BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0252.0003.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767039.1| transcriptional regulator [Bradyrhizobium japon... 178 4e-43 ref|YP_001236702.1| LuxR family transcriptional regulator [Brady... 152 3e-35 ref|YP_001208813.1| LuxR family transcriptional regulator [Brady... 150 1e-34 ref|YP_533932.1| LuxR family transcriptional regulator [Rhodopse... 110 7e-23 ref|YP_533649.1| two component LuxR family transcriptional regul... 77 1e-12 >ref|NP_767039.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45664.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 207 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/157 (61%), Positives = 116/157 (73%), Gaps = 4/157 (2%) Query: 37 RQFNGPVTALLLYMNELKQHSQQFAHAPGNGVYLRQVIENALEQTERVSAMLKQISDLYP 96 R+ NGP+TALLLYM E+K HS Q A A G+ YL++V+ENAL QTERV ++KQ++ + Sbjct: 49 RELNGPLTALLLYMGEIKHHSDQLAPATGDRAYLQRVVENALTQTERVCGLVKQLAGPHK 108 Query: 97 NAVPAADLKPPSDDKPAASRSPDVMFAPE----AGRKPLTKREREVLSLISDGYSNKQGA 152 P ++ K A + P + +PE +G+K LTKREREVL LIS+GYSNKQGA Sbjct: 109 VDSPIPPRIEDAEAKIARAPQPQRVPSPELLGLSGQKRLTKREREVLRLISEGYSNKQGA 168 Query: 153 LRMNISPRTFESHRAEAMRKLGARNTADLVRKALLHS 189 LRM ISPRTFESHRAEAMRKLGARNTADLVR ALLHS Sbjct: 169 LRMQISPRTFESHRAEAMRKLGARNTADLVRAALLHS 205 >ref|YP_001236702.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ32796.1| putative Transcriptional regulatory protein, luxR family [Bradyrhizobium sp. BTAi1] Length = 206 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/184 (48%), Positives = 112/184 (60%), Gaps = 15/184 (8%) Query: 11 PPEPQPLETQGVAAPRPQADAGAAIVRQFNGPVTALLLYMNELKQHSQQFAHAPGNGVYL 70 PP + L A P +D A+ Q NG +TAL+LYM E+KQ S A PG+ ++ Sbjct: 29 PPRAEALGAPVTAQAEP-SDGLVALTGQLNGSLTALMLYMGEIKQRSDDIARTPGDRRHV 87 Query: 71 RQVIENALEQTERVSAMLKQISDLYPNAVPAADLKPPSDD----KPAASRSPDVMFAPEA 126 + +++NAL QTER+ ++ Q++ P A P D SR P Sbjct: 88 QMIVDNALMQTERICTLVSQMAGAQPQCGSAPRSