BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0253.0007.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_780391.1| cytochrome c, class II [Rhodopseudomonas palust... 189 8e-47 ref|YP_485234.1| cytochrome c, class II [Rhodopseudomonas palust... 187 4e-46 ref|YP_568763.1| cytochrome c, class II [Rhodopseudomonas palust... 186 1e-45 ref|YP_531321.1| cytochrome c, class II [Rhodopseudomonas palust... 185 2e-45 ref|NP_949310.1| class II cytochrome c [Rhodopseudomonas palustr... 176 9e-43 >ref|YP_780391.1| cytochrome c, class II [Rhodopseudomonas palustris BisA53] gb|ABJ05411.1| cytochrome c, class II [Rhodopseudomonas palustris BisA53] Length = 149 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 92/147 (62%), Positives = 116/147 (78%), Gaps = 1/147 (0%) Query: 3 MKRIVVVAAMLALSAGAVVADQNQVKKTQAMMKDNGKN-AGALAAMLKGEKPYDQATVNA 61 M R +VV L L A VVA Q+ V +TQ +MK NGKN G L+AM+KGE+PY+QA V+A Sbjct: 1 MLRSIVVVGSLVLGASVVVAQQDLVNQTQTLMKANGKNLGGVLSAMVKGERPYEQAAVDA 60 Query: 62 ALAQFEDTAKQLPTLFPESMKGVKLDGDYAPSPKIWEDKAGFAQQAASFAKAVADAKGKI 121 ALAQ +DTAK+LPTLFPES+KG+K DGDY SPKIWE++A F + ASF KAVA+AKGKI Sbjct: 61 ALAQLDDTAKKLPTLFPESVKGLKADGDYYSSPKIWENRAEFDAKIASFGKAVAEAKGKI 120 Query: 122 KDVDTLKAELGLIGKQCGGCHETYRLK 148 KD+D+LKA + IGK+C GCHE++R+K Sbjct: 121 KDLDSLKATVPAIGKECSGCHESFRVK 147 >ref|YP_485234.1| cytochrome c, class II [Rhodopseudomonas palustris HaA2] gb|ABD06323.1| Cytochrome c, class II [Rhodopseudomonas palustris HaA2] Length = 149 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 90/149 (60%), Positives = 114/149 (76%), Gaps = 1/149 (0%) Query: 3 MKRIVVVAAMLALSAGAVVADQNQVKKTQAMMKDNGKNAGALAAMLKGEKPYDQATVNAA 62 M R VVVA L LS AVVA Q+ V +TQ +MKDNG+N AL+AM+KG+KPYDQATV+AA Sbjct: 1 MLRAVVVAGALLLSVNAVVAQQDLVDRTQKLMKDNGRNVMALSAMVKGDKPYDQATVDAA 60 Query: 63 LAQFEDTAKQLPTLFPESMKGVK-LDGDYAPSPKIWEDKAGFAQQAASFAKAVADAKGKI 121 L QF++TAK++P LFPES+KG+K D Y+ SPKIW+++A F + A+FAKAV+DAK + Sbjct: 61 LKQFDETAKEMPKLFPESVKGLKAFDSQYSSSPKIWQERAKFDAEIATFAKAVSDAKSSV 120 Query: 122 KDVDTLKAELGLIGKQCGGCHETYRLKKG 150 KD TLKA IGK CG CHE++RLK G Sbjct: 121 KDASTLKASFPAIGKSCGSCHESFRLKDG 149 >ref|YP_568763.1| cytochrome c, class II [Rhodopseudomonas palustris BisB5] gb|ABE38862.1| cytochrome c, class II [Rhodopseudomonas palustris BisB5] Length = 149 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/149 (63%), Positives = 112/149 (75%), Gaps = 1/149 (0%) Query: 3 MKRIVVVAAMLALSAGAVVADQNQVKKTQAMMKDNGKNAGALAAMLKGEKPYDQATVNAA 62 M R VVVA L LS AVVA Q+ V KTQ +MKDNG+NA L AM KG+KPYDQA V+AA Sbjct: 1 MLRTVVVAGALLLSVSAVVAQQDIVDKTQKLMKDNGRNAMLLGAMAKGDKPYDQAAVDAA 60 Query: 63 LAQFEDTAKQLPTLFPESMKGVK-LDGDYAPSPKIWEDKAGFAQQAASFAKAVADAKGKI 121 L QF++TAK+LP LFP S+KG+K D Y+ SPKIW+++A F + A FAKAV A+GKI Sbjct: 61 LKQFDETAKELPKLFPASVKGLKAFDSKYSSSPKIWDERAKFDAEIADFAKAVNAAQGKI 120 Query: 122 KDVDTLKAELGLIGKQCGGCHETYRLKKG 150 KDVDTLKA IGKQCG CHET+RLK G Sbjct: 121 KDVDTLKASFQPIGKQCGSCHETFRLKDG 149 >ref|YP_531321.1| cytochrome c, class II [Rhodopseudomonas palustris BisB18] gb|ABD87002.1| cytochrome c, class II [Rhodopseudomonas palustris BisB18] Length = 150 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/148 (64%), Positives = 109/148 (73%), Gaps = 2/148 (1%) Query: 3 MKRIVVVAAMLALSAGAVVADQNQVKKTQAMMKDNGKN-AGALAAMLKGEKPYDQATVNA 61 M R +V L L A VVA Q+ V +TQ +MK NGKN A LA + KGEKPYDQA VNA Sbjct: 1 MLRTAIVIGSLVLGASVVVAQQDLVNQTQMLMKGNGKNLATVLAPIAKGEKPYDQAAVNA 60 Query: 62 ALAQFEDTAKQLPTLFPESMKGVK-LDGDYAPSPKIWEDKAGFAQQAASFAKAVADAKGK 120 ALAQFEDTAK+LPTLFP S+KG+K D DY+ SPKIW+ +A F ASF KAVADAK K Sbjct: 61 ALAQFEDTAKKLPTLFPASVKGLKPADSDYSSSPKIWDSRADFDAHIASFTKAVADAKAK 120 Query: 121 IKDVDTLKAELGLIGKQCGGCHETYRLK 148 IKDVDTLK + IGK+C GCHET+RLK Sbjct: 121 IKDVDTLKVSVQAIGKECSGCHETFRLK 148 >ref|NP_949310.1| class II cytochrome c [Rhodopseudomonas palustris CGA009] ref|YP_001993467.1| cytochrome C prime [Rhodopseudomonas palustris TIE-1] sp|P00150.2|C556_RHOPA RecName: Full=Cytochrome c-556; AltName: Full=Cytochrome c556; Flags: Precursor gb|AAM16163.1|AF498585_1 cytochrome c556 precursor [Rhodopseudomonas palustris] emb|CAE29414.1| cytochrome c556 [Rhodopseudomonas palustris CGA009] gb|ACF02992.1| cytochrome c prime [Rhodopseudomonas palustris TIE-1] Length = 149 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 90/149 (60%), Positives = 110/149 (73%), Gaps = 1/149 (0%) Query: 3 MKRIVVVAAMLALSAGAVVADQNQVKKTQAMMKDNGKNAGALAAMLKGEKPYDQATVNAA 62 M R V+VA L L+A AV+A Q+ V KTQ +MKDNG+N L A+ KGEKPYDQA V+AA Sbjct: 1 MLRTVIVAGALVLTASAVMAQQDLVDKTQKLMKDNGRNMMVLGAIAKGEKPYDQAAVDAA 60 Query: 63 LAQFEDTAKQLPTLFPESMKGVK-LDGDYAPSPKIWEDKAGFAQQAASFAKAVADAKGKI 121 L QF++TAK LP LFP+S+KG+K D Y+ SPKIW ++A F + A FAKAV AKGKI Sbjct: 61 LKQFDETAKDLPKLFPDSVKGLKPFDSKYSSSPKIWAERAKFDTEIADFAKAVDGAKGKI 120 Query: 122 KDVDTLKAELGLIGKQCGGCHETYRLKKG 150 KDVDTLKA + IGK CG CHE +R K+G Sbjct: 121 KDVDTLKAAMQPIGKACGNCHENFRDKEG 149