BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0005.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774017.1| carbamoyl phosphate synthase large subunit [Bra... 278 2e-73 ref|YP_001242595.1| carbamoyl phosphate synthase large subunit [... 275 1e-72 ref|YP_002288130.1| carbamoyl-phosphate synthase, large subunit ... 275 1e-72 ref|ZP_07025209.1| carbamoyl-phosphate synthase, large subunit [... 275 2e-72 ref|YP_001203458.1| carbamoyl phosphate synthase large subunit [... 275 2e-72 >ref|NP_774017.1| carbamoyl phosphate synthase large subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC52642.1| carbamoylphosphate synthase large subunit [Bradyrhizobium japonicum USDA 110] Length = 1154 Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/138 (95%), Positives = 138/138 (100%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRDKKDNCII+CSIEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 254 VLIEESVLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 313 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MRDAS+AVLREIGVETGGSNVQFG+NPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 314 MRDASLAVLREIGVETGGSNVQFGVNPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 373 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDEIANDITG Sbjct: 374 AKLAVGYTLDEIANDITG 391 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 10/132 (7%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 +L + + E +++ + D KD I+ +E+++ G+H+GDS P +L K + Sbjct: 831 LLFDRYLSDATEIDVDCLSDGKDT-FIVGIMEHIEEAGIHSGDSACSLPPHSLDAKMIEE 889 Query: 61 MRDASIAVLREIGVE---TGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIA 117 + + RE+ + G NVQ+ I DG + V+E+NPR SR+ +K G P+A Sbjct: 890 LERQT----RELALGLDVVGLMNVQYAIK--DGEIYVLEVNPRASRTVPFVAKVVGTPVA 943 Query: 118 KVAAKLAIGYTL 129 K+AA++ G L Sbjct: 944 KIAARIMAGEKL 955 >ref|YP_001242595.1| carbamoyl phosphate synthase large subunit [Bradyrhizobium sp. BTAi1] gb|ABQ38689.1| carbamoyl-phosphate synthase large subunit [Bradyrhizobium sp. BTAi1] Length = 1154 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/138 (95%), Positives = 137/138 (99%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRDKKDNCIIICSIEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 254 VLIEESVLGWKEYEMEVVRDKKDNCIIICSIENLDPMGVHTGDSITVAPALTLTDKEYQI 313 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MRDAS+AVLREIGVETGGSNVQFG+NP DGRMVVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 314 MRDASLAVLREIGVETGGSNVQFGVNPADGRMVVIEMNPRVSRSSALASKATGFPIAKVA 373 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDEIANDITG Sbjct: 374 AKLAVGYTLDEIANDITG 391 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 10/132 (7%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 +L + + E +++ + D KD ++ +E+++ G+H+GDS P +L + Sbjct: 831 LLFDRYLSDATEVDVDCLSDGKDT-FVVGIMEHIEEAGIHSGDSACSLPPHSLDETTIAE 889 Query: 61 MRDASIAVLREIGVE---TGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIA 117 + + RE+ + G NVQ+ I DG + V+E+NPR SR+ +K G P+A Sbjct: 890 LERQT----RELALGLDVVGLMNVQYAIK--DGTIYVLEVNPRASRTVPFVAKVVGTPVA 943 Query: 118 KVAAKLAIGYTL 129 K+AA++ G L Sbjct: 944 KIAARIMAGEKL 955 >ref|YP_002288130.1| carbamoyl-phosphate synthase, large subunit [Oligotropha carboxidovorans OM5] ref|YP_004633768.1| carbamoyl-phosphate synthase large chain CarB [Oligotropha carboxidovorans OM5] gb|ACI92265.1| carbamoyl-phosphate synthase, large subunit [Oligotropha carboxidovorans OM5] gb|AEI03950.1| carbamoyl-phosphate synthase large chain CarB [Oligotropha carboxidovorans OM4] gb|AEI07527.1| carbamoyl-phosphate synthase large chain CarB [Oligotropha carboxidovorans OM5] Length = 1109 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 