BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0012.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774590.1| hypothetical protein blr7950 [Bradyrhizobium ja... 316 1e-84 ref|YP_487685.1| hypothetical protein RPB_4081 [Rhodopseudomonas... 293 1e-77 ref|YP_001207265.1| hypothetical protein BRADO5369 [Bradyrhizobi... 293 2e-77 ref|YP_570939.1| hypothetical protein RPD_3817 [Rhodopseudomonas... 282 2e-74 ref|YP_004107123.1| phosphonate metabolism protein [Rhodopseudom... 279 3e-73 >ref|NP_774590.1| hypothetical protein blr7950 [Bradyrhizobium japonicum USDA 110] dbj|BAC53215.1| blr7950 [Bradyrhizobium japonicum USDA 110] Length = 232 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 159/230 (69%), Positives = 179/230 (77%), Gaps = 3/230 (1%) Query: 1 MASTPRYAIYYAPSPDSALHRFGSTLLGYDAVSGDDLPFPD---GVTPDWREVTEDPRKY 57 M PRYAIY+A DSAL RFG+ LLGYDA +GD++PFP V PDWR+V+ DPRKY Sbjct: 1 MTGFPRYAIYFAAGADSALTRFGAKLLGYDAYTGDEVPFPPEALHVAPDWRDVSADPRKY 60 Query: 58 GFHATLKAPTALAAGRSEAELLDACAAFAGRARRIPVIEPVVDAISGFIAVIPAGRSDEL 117 GFHATLKAP AL G +EAEL+ ACA FA AR IP I P+VD ISGFIAVIPA D L Sbjct: 61 GFHATLKAPMALTPGSTEAELMAACATFAETARPIPAIRPIVDTISGFIAVIPAEPVDAL 120 Query: 118 QQLAADCVAEFDAFRAPLTAADRARRKPERLTARQCDYLDRWGYPYVMEEFRFHMTLTGR 177 QQLAADC EFD+FRA LTA DRARRKP++LT RQ DYLDRWGYPYVMEEFRFHMTLTGR Sbjct: 121 QQLAADCAREFDSFRAALTAEDRARRKPDKLTERQRDYLDRWGYPYVMEEFRFHMTLTGR 180 Query: 178 LSDERRGPIVAQLRERFAAIELATLAIDRIALLKQADGASRFRIIGSWQL 227 L ERRGPI+ LR RFA++ L TLAIDR+AL +Q + +RFRIIG W L Sbjct: 181 LDAERRGPILEMLRTRFASLRLDTLAIDRLALFRQNETKARFRIIGEWAL 230 >ref|YP_487685.1| hypothetical protein RPB_4081 [Rhodopseudomonas palustris HaA2] gb|ABD08774.1| Protein of unknown function DUF1045 [Rhodopseudomonas palustris HaA2] Length = 234 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 148/231 (64%), Positives = 169/231 (73%), Gaps = 3/231 (1%) Query: 1 MASTPRYAIYYAPSPDSALHRFGSTLLGYDAVSGDDLPFPDGVT---PDWREVTEDPRKY 57 M PRYAIYY P P S L RFGS LLGYD V+G + PFP+ +T PDW +T +PRKY Sbjct: 1 MTQIPRYAIYYLPPPGSVLDRFGSALLGYDVVTGAEPPFPEAMTRAVPDWAAITREPRKY 60 Query: 58 GFHATLKAPTALAAGRSEAELLDACAAFAGRARRIPVIEPVVDAISGFIAVIPAGRSDEL 117 GFHATLKAP ALAAG+SEAELL ACA FA R IPVI PVV +I FIAV+P+ SDEL Sbjct: 61 GFHATLKAPIALAAGQSEAELLWACATFAETPRAIPVIAPVVQSIGSFIAVVPSAPSDEL 120 Query: 118 QQLAADCVAEFDAFRAPLTAADRARRKPERLTARQCDYLDRWGYPYVMEEFRFHMTLTGR 177 QLA DCV FD FRAPLTAADRARRKP +LT RQ YLD WGYPYV+EEFRFHMTLTG Sbjct: 121 VQLATDCVRSFDTFRAPLTAADRARRKPAQLTPRQIQYLDHWGYPYVIEEFRFHMTLTGS 180 Query: 178 LSDERRGPIVAQLRERFAAIELATLAIDRIALLKQADGASRFRIIGSWQLR 228 L R ++ LR++F ++L TLAIDRIA+ +Q RFR IG +QLR Sbjct: 181 LDRVRHVELLGLLRQQFDVLDLGTLAIDRIAVCRQDSAGERFRSIGQFQLR 231 >ref|YP_001207265.1| hypothetical protein BRADO5369 [Bradyrhizobium sp. ORS 278] emb|CAL79048.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 233 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 147/233 (63%), Positives = 175/233 (75%), Gaps = 3/233 (1%) Query: 1 MASTPRYAIYYAPSPDSALHRFGSTLLGYDAVSGDDLPFPDGV---TPDWREVTEDPRKY 57 M PRYAIYY P+PD+AL FG+ LLGYDA + + FP G+ DW E+T D RKY Sbjct: 1 MEGYPRYAIYYTPAPDTALSVFGAHLLGYDAWTAQERDFPSGILDTIADWAELTADARKY 60 Query: 58 GFHATLKAPTALAAGRSEAELLDACAAFAGRARRIPVIEPVVDAISGFIAVIPAGRSDEL 117 GFHATLKAP L R+EAEL+ ACAAFA R +P+I PV+DAISGFIAVIP+ L Sbjct: 61 GFHATLKAPFPLHDARTEAELISACAAFATTPRTVPIIGPVIDAISGFIAVIPSEVVPRL 120 Query: 118 QQLAADCVAEFDAFRAPLTAADRARRKPERLTARQCDYLDRWGYPYVMEEFRFHMTLTGR 177 QQLAADCV F+ FRAP++A DRARR+PE LT RQ +LDRWGYPYVME+FRFHMTLT R Sbjct: 121 QQLAADCVETFETFRAPMSAEDRARRRPELLTPRQRAHLDRWGYPYVMEDFRFHMTLTCR 180 Query: 178 LSDERRGPIVAQLRERFAAIELATLAIDRIALLKQADGASRFRIIGSWQLRAS 230 LSDERR PI+A L++RFA ++L LAIDRIAL +Q+ SRF I+GSW + AS Sbjct: 181 LSDERRPPILAMLKDRFAGLDLTELAIDRIALFRQSGSGSRFSIVGSWPIAAS 233 >ref|YP_570939.1| hypothetical protein RPD_3817 [Rhodopseudomonas palustris BisB5] gb|ABE41038.1| protein of unknown function DUF1045 [Rhodopseudomonas palustris BisB5] Length = 234 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 141/231 (61%), Positives = 169/231 (73%), Gaps = 3/231 (1%) Query: 1 MASTPRYAIYYAPSPDSALHRFGSTLLGYDAVSGDDLPFPDGVT---PDWREVTEDPRKY 57 M+ PRYAIY+ P P SAL RFG+TLLGYD +G +L FPD + PDW E+T DPRKY Sbjct: 1 MSRFPRYAIYFLPPPGSALDRFGATLLGYDVFAGAELSFPDEMVRAVPDWAEITGDPRKY 60 Query: 58 GFHATLKAPTALAAGRSEAELLDACAAFAGRARRIPVIEPVVDAISGFIAVIPAGRSDEL 117 GFHAT+KAP ALAAG +EAELL ACA FA R IP+I PV+ +I FIA++P+ S+EL Sbjct: 61 GFHATMKAPMALAAGHNEAELLWACATFAETPRAIPIIAPVIQSIGSFIALVPSSPSEEL 120 Query: 118 QQLAADCVAEFDAFRAPLTAADRARRKPERLTARQCDYLDRWGYPYVMEEFRFHMTLTGR 177 QLAADCV FD FRAPLT DRARRKP LT+RQ +YLD WGYPYV+EEFRFHMTLTG Sbjct: 121 LQLAADCVRSFDPFRAPLTPEDRARRKPALLTSRQVEYLDDWGYPYVIEEFRFHMTLTGS 180 Query: 178 LSDERRGPIVAQLRERFAAIELATLAIDRIALLKQADGASRFRIIGSWQLR 228 L R G ++ LR +F A+ L T+AIDRIA+ +Q +F IG +QLR Sbjct: 181 LDRARHGELLGVLRAQFDALGLETIAIDRIAVCRQDSATGKFHSIGQFQLR 231 >ref|YP_004107123.1| phosphonate metabolism protein [Rhodopseudomonas palustris DX-1] gb|ADU42390.1| phosphonate metabolism protein [Rhodopseudomonas palustris DX-1] Length = 234 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 141/232 (60%), Positives = 172/232 (74%), Gaps = 2/232 (0%) Query: 1 MASTPRYAIYYAPSPDSALHRFGSTLLGYDAVSGDDLPF--PDGVTPDWREVTEDPRKYG 58 M++ PRYAIYY P+ SAL +FG+ +LGYD VSG+D+PF P V DWR+VT DPR YG Sbjct: 1 MSNFPRYAIYYLPAAGSALAQFGAAMLGYDVVSGEDVPFAAPTAVIADWRDVTADPRGYG 60 Query: 59 FHATLKAPTALAAGRSEAELLDACAAFAGRARRIPVIEPVVDAISGFIAVIPAGRSDELQ 118 FHATLKAP L GRSE+ELL ACA FA R IP I PV+ I GFIA++P S+ LQ Sbjct: 61 FHATLKAPFGLIGGRSESELLWACATFAETPRAIPQIGPVIRPIGGFIALVPEAPSESLQ 120 Query: 119 QLAADCVAEFDAFRAPLTAADRARRKPERLTARQCDYLDRWGYPYVMEEFRFHMTLTGRL 178 QLAADCV +FD FRAPL+A DRARRKPERLT Q YLDRWGYPYVM+EFRFHMTLTG L Sbjct: 121 QLAADCVRDFDEFRAPLSAEDRARRKPERLTPEQVGYLDRWGYPYVMDEFRFHMTLTGSL 180 Query: 179 SDERRGPIVAQLRERFAAIELATLAIDRIALLKQADGASRFRIIGSWQLRAS 230 R ++A LRE+FAA + +AI+RIA+L+Q +RF+ I ++LR++ Sbjct: 181 DPARHDELLALLREQFAATGIDRIAINRIAVLRQDARGARFKSIAQFELRSA 232