BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0018.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767860.1| transcriptional regulator [Bradyrhizobium japon... 411 e-113 ref|YP_001207253.1| transcriptional regulator [Bradyrhizobium sp... 350 1e-94 ref|YP_001241698.1| GntR family transcriptional regulator [Brady... 349 2e-94 ref|YP_531168.1| GntR family transcriptional regulator [Rhodopse... 348 6e-94 ref|YP_782028.1| GntR family transcriptional regulator [Rhodopse... 329 2e-88 >ref|NP_767860.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46485.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/241 (86%), Positives = 222/241 (92%), Gaps = 2/241 (0%) Query: 1 MQE--SSGVALWRQVADGIERGIADGRFAAGEKLPGEMEIAETYRVNRHTVRRALAALAE 58 MQ+ S+GVALWR VADGIERGIADGRFAAG+KLPGEMEIAETYRVNRHTVRRALAALAE Sbjct: 3 MQDTASTGVALWRLVADGIERGIADGRFAAGDKLPGEMEIAETYRVNRHTVRRALAALAE 62 Query: 59 RGLVRAERGSGTYVEAQRLAYPLRSRTRFSEIVGAGGHEPRGQLIEAGDDVANREIAREL 118 RGLVRAERGSGTYVEAQR+AYPLRSRTRFSEIVGAGG EPRGQLIEA DDVA RE+AREL Sbjct: 63 RGLVRAERGSGTYVEAQRIAYPLRSRTRFSEIVGAGGREPRGQLIEASDDVATRELAREL 122 Query: 119 GLKIGAPLIRIEAVRLADRTPICVSTTWLSAERFPDAGSVFANVRSMTKLLGHYGVKDYH 178 GLK+GAPL+RIEA+RLADRTPICVSTTWLSAE FP AGSVFA RSMTKLL H+GV+DY Sbjct: 123 GLKVGAPLVRIEAIRLADRTPICVSTTWLSAELFPGAGSVFAATRSMTKLLEHFGVRDYR 182 Query: 179 RASTRITAAIVDATDAARLDLPLGRPVLVVDATDVDMLDQPLVTKRSRFAAERVEFLVEN 238 R +TRITA IVDATDAARLDLPLGRP+LVVDATD + +PLVTK SRFAAERVEFLVEN Sbjct: 183 RGATRITAGIVDATDAARLDLPLGRPILVVDATDHGLDGKPLVTKHSRFAAERVEFLVEN 242 Query: 239 G 239 G Sbjct: 243 G 243 >ref|YP_001207253.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL79036.1| putative transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain [Bradyrhizobium sp. ORS 278] Length = 241 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 185/234 (79%), Positives = 203/234 (86%) Query: 5 SGVALWRQVADGIERGIADGRFAAGEKLPGEMEIAETYRVNRHTVRRALAALAERGLVRA 64 SGVALWR+VADGIER IA+GRF AG +LPGE EIAE+YRVNRHTVRRALA LAERGLVRA Sbjct: 8 SGVALWRRVADGIEREIAEGRFPAGTRLPGETEIAESYRVNRHTVRRALATLAERGLVRA 67 Query: 65 ERGSGTYVEAQRLAYPLRSRTRFSEIVGAGGHEPRGQLIEAGDDVANREIARELGLKIGA 124 ERGSGTYVEA RL+YPLRSRTRFSEIVGAGG EPRGQLI A ++ A RE+AR LGLK GA Sbjct: 68 ERGSGTYVEAPRLSYPLRSRTRFSEIVGAGGREPRGQLIAASEEPATRELARALGLKTGA 127 Query: 125 PLIRIEAVRLADRTPICVSTTWLSAERFPDAGSVFANVRSMTKLLGHYGVKDYHRASTRI 184 PLIRIEA+R AD+TPICVST++LSAERFPDAG +FA VRSMT LL HYG++DY R TRI Sbjct: 128 PLIRIEALRFADKTPICVSTSFLSAERFPDAGGIFAAVRSMTALLAHYGIRDYRRGGTRI 187 Query: 185 TAAIVDATDAARLDLPLGRPVLVVDATDVDMLDQPLVTKRSRFAAERVEFLVEN 238 TAAI DA DAARLDL LGRPVLVVD+TD+D PLV+KRSRFAAERV F VE Sbjct: 188 TAAIADAGDAARLDLALGRPVLVVDSTDIDADGTPLVSKRSRFAAERVTFEVEG 241 >ref|YP_001241698.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37792.