BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0252.0005.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236707.1| CRP/FNR family transcriptional regulator [Br... 296 9e-79 ref|YP_001208808.1| CRP/FNR family transcriptional regulator [Br... 295 4e-78 ref|NP_767036.1| hypothetical protein blr0396 [Bradyrhizobium ja... 291 3e-77 ref|NP_767035.1| hypothetical protein blr0395 [Bradyrhizobium ja... 188 4e-46 ref|YP_001992873.1| Crp/Fnr family transcriptional regulator [Rh... 169 3e-40 >ref|YP_001236707.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ32801.1| Putative transcriptional regulator, Crp/Fnr family [Bradyrhizobium sp. BTAi1] Length = 238 Score = 296 bits (759), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 150/214 (70%), Positives = 169/214 (78%), Gaps = 2/214 (0%) Query: 1 LDKVSRPPNGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVV 60 +D R PNGFL+SLS DFELIRP+LRTVDL DSVL E E L R Y PH+GVISLVV Sbjct: 1 MDLGLRSPNGFLSSLSDEDFELIRPYLRTVDLVQDSVLAEVGEKLSRIYFPHRGVISLVV 60 Query: 61 KLARGERVQVAMVGRDSIYDAFAPL--VEGPVLNNAAVLVPGIASTVELEPLRAAAGQSP 118 LARGERVQVAM+GRDS + + + L E VLN AAVLVPG AS V++E +R AA QS Sbjct: 61 NLARGERVQVAMIGRDSFFGSMSLLGGAESLVLNTAAVLVPGAASVVDIERVRNAAEQSG 120 Query: 119 TLRARLIRHGLAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMI 178 T RA+++RH LAVY Q QQTAGCNAAHTVESRLARCLL T DLSG NK+ +TQE++AQMI Sbjct: 121 TFRAQMLRHALAVYLQSQQTAGCNAAHTVESRLARCLLQTHDLSGGNKLYITQESLAQMI 180 Query: 179 GARRNSVSLVAHTLQQANFIHYSRGHIEITTPRG 212 GARRNSVSLVA TLQQA+FIHYSRGHIEI G Sbjct: 181 GARRNSVSLVASTLQQADFIHYSRGHIEIIDLEG 214 >ref|YP_001208808.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL80593.1| Putative transcriptional regulator, Crp/Fnr family [Bradyrhizobium sp. ORS 278] Length = 240 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 148/214 (69%), Positives = 171/214 (79%), Gaps = 2/214 (0%) Query: 1 LDKVSRPPNGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVV 60 +D R PNGFL+SLS DFEL+RP+LRTVDL DSVL E E L R Y PH+GVISLVV Sbjct: 1 MDPSLRSPNGFLSSLSDDDFELVRPYLRTVDLVQDSVLAEAGEKLPRIYFPHRGVISLVV 60 Query: 61 KLARGERVQVAMVGRDSIYDAFAPLVEGP--VLNNAAVLVPGIASTVELEPLRAAAGQSP 118 LARGERVQVAM+GRDS + + + L G VLN+AAVLVPG AS V+++ +RAAA QS Sbjct: 61 NLARGERVQVAMIGRDSFFGSMSLLAGGDPIVLNSAAVLVPGSASIVDIDRVRAAAEQSS 120 Query: 119 TLRARLIRHGLAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMI 178 T R++++RH LAVY Q QQTAGCNAAHTVESRLARCLL T DLSG NK+ +TQE++AQMI Sbjct: 121 TFRSQMLRHALAVYVQSQQTAGCNAAHTVESRLARCLLQTHDLSGGNKLYITQESLAQMI 180 Query: 179 GARRNSVSLVAHTLQQANFIHYSRGHIEITTPRG 212 GARRNSVSLVA TLQQA+FIHYSRGHIEI G Sbjct: 181 GARRNSVSLVASTLQQADFIHYSRGHIEIMDLEG 214 >ref|NP_767036.1| hypothetical protein blr0396 [Bradyrhizobium japonicum USDA 110] dbj|BAC45661.1| blr0396 [Bradyrhizobium japonicum USDA 110] Length = 260 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 143/212 (67%), Positives = 172/212 (81%) Query: 1 LDKVSRPPNGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVV 60 L+ + RP NGFL++L+A D+ELIRP+L TV+L ++VLVET E LKR + PH+GVISLVV Sbjct: 26 LETMVRPSNGFLSALTADDYELIRPYLHTVELPHEAVLVETGETLKRAFFPHRGVISLVV 85 Query: 61 KLARGERVQVAMVGRDSIYDAFAPLVEGPVLNNAAVLVPGIASTVELEPLRAAAGQSPTL 120 LA+GE VQVAM+GRDS+ + + + LN A VLVPG+AS ++L+ LR AA QS TL Sbjct: 86 NLAKGEHVQVAMIGRDSLLGTLSTMGDTCALNTAIVLVPGVASVMDLDRLRIAADQSGTL 145 Query: 121 RARLIRHGLAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMIGA 180 R L RHGLAVYAQ+QQTAGCNAAH VESRL+RCLLHT DLSG +++LTQEAMAQMIGA Sbjct: 146 RTLLTRHGLAVYAQVQQTAGCNAAHPVESRLSRCLLHTHDLSGDYRLLLTQEAMAQMIGA 205 Query: 181 RRNSVSLVAHTLQQANFIHYSRGHIEITTPRG 212 RRNSVSLVA+TLQQANFIHYSRGHI+I G Sbjct: 206 RRNSVSLVANTLQQANFIHYSRGHIQILNLDG 237 >ref|NP_767035.1| hypothetical protein blr0395 [Bradyrhizobium japonicum USDA 110] dbj|BAC45660.1| blr0395 [Bradyrhizobium japonicum USDA 110] Length = 236 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 97/205 (47%), Positives = 130/205 (63%) Query: 7 PPNGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVVKLARGE 66 PPN L L A+DF+L+RPHL TV++ +SVL E L+ Y PH G IS+ + L+ G+ Sbjct: 7 PPNQLLQMLDAADFDLLRPHLATVEMVRESVLGEAGAALRYVYFPHGGSISITLGLSEGQ 66 Query: 67 RVQVAMVGRDSIYDAFAPLVEGPVLNNAAVLVPGIASTVELEPLRAAAGQSPTLRARLIR 126 +++AM+GRDS+ + A L +G +A VL PG AS +E+ R A S R ++R Sbjct: 67 MIEIAMLGRDSVVGSGAALADGIAPADAVVLFPGTASMLEIAAFRTIAAASVPFRNLMVR 126 Query: 127 HGLAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMIGARRNSVS 186 H + A QQ+ CN H VE+RLAR LL RDLS S + LTQE +AQM+G RRN++S Sbjct: 127 HEQVLLAHAQQSLLCNTLHPVEARLARWLLRARDLSDSAILPLTQETLAQMMGVRRNAIS 186 Query: 187 LVAHTLQQANFIHYSRGHIEITTPR 211 LVAH LQ+A I Y+RG IEI R Sbjct: 187 LVAHALQRAGIIRYTRGQIEIIDLR 211 >ref|YP_001992873.1| Crp/Fnr family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF02398.1| putative transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris TIE-1] Length = 254 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/208 (44%), Positives = 128/208 (61%), Gaps = 1/208 (0%) Query: 5 SRPPNGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVVKLAR 64 S+ N LA+L A+DFEL+RPHLRT+DL VLVE L++ PH G+IS V+ L + Sbjct: 4 SQSANDLLAALPAADFELLRPHLRTIDLKFGQVLVEAGAPLEQAIFPHGGIISSVIGLGK 63 Query: 65 GERVQVAMVGRDSIYDAFAPLVEGPVLNNAAVLVPGIASTVELEPLRAAAGQSPTLRARL 124 E +++A +GRD A A E A V P AS +E+ R A S TLR+ L Sbjct: 64 DEAIELAAIGRDGAVGAEAAH-ETVAAVGAVVRYPTTASAIEVMHFRYAVDHSATLRSLL 122 Query: 125 IRHGLAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMIGARRNS 184 +R+ + ++ A CNAAH+ E+RL R LL +RD++GS+ + L Q+ MAQM+G +RN+ Sbjct: 123 LRYQWIRAVRAERVAACNAAHSAEARLCRRLLQSRDMAGSDCMQLGQDLMAQMLGVKRNT 182 Query: 185 VSLVAHTLQQANFIHYSRGHIEITTPRG 212 +SL+AH LQQ I YSRG + IT G Sbjct: 183 ISLIAHALQQQGLIRYSRGRLAITDVDG 210