BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0022.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241694.1| putative phosphonate metabolism protein PhnJ... 560 e-157 ref|YP_570950.1| phosphonate metabolism PhnJ [Rhodopseudomonas p... 557 e-157 ref|YP_001207249.1| putative PhnJ protein, phosphonate metabolis... 556 e-156 ref|YP_782024.1| phosphonate metabolism PhnJ [Rhodopseudomonas p... 554 e-156 ref|YP_487696.1| phosphonate metabolism PhnJ [Rhodopseudomonas p... 546 e-153 >ref|YP_001241694.1| putative phosphonate metabolism protein PhnJ [Bradyrhizobium sp. BTAi1] gb|ABQ37788.1| putative PhnJ protein, phosphonate metabolism [Bradyrhizobium sp. BTAi1] Length = 294 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 274/294 (93%), Positives = 283/294 (96%) Query: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG Sbjct: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 Query: 61 PDDVLKVIDQGSDDTTNAISIRKFFGKTAGVATTTSTTDATVIQTRHRIPEASLHAGQVL 120 PDDVLKVIDQGSDDTTNAISIRKFF KTAGVATTTST ATVIQTRHRIPEA L GQVL Sbjct: 61 PDDVLKVIDQGSDDTTNAISIRKFFAKTAGVATTTSTEAATVIQTRHRIPEAPLQEGQVL 120 Query: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATAYAYPVKVNARY 180 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIAT+YAYPVKVNARY Sbjct: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATSYAYPVKVNARY 180 Query: 181 VMDPSPTPKFDNPKMDNCAALQLFGAGREKRIYAIPPYTTVVSLDFEDHPFTRYRFNAPC 240 VMDPSPTPKFDNPKMDNC ALQLFGAGREKRIYAIPPYT+VVSLDFEDHPFTRY+F+APC Sbjct: 181 VMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTSVVSLDFEDHPFTRYKFDAPC 240 Query: 241 ALCGADNSYLDEIVTDDKGGRMFVCSDTDFCEQRQAAGHHGTESAAPHKEKAHV 294 ALCGA++SYLDEIVTDDKG RMFVCSDTD+CE RQAAGH GT++AAPHKE AHV Sbjct: 241 ALCGAEDSYLDEIVTDDKGSRMFVCSDTDYCEGRQAAGHRGTQNAAPHKEGAHV 294 >ref|YP_570950.1| phosphonate metabolism PhnJ [Rhodopseudomonas palustris BisB5] gb|ABE41049.1| phosphonate metabolism PhnJ [Rhodopseudomonas palustris BisB5] Length = 293 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 267/292 (91%), Positives = 277/292 (94%), Gaps = 1/292 (0%) Query: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 MNAP YNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG Sbjct: 1 MNAPHYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 Query: 61 PDDVLKVIDQGSDDTTNAISIRKFFGKTAGVATTTSTTDATVIQTRHRIPEASLHAGQVL 120 PDDVLKVIDQGSDDTTNAISIRKFF KTAGVATTTST DA+VIQTRHRIPEA LH GQVL Sbjct: 61 PDDVLKVIDQGSDDTTNAISIRKFFAKTAGVATTTSTADASVIQTRHRIPEAPLHEGQVL 120 Query: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATAYAYPVKVNARY 180 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIA+FGHIAT+YAYPVKVNARY Sbjct: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIAKFGHIATSYAYPVKVNARY 180 Query: 181 VMDPSPTPKFDNPKMDNCAALQLFGAGREKRIYAIPPYTTVVSLDFEDHPFTRYRFNAPC 240 VMDPSPTPKFDNPKMD+C ALQLFGAGREKRIYAIPPYT VVSLDFEDHPFTRYR +APC Sbjct: 181 VMDPSPTPKFDNPKMDDCPALQLFGAGREKRIYAIPPYTQVVSLDFEDHPFTRYRQDAPC 240 Query: 241 ALCGADNSYLDEIVTDDKGGRMFVCSDTDFCEQRQAAGHHGTESAAPHKEKA 292 ALCGA++SYLDEIVTDD+GGRMFVCSDTD+CE RQA GH G+ES AP E A Sbjct: 241 ALCGAEDSYLDEIVTDDRGGRMFVCSDTDYCETRQAQGHRGSES-APQTESA 291 >ref|YP_001207249.1| putative PhnJ protein, phosphonate metabolism [Bradyrhizobium sp. ORS 278] emb|CAL79032.1| putative PhnJ protein, phosphonate metabolism [Bradyrhizobium sp. ORS 278] Length = 294 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 273/293 (93%), Positives = 283/293 (96%) Query: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG Sbjct: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 Query: 61 PDDVLKVIDQGSDDTTNAISIRKFFGKTAGVATTTSTTDATVIQTRHRIPEASLHAGQVL 120 PDDVLKVIDQGSDDTTNAISIRKFF KTAGVATTTST ATVIQTRHRIPEA L AGQVL Sbjct: 61 PDDVLKVIDQGSDDTTNAISIRKFFAKTAGVATTTSTDAATVIQTRHRIPEAPLRAGQVL 120 Query: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATAYAYPVKVNARY 180 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIAT+YAYPVKVNARY Sbjct: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATSYAYPVKVNARY 180 Query: 181 VMDPSPTPKFDNPKMDNCAALQLFGAGREKRIYAIPPYTTVVSLDFEDHPFTRYRFNAPC 240 VMDPSPTPKFDNPKMDNC ALQLFGAGREKRIYAIPPYT+VVSLDFEDHPFTRY+F+APC Sbjct: 181 VMDPSPTPKFDNPKMDNCPALQLFGAGREKRIYAIPPYTSVVSLDFEDHPFTRYKFDAPC 240 Query: 241 ALCGADNSYLDEIVTDDKGGRMFVCSDTDFCEQRQAAGHHGTESAAPHKEKAH 293 ALCGA++SYLDEIVT++KG RM+VCSDTD+CE RQAAGH GTESAAPHKE AH Sbjct: 241 ALCGAEDSYLDEIVTNNKGSRMYVCSDTDYCEGRQAAGHCGTESAAPHKEAAH 293 >ref|YP_782024.1| phosphonate metabolism PhnJ [Rhodopseudomonas palustris BisA53] gb|ABJ07044.1| phosphonate metabolism PhnJ [Rhodopseudomonas palustris BisA53] Length = 293 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 263/292 (90%), Positives = 280/292 (95%), Gaps = 1/292 (0%) Query: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 MNAP YNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG Sbjct: 1 MNAPAYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 Query: 61 PDDVLKVIDQGSDDTTNAISIRKFFGKTAGVATTTSTTDATVIQTRHRIPEASLHAGQVL 120 PDDVLKVIDQGSDDTTNAISIRKFF KTAGVATTT+TTDA+VIQTRHRIPEA LH GQVL Sbjct: 61 PDDVLKVIDQGSDDTTNAISIRKFFAKTAGVATTTNTTDASVIQTRHRIPEAPLHEGQVL 120 Query: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATAYAYPVKVNARY 180 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIA+FGHIATAYAYPVKVN RY Sbjct: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIAKFGHIATAYAYPVKVNGRY 180 Query: 181 VMDPSPTPKFDNPKMDNCAALQLFGAGREKRIYAIPPYTTVVSLDFEDHPFTRYRFNAPC 240 VMDPSPTPKFDNPKMD+C ALQLFGAGREKRIYAIPPYT VVSLDFEDHPFTRYR +APC Sbjct: 181 VMDPSPTPKFDNPKMDDCPALQLFGAGREKRIYAIPPYTRVVSLDFEDHPFTRYRQDAPC 240 Query: 241 ALCGADNSYLDEIVTDDKGGRMFVCSDTDFCEQRQAAGHHGTESAAPHKEKA 292 ALCGA++S+LDEIV DD+GGRMFVCSDTD+CE R+A GHHG+E+ AP++E++ Sbjct: 241 ALCGAEDSFLDEIVIDDQGGRMFVCSDTDYCETRRAQGHHGSET-APYQERS 291 >ref|YP_487696.1| phosphonate metabolism PhnJ [Rhodopseudomonas palustris HaA2] gb|ABD08785.1| Phosphonate metabolism PhnJ [Rhodopseudomonas palustris HaA2] Length = 293 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/292 (90%), Positives = 279/292 (95%), Gaps = 1/292 (0%) Query: 1 MNAPTYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 MNAP YNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG Sbjct: 1 MNAPQYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTAAILG 60 Query: 61 PDDVLKVIDQGSDDTTNAISIRKFFGKTAGVATTTSTTDATVIQTRHRIPEASLHAGQVL 120 PDDVLKVIDQGSDDTTNAISIRKFF KTAGVATTTSTTDA+VIQTRHRIPEA LH GQVL Sbjct: 61 PDDVLKVIDQGSDDTTNAISIRKFFAKTAGVATTTSTTDASVIQTRHRIPEAPLHEGQVL 120 Query: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIARFGHIATAYAYPVKVNARY 180 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIA+FGHIAT+YAYPVKVN+RY Sbjct: 121 VYQVPIPEPLRFLEPRETETRRMHALAEYGLMHVKLYEDIAKFGHIATSYAYPVKVNSRY 180 Query: 181 VMDPSPTPKFDNPKMDNCAALQLFGAGREKRIYAIPPYTTVVSLDFEDHPFTRYRFNAPC 240 VMDPSPTPKFDNPKMD+C ALQLFGAGREKRIYAIPPYT VVSLDF+DHPFTRYR +APC Sbjct: 181 VMDPSPTPKFDNPKMDDCPALQLFGAGREKRIYAIPPYTHVVSLDFQDHPFTRYRQDAPC 240 Query: 241 ALCGADNSYLDEIVTDDKGGRMFVCSDTDFCEQRQAAGHHGTESAAPHKEKA 292 ALCG++ SYLDEIVTDD+GGRMFVCSDTD+CE RQ GH G+ES APH+E+A Sbjct: 241 ALCGSEESYLDEIVTDDRGGRMFVCSDTDYCETRQVQGHRGSES-APHQERA 291