BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0003.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEA83542.1| cytochrome C6 [Pseudomonas stutzeri DSM 4166]          135   3e-30
ref|YP_553780.1| putative cytochrome C6 [Burkholderia xenovorans...   122   1e-26
ref|YP_001172138.1| cytochrome C6 [Pseudomonas stutzeri A1501] >...   121   3e-26
ref|YP_002300076.1| cytochrome C6, putative [Rhodospirillum cent...   121   4e-26
ref|ZP_08314579.1| Alcohol dehydrogenase cytochrome c subunit [G...   120   6e-26

>gb|AEA83542.1| cytochrome C6 [Pseudomonas stutzeri DSM 4166]
          Length = 136

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 85/124 (68%)

Query: 8   VAAALALLSATAALGQDSGVGKRTFSSGYRFVEMTGEELFANVCQGCHMPDATGATGAGT 67
           + +A++LL+   A    S      FS G  F E TGE+LF  +CQGCHM D  GA GAG 
Sbjct: 8   LVSAISLLAVAVAATPASAANPPPFSKGETFEETTGEDLFNGICQGCHMEDGQGAIGAGA 67

Query: 68  YPSLAGNKNLEAGSYPVFLVINGRRGMPAFGDMMTDGQIAAVVNYLRTHFSNNYEDAVTT 127
           YP+L GN  + + +YP+++V+NG+ GMP+F D ++D QIA VVNY+RTHF NN+ DAV+ 
Sbjct: 68  YPALKGNPRVASAAYPIYMVVNGQGGMPSFKDYLSDQQIAEVVNYVRTHFDNNFSDAVSV 127

Query: 128 KDVQ 131
           +DV+
Sbjct: 128 EDVR 131


>ref|YP_553780.1| putative cytochrome C6 [Burkholderia xenovorans LB400]
 gb|ABE34430.1| Putative Cytochrome C6 [Burkholderia xenovorans LB400]
          Length = 143

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 68/104 (65%)

Query: 31  TFSSGYRFVEMTGEELFANVCQGCHMPDATGATGAGTYPSLAGNKNLEAGSYPVFLVING 90
           T S GYRF E +GE L+   C GCHMPD  GA GAG YP LA N  +EA  Y +  +++G
Sbjct: 40  TISPGYRFTEQSGEALYNASCAGCHMPDGKGAQGAGHYPPLADNPAVEAAPYVIVNILHG 99

Query: 91  RRGMPAFGDMMTDGQIAAVVNYLRTHFSNNYEDAVTTKDVQDAR 134
           R+ MP+FGD M D Q+AAVVNY RTHF N +  +VT   V+  R
Sbjct: 100 RKAMPSFGDAMNDDQVAAVVNYTRTHFGNRFAGSVTPSQVRSLR 143


>ref|YP_001172138.1| cytochrome C6 [Pseudomonas stutzeri A1501]
 ref|YP_004713889.1| cytochrome C6 [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
 gb|ABP79296.1| cytochrome C6 [Pseudomonas stutzeri A1501]
 gb|AEJ04800.1| cytochrome C6 [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
          Length = 136

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 84/124 (67%)

Query: 8   VAAALALLSATAALGQDSGVGKRTFSSGYRFVEMTGEELFANVCQGCHMPDATGATGAGT 67
           + +A++LL+   A    S      FS G  F E TGE+LF  +CQGCHM    GA GAG 
Sbjct: 8   LVSAISLLAVAVAATPASAANPPPFSKGETFEETTGEDLFNGICQGCHMEGGQGAIGAGA 67

Query: 68  YPSLAGNKNLEAGSYPVFLVINGRRGMPAFGDMMTDGQIAAVVNYLRTHFSNNYEDAVTT 127
           YP+L GN  + + +YP+++V+NG+ GMP+F D ++D QIA VVNY+RTHF NN+ DAV+ 
Sbjct: 68  YPALKGNPRVASAAYPIYMVVNGQGGMPSFKDYLSDQQIAEVVNYVRTHFDNNFSDAVSV 127

Query: 128 KDVQ 131
           +DV+
Sbjct: 128 EDVR 131


>ref|YP_002300076.1| cytochrome C6, putative [Rhodospirillum centenum SW]
 gb|ACJ01264.1| cytochrome C6, putative [Rhodospirillum centenum SW]
          Length = 150

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 1/116 (0%)

Query: 20  ALGQDSGVGKRTFSSGYRFVEMTGEELFANVCQGCHMPDATGATGAGTYPSLAGNKNLEA 79
           A  Q + V    F++  RF    G EL+  +CQGCHMP   GA+GAG YP+LA N NLE 
Sbjct: 32  AAAQSTDVQSSAFAAPDRFAYSDGGELYRAICQGCHMPTGEGASGAGAYPALAANPNLEV 91

Query: 80  GSYPVFLVINGRRGMPAFGDMMTDGQIAAVVNYLRTHFSNNYEDAVTTKDVQDARR 135
            +YPV +V+ GR+ MP+F   ++D QI+AVV Y+RTHF N + D V  ++V  AR+
Sbjct: 92  AAYPVSMVVGGRKAMPSF-SFLSDAQISAVVGYVRTHFGNQFPDPVPVEEVAAARQ 146


>ref|ZP_08314579.1| Alcohol dehydrogenase cytochrome c subunit [Gluconacetobacter sp.
           SXCC-1]
 gb|EGG78811.1| Alcohol dehydrogenase cytochrome c subunit [Gluconacetobacter sp.
           SXCC-1]
          Length = 141

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 88/140 (62%), Gaps = 13/140 (9%)

Query: 1   MMRTAT--SVAAALALLSATAALGQDSG---VGKRTFSSGYRFVEMTGEELFANVCQGCH 55
           MMR     SV A+L LL+++     DS    VG+    +       TGE+++ +VCQGCH
Sbjct: 1   MMRKILFLSVLASLPLLASSHPARADSASAVVGEVQPLN-------TGEDVYHHVCQGCH 53

Query: 56  MPDATGATGAGT-YPSLAGNKNLEAGSYPVFLVINGRRGMPAFGDMMTDGQIAAVVNYLR 114
           MPD  GATGAG  +P+ AGN  L++ +YPV++++NG  GMP F   + D QIA VVNY+R
Sbjct: 54  MPDGKGATGAGAQFPAFAGNAKLQSSAYPVYVIMNGYGGMPWFSGTLKDAQIANVVNYIR 113

Query: 115 THFSNNYEDAVTTKDVQDAR 134
           THF N+Y DA+T  DV   R
Sbjct: 114 THFGNHYTDAITPADVAAQR 133