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1] Length = 241 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 184/233 (78%), Positives = 202/233 (86%) Query: 5 SGVALWRQVADGIERGIADGRFAAGEKLPGEMEIAETYRVNRHTVRRALAALAERGLVRA 64 SGVALWR+VADGIER IA GRFAAG +LPGE EIAETYRVNRHTVRRALA LAERGLVRA Sbjct: 8 SGVALWRRVADGIERDIAGGRFAAGARLPGETEIAETYRVNRHTVRRALAMLAERGLVRA 67 Query: 65 ERGSGTYVEAQRLAYPLRSRTRFSEIVGAGGHEPRGQLIEAGDDVANREIARELGLKIGA 124 ERGSGTYVEA RL+YPLRSRTRFSEIVGAGG EPRGQLI + ++ A RE+AREL LK GA Sbjct: 68 ERGSGTYVEAPRLSYPLRSRTRFSEIVGAGGREPRGQLIASSEEPATRELARELALKTGA 127 Query: 125 PLIRIEAVRLADRTPICVSTTWLSAERFPDAGSVFANVRSMTKLLGHYGVKDYHRASTRI 184 PLIRIEA+R AD+TPICVST+WLSAERFPDA +FA RSMT LL HYG++DY R TRI Sbjct: 128 PLIRIEALRFADKTPICVSTSWLSAERFPDAARIFATTRSMTALLAHYGMRDYRRGKTRI 187 Query: 185 TAAIVDATDAARLDLPLGRPVLVVDATDVDMLDQPLVTKRSRFAAERVEFLVE 237 TAAI DA+DAARLDL LGRPVLVV++TD+D PLV+KRSRFAAERV F VE Sbjct: 188 TAAIADASDAARLDLALGRPVLVVESTDIDADGTPLVSKRSRFAAERVTFEVE 240 >ref|YP_531168.1| GntR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD86849.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris BisB18] Length = 242 Score = 348 bits (892), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 166/238 (69%), Positives = 202/238 (84%) Query: 1 MQESSGVALWRQVADGIERGIADGRFAAGEKLPGEMEIAETYRVNRHTVRRALAALAERG 60 + + SGVALWR+VAD IERGIADG + GE+LPGE+EIAE +RVNRHTVRRALAALAERG Sbjct: 4 LDQDSGVALWRRVADSIERGIADGSYPNGERLPGEVEIAEAHRVNRHTVRRALAALAERG 63 Query: 61 LVRAERGSGTYVEAQRLAYPLRSRTRFSEIVGAGGHEPRGQLIEAGDDVANREIARELGL 120 LVRA RGSGTYV+A +L+YPL +RTRFSEIVGAGG EPRGQLI + DD+A+R++AR+LG+ Sbjct: 64 LVRAARGSGTYVQASKLSYPLHARTRFSEIVGAGGREPRGQLIGSSDDIASRDLARQLGV 123 Query: 121 KIGAPLIRIEAVRLADRTPICVSTTWLSAERFPDAGSVFANVRSMTKLLGHYGVKDYHRA 180 K+ APL+R+E +RLADR PICV TTWLSA RFPDA +++ SMTK+L HYG++DY R Sbjct: 124 KLNAPLVRLETLRLADRVPICVGTTWLSAARFPDAAAIYQRTGSMTKMLAHYGIRDYRRG 183 Query: 181 STRITAAIVDATDAARLDLPLGRPVLVVDATDVDMLDQPLVTKRSRFAAERVEFLVEN 238 +R+TA IVDA+DA RLDL LGRPVLVVD+TDV +PL TK SRFAA+RVEF++EN Sbjct: 184 VSRVTAGIVDASDAGRLDLELGRPVLVVDSTDVAPDGEPLQTKHSRFAADRVEFVIEN 241 >ref|YP_782028.1| GntR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ07048.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris BisA53] Length = 242 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/238 (71%), Positives = 200/238 (84%) Query: 1 MQESSGVALWRQVADGIERGIADGRFAAGEKLPGEMEIAETYRVNRHTVRRALAALAERG 60 ++ SGVALWR+VAD IER IADG F AGEKLPGE+EIA+ +RVNRHTVRRALAALAERG Sbjct: 4 LEPDSGVALWRKVADSIERKIADGSFPAGEKLPGEVEIAQAHRVNRHTVRRALAALAERG 63 Query: 61 LVRAERGSGTYVEAQRLAYPLRSRTRFSEIVGAGGHEPRGQLIEAGDDVANREIARELGL 120 LVRAERGSGTYVE RLAYPLR+R RFSEIVGAGG EPRGQL+ A D+ A +E+AR+L L Sbjct: 64 LVRAERGSGTYVETSRLAYPLRARMRFSEIVGAGGREPRGQLLAANDEAATKELARQLDL 123 Query: 121 KIGAPLIRIEAVRLADRTPICVSTTWLSAERFPDAGSVFANVRSMTKLLGHYGVKDYHRA 180 K APLIRI+A+RLAD+ PICV TTWLSAERFP+AG ++ SMT++L HYG++DY RA Sbjct: 124 KPNAPLIRIDALRLADKAPICVGTTWLSAERFPEAGELYRRFGSMTRVLAHYGIRDYRRA 183 Query: 181 STRITAAIVDATDAARLDLPLGRPVLVVDATDVDMLDQPLVTKRSRFAAERVEFLVEN 238 STRITAA+ DA DAARLDL +GRPVL+VD DVD +PL+ R+RFAAER+EF+VE Sbjct: 184 STRITAALADAGDAARLDLGIGRPVLIVDGLDVDDKGRPLLAIRARFAAERMEFVVET 241