIDKAEDRQLFR+AM KIGL+TP+SRLANASA+KK+DRD YLA++ KLSG L Sbjct: 121 IGATADAIDKAEDRQLFREAMTKIGLETPKSRLANASAMKKADRDSYLAEKEKLSGEALA 180 Query: 181 AFKRQWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGGTG 228 F+RQW GENERRKRYQQQA+AEALMALS+IGLPAI+RPSFT+GG G Sbjct: 181 EFERQWTLGENERRKRYQQQAMAEALMALSEIGLPAIVRPSFTMGGKG 228 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 52/222 (23%) Query: 5 TDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPELADAT 64 +D + ++I+G GP IGQ EFDY AC L E GY ++VN NP T+ TD + AD Sbjct: 613 SDKTKVVILGGGPNRIGQGIEFDYCCCHACFALSEAGYETIMVNCNPETVSTDYDTADRL 672 Query: 65 YIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEMIGAT 124 Y EP+T E V +II+ ER ++ GGQT L A + LE DV ++G + Sbjct: 673 YFEPLTAEDVLEIIDTERQNGT-LHGVIVQFGGQTPLKLARA------LEAADVPILGTS 725 Query: 125 ADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELEAFKR 184 +AID AEDR F+ ++++ L+ P++ +A Y +QA+L Sbjct: 726 PEAIDLAEDRDRFKRILDRLKLKQPKNGIA------------YSVEQARLVA-------- 765 Query: 185 QWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGG 226 +D+GLP ++RPS+ LGG Sbjct: 766 -------------------------ADLGLPLVVRPSYVLGG 782 >ref|YP_319054.1| carbamoyl phosphate synthase large subunit [Nitrobacter winogradskyi Nb-255] gb|ABA05702.1| carbamoyl-phosphate synthase large subunit [Nitrobacter winogradskyi Nb-255] Length = 1154 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/228 (86%), Positives = 212/228 (92%) Query: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPEL 60 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQA K LKEEGYR+VLVNSNPATIMTDP+L Sbjct: 1 MPKRTDISTILIIGAGPIVIGQACEFDYSGTQAVKALKEEGYRVVLVNSNPATIMTDPDL 60 Query: 61 ADATYIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEM 120 ADATYIEPITPEIV KIIEKERHV PGGFALLPTMGGQTALNCALSLR+QGTLE FDVEM Sbjct: 61 ADATYIEPITPEIVGKIIEKERHVVPGGFALLPTMGGQTALNCALSLRRQGTLEDFDVEM 120 Query: 121 IGATADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELE 180 IGATADAIDKAEDRQLFR+AM +IGL+TP+SRLANASA+KK+DRD YLA++ KLSG L Sbjct: 121 IGATADAIDKAEDRQLFREAMTRIGLETPKSRLANASAMKKADRDAYLAEKEKLSGDALA 180 Query: 181 AFKRQWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGGTG 228 +RQW GE ERRKRYQQQA+AEALMALS+IGLPAIIRPSFT+GGTG Sbjct: 181 ELERQWTLGEGERRKRYQQQAMAEALMALSEIGLPAIIRPSFTMGGTG 228 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 52/222 (23%) Query: 5 TDISTILIIGAGPIVIGQACEFDYSGTQACKTLKEEGYRIVLVNSNPATIMTDPELADAT 64 +D + ++I+G GP IGQ EFDY AC L + G+ ++VN NP T+ TD + AD Sbjct: 613 SDKTKVVILGGGPNRIGQGIEFDYCCCHACFALSDAGFETIMVNCNPETVSTDYDTADRL 672 Query: 65 YIEPITPEIVAKIIEKERHVAPGGFALLPTMGGQTALNCALSLRKQGTLEKFDVEMIGAT 124 Y EP+T E V +II+ ER ++ GGQT L A + LE DV ++G + Sbjct: 673 YFEPLTAEDVLEIIDTERQNGT-LHGVIVQFGGQTPLKLAHA------LEAADVPILGTS 725 Query: 125 ADAIDKAEDRQLFRDAMEKIGLQTPRSRLANASALKKSDRDKYLADQAKLSGPELEAFKR 184 +AID AEDR F+ ++++ L+ P++ +A Y +QA+L Sbjct: 726 PEAIDLAEDRDRFKRILDRLKLKQPKNGIA------------YSVEQARLVA-------- 765 Query: 185 QWEGGENERRKRYQQQALAEALMALSDIGLPAIIRPSFTLGG 226 +D+GLP ++RPS+ LGG Sbjct: 766 -------------------------ADLGLPLVVRPSYVLGG 782