134/138 (97%), Positives = 136/138 (98%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKEFEMEVVRDKKDNCIIIC+IEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 209 VLIEESVLGWKEFEMEVVRDKKDNCIIICAIENIDPMGVHTGDSITVAPALTLTDKEYQI 268 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MRDASIAVLREIGVETGGSNVQF INP DGRMVVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 269 MRDASIAVLREIGVETGGSNVQFAINPADGRMVVIEMNPRVSRSSALASKATGFPIAKVA 328 Query: 121 AKLAIGYTLDEIANDITG 138 AKLAIGYTLDEIANDITG Sbjct: 329 AKLAIGYTLDEIANDITG 346 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 18/136 (13%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 +L + + E +++ + D KD ++ +E+++ G+H+GDS P +L Sbjct: 786 LLFDRYLSDATEIDVDCLSDGKDT-FVVGIMEHIEEAGIHSGDSACSLPPYSLDA----- 839 Query: 61 MRDASIAVL----REIGVE---TGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATG 113 A++A L RE+ + G NVQ+ I DG + V+E+NPR SR+ +K G Sbjct: 840 ---ATVAELERQTRELALGLDVVGLMNVQYAIK--DGEIYVLEVNPRASRTVPFVAKVVG 894 Query: 114 FPIAKVAAKLAIGYTL 129 P+AK+AA++ G L Sbjct: 895 LPVAKIAARIMAGEKL 910 >ref|ZP_07025209.1| carbamoyl-phosphate synthase, large subunit [Afipia sp. 1NLS2] gb|EFI52351.1| carbamoyl-phosphate synthase, large subunit [Afipia sp. 1NLS2] Length = 1109 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/138 (95%), Positives = 137/138 (99%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKEFEMEVVRDKKDNCII+CSIEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 209 VLIEESVLGWKEFEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MRDAS+AVLREIGVETGGSNVQFG+NP DGRMVVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 269 MRDASLAVLREIGVETGGSNVQFGVNPADGRMVVIEMNPRVSRSSALASKATGFPIAKVA 328 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDEIANDITG Sbjct: 329 AKLAVGYTLDEIANDITG 346 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 16/135 (11%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAP-----ALTLTD 55 +L + + E +++ + D KD ++ +E+++ G+H+GDS P A T+ + Sbjct: 786 LLFDRYLSDATEVDVDCLCDGKDT-FVVGIMEHIEEAGIHSGDSACSLPPHSLDAATIAE 844 Query: 56 KEYQIMRDASIAVLREIGVET-GGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGF 114 E Q A +G++ G NVQ+ I DG + V+E+NPR SR+ +K G Sbjct: 845 LERQTRELA-------LGLDVVGLMNVQYAIK--DGEIYVLEVNPRASRTVPFVAKVVGL 895 Query: 115 PIAKVAAKLAIGYTL 129 P+AK+AA++ G L Sbjct: 896 PVAKIAARIMAGEKL 910 >ref|YP_001203458.1| carbamoyl phosphate synthase large subunit [Bradyrhizobium sp. ORS 278] emb|CAL75221.1| carbamoyl phosphate synthase, large subunit [Bradyrhizobium sp. ORS 278] Length = 1154 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/138 (94%), Positives = 137/138 (99%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRDKKDNCII+CSIEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 254 VLIEESVLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 313 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MRDAS+AVLREIGVETGGSNVQFG+NP DGRMVVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 314 MRDASLAVLREIGVETGGSNVQFGVNPADGRMVVIEMNPRVSRSSALASKATGFPIAKVA 373 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDEIANDITG Sbjct: 374 AKLAVGYTLDEIANDITG 391 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 18/136 (13%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 +L + + E +++ + D KD ++ +E+++ G+H+GDS P +L + Sbjct: 831 LLFDRYLSDATEVDVDCLSDGKDT-FVVGIMEHIEEAGIHSGDSACSLPPHSLDE----- 884 Query: 61 MRDASIAVL----REIGVE---TGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATG 113 A+IA L RE+ + G NVQ+ I DG + V+E+NPR SR+ +K G Sbjct: 885 ---ATIAELERQTRELALGLDVVGLMNVQYAIK--DGTIYVLEVNPRASRTVPFVAKVVG 939 Query: 114 FPIAKVAAKLAIGYTL 129 P+AK+AA++ G L Sbjct: 940 TPVAKIAARIMAGEKL 955