BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0016.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241705.1| putative phosphonate ABC transporter membran... 475 e-132 ref|NP_774585.1| phosphonates transport system permease protein ... 464 e-129 ref|YP_001207260.1| putative PhnE protein, phosphonate ABC trans... 457 e-126 ref|YP_534272.1| phosphonate ABC transporter permease [Rhodopseu... 424 e-117 ref|YP_570944.1| phosphonate ABC transporter permease [Rhodopseu... 408 e-112 >ref|YP_001241705.1| putative phosphonate ABC transporter membrane protein PhnE [Bradyrhizobium sp. BTAi1] gb|ABQ37799.1| putative PhnE protein, phosphonate ABC transporter, putative membrane protein [Bradyrhizobium sp. BTAi1] Length = 294 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 239/293 (81%), Positives = 265/293 (90%) Query: 1 MATAVSILPAQQLATLEDAYRRSVARKRLKAALAVAAFCAVLVIAAFGAEVNLRTLFTYF 60 MA AVSILP+QQLA L YRR+V R+RL+ A++ F AVL++AA GAEVNLRTL+TYF Sbjct: 1 MAVAVSILPSQQLAALNGVYRRAVFRRRLRFAISAVVFIAVLLVAAVGAEVNLRTLYTYF 60 Query: 61 GNFVSYFDRILTLDSGARVWTDLPEWFWGWKKWLKMLGETLLISYVGTLTGAVFAFALNF 120 GNFVSYFDRI TLD G RVWT++PEWFWG KKWLK+LGETLLISYVGT+ G V AF LNF Sbjct: 61 GNFVSYFDRIFTLDDGQRVWTNIPEWFWGLKKWLKLLGETLLISYVGTIAGMVVAFCLNF 120 Query: 121 FAAQNTSPGPWLRFVVRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 AA+NTSP PW+RFVVRRLLEFARTVPGIVFALIFVIAFGLGP+ GVLAIA+HS+GALGK Sbjct: 121 LAAENTSPAPWIRFVVRRLLEFARTVPGIVFALIFVIAFGLGPIPGVLAIAVHSSGALGK 180 Query: 181 LFAEIVENADMKPVEGIRSTGASWLSCMRFAVLPQVSAGYASYALLRFEINVREASVMGF 240 LF+E+VENADMKPVEGIR+TGASWLSCMRFAVLPQV AG++SY LLRFEINVREASVMGF Sbjct: 181 LFSEVVENADMKPVEGIRATGASWLSCMRFAVLPQVIAGFSSYTLLRFEINVREASVMGF 240 Query: 241 VGAGGIGQELVVAIRKFYYSDVSAILVTIIITVFIIDISTGWLRGRLFGKETR 293 VGAGGIGQELVVAIRKFYYSDVSAILV I++TVF+IDISTGWLRGRLFG E R Sbjct: 241 VGAGGIGQELVVAIRKFYYSDVSAILVMIVLTVFLIDISTGWLRGRLFGAEAR 293 >ref|NP_774585.1| phosphonates transport system permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53210.1| phosphonates transport system permease protein [Bradyrhizobium japonicum USDA 110] Length = 294 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 252/293 (86%), Positives = 268/293 (91%) Query: 1 MATAVSILPAQQLATLEDAYRRSVARKRLKAALAVAAFCAVLVIAAFGAEVNLRTLFTYF 60 M AVSILP QQLA L AY ++VAR+RL+ L + F A L++AA GAEVNLRT FTYF Sbjct: 1 MTLAVSILPEQQLAALNTAYNQAVARRRLRLLLGIVVFAAALLLAAIGAEVNLRTFFTYF 60 Query: 61 GNFVSYFDRILTLDSGARVWTDLPEWFWGWKKWLKMLGETLLISYVGTLTGAVFAFALNF 120 GNFVSYFDRILTLD+G RVWTD+ EW WGW+KWLKMLGETLLISYVGTLTGA AF LNF Sbjct: 61 GNFVSYFDRILTLDNGQRVWTDVGEWLWGWRKWLKMLGETLLISYVGTLTGATLAFVLNF 120 Query: 121 FAAQNTSPGPWLRFVVRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 FAA+NTSP PWLRF VRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK Sbjct: 121 FAAENTSPAPWLRFTVRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 Query: 181 LFAEIVENADMKPVEGIRSTGASWLSCMRFAVLPQVSAGYASYALLRFEINVREASVMGF 240 LF+EIVENADMKPVEGIRSTGASWLSCMRFAV+PQV+AGYASYALLRFEINVREASVMGF Sbjct: 181 LFSEIVENADMKPVEGIRSTGASWLSCMRFAVVPQVTAGYASYALLRFEINVREASVMGF 240 Query: 241 VGAGGIGQELVVAIRKFYYSDVSAILVTIIITVFIIDISTGWLRGRLFGKETR 293 VGAGGIGQELVVAIRKFYYSDVSAIL+TIIITVFIIDI+TGWLRGRLFGKE R Sbjct: 241 VGAGGIGQELVVAIRKFYYSDVSAILLTIIITVFIIDITTGWLRGRLFGKEAR 293 >ref|YP_001207260.1| putative PhnE protein, phosphonate ABC transporter membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL79043.1| putative PhnE protein, phosphonate ABC transporter, putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 294 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 237/293 (80%), Positives = 264/293 (90%) Query: 1 MATAVSILPAQQLATLEDAYRRSVARKRLKAALAVAAFCAVLVIAAFGAEVNLRTLFTYF 60 MA AVSILP+QQL L DAYRR+V+R+RL+ AL F AVL+ AA GAEVNLRT FTYF Sbjct: 1 MAVAVSILPSQQLEALSDAYRRAVSRRRLRLALCGLVFLAVLLAAAVGAEVNLRTFFTYF 60 Query: 61 GNFVSYFDRILTLDSGARVWTDLPEWFWGWKKWLKMLGETLLISYVGTLTGAVFAFALNF 120 GNF+SYFDRI TLD G RVWT++PEWFWG+KKW+K+LGETLLISYVGTL G + AF LNF Sbjct: 61 GNFLSYFDRIFTLDDGHRVWTNVPEWFWGFKKWIKLLGETLLISYVGTLAGMLVAFCLNF 120 Query: 121 FAAQNTSPGPWLRFVVRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 AA+NTSP PW+RF VRR+LEFARTVPGIVFALIFVIAFGLGP+AGVLAIA+HS+GALGK Sbjct: 121 LAAENTSPAPWVRFTVRRVLEFARTVPGIVFALIFVIAFGLGPVAGVLAIALHSSGALGK 180 Query: 181 LFAEIVENADMKPVEGIRSTGASWLSCMRFAVLPQVSAGYASYALLRFEINVREASVMGF 240 LF+E+VENADMKPVEGIR+TGASWLSCMRFAVLPQV AG++SY LLRFEINVREASVMGF Sbjct: 181 LFSEVVENADMKPVEGIRATGASWLSCMRFAVLPQVIAGFSSYTLLRFEINVREASVMGF 240 Query: 241 VGAGGIGQELVVAIRKFYYSDVSAILVTIIITVFIIDISTGWLRGRLFGKETR 293 VGAGGIGQELVVAIRKFYYSDVSAILV I++TVF+IDI TGWLRGRLFG E R Sbjct: 241 VGAGGIGQELVVAIRKFYYSDVSAILVMIVVTVFLIDIGTGWLRGRLFGAEAR 293 >ref|YP_534272.1| phosphonate ABC transporter permease [Rhodopseudomonas palustris BisB18] gb|ABD89953.1| Phosphonate uptake transporter [Rhodopseudomonas palustris BisB18] Length = 293 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/291 (75%), Positives = 244/291 (83%) Query: 1 MATAVSILPAQQLATLEDAYRRSVARKRLKAALAVAAFCAVLVIAAFGAEVNLRTLFTYF 60 MA AVS+LP QQLA L DAYR +VARKRL+ A+ A A L+ AA GAEVNL T Sbjct: 1 MAVAVSVLPEQQLAALNDAYRHAVARKRLRFAIGAAIAVAALLAAAVGAEVNLSTFIAKI 60 Query: 61 GNFVSYFDRILTLDSGARVWTDLPEWFWGWKKWLKMLGETLLISYVGTLTGAVFAFALNF 120 GNFVSYFDRI TL+SGARVW+D EWFWG+ KWL +LGET+LISYVGTL+GAV A LNF Sbjct: 61 GNFVSYFDRIFTLESGARVWSDPGEWFWGFHKWLALLGETVLISYVGTLSGAVLALLLNF 120 Query: 121 FAAQNTSPGPWLRFVVRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 AA+NT+P PWLR V R LEF RTVP IVFALIFVIAFGLGPMAGVLAIAIHSTGALGK Sbjct: 121 VAAKNTAPQPWLRIVAMRYLEFCRTVPDIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 Query: 181 LFAEIVENADMKPVEGIRSTGASWLSCMRFAVLPQVSAGYASYALLRFEINVREASVMGF 240 F+EIVEN DMKPVEG+R+TGA W SCMRFAVLPQV+AG+A YALLRFE+NVR ASVMGF Sbjct: 181 QFSEIVENVDMKPVEGVRATGAGWFSCMRFAVLPQVAAGFAGYALLRFEMNVRGASVMGF 240 Query: 241 VGAGGIGQELVVAIRKFYYSDVSAILVTIIITVFIIDISTGWLRGRLFGKE 291 VGAGGIGQELVVAIRKFYYSDVSAIL+ II TVF+IDI TG +RGRLFG + Sbjct: 241 VGAGGIGQELVVAIRKFYYSDVSAILLLIIATVFVIDIGTGVVRGRLFGGQ 291 >ref|YP_570944.1| phosphonate ABC transporter permease [Rhodopseudomonas palustris BisB5] gb|ABE41043.1| Phosphonate uptake transporter [Rhodopseudomonas palustris BisB5] Length = 300 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/292 (73%), Positives = 243/292 (83%) Query: 1 MATAVSILPAQQLATLEDAYRRSVARKRLKAALAVAAFCAVLVIAAFGAEVNLRTLFTYF 60 MA AVS+LP QL L AYR + +R+R ++ALA L+ AAFGAEV+L TL + Sbjct: 9 MALAVSLLPDPQLDALHTAYRNAKSRRRRRSALAFGIGLLALLTAAFGAEVDLGTLVSKI 68 Query: 61 GNFVSYFDRILTLDSGARVWTDLPEWFWGWKKWLKMLGETLLISYVGTLTGAVFAFALNF 120 GNF SYFDRI L++GAR WTD EWFWGW+KWL +LGET+LISYVGTL GAV A LNF Sbjct: 69 GNFFSYFDRIFRLENGARAWTDPTEWFWGWRKWLSLLGETILISYVGTLIGAVLALLLNF 128 Query: 121 FAAQNTSPGPWLRFVVRRLLEFARTVPGIVFALIFVIAFGLGPMAGVLAIAIHSTGALGK 180 AAQNT+P PWL FV RR +E RTVP IVFAL+FVIAFGLGPMAGVLAIAIH+TGALGK Sbjct: 129 LAAQNTAPHPWLLFVTRRFMEVCRTVPDIVFALVFVIAFGLGPMAGVLAIAIHTTGALGK 188 Query: 181 LFAEIVENADMKPVEGIRSTGASWLSCMRFAVLPQVSAGYASYALLRFEINVREASVMGF 240 LFAEIVEN DMKPVEG+RSTGA W++CMRFAVLPQ AG+ASYALLRFE+NVR ASVMGF Sbjct: 189 LFAEIVENIDMKPVEGVRSTGAGWMACMRFAVLPQAIAGFASYALLRFEVNVRGASVMGF 248 Query: 241 VGAGGIGQELVVAIRKFYYSDVSAILVTIIITVFIIDISTGWLRGRLFGKET 292 VGAGGIGQELVVAIRKFYYSDVSAIL+ I++TVF+IDISTGW+RGRLFG T Sbjct: 249 VGAGGIGQELVVAIRKFYYSDVSAILLMIVVTVFLIDISTGWIRGRLFGGRT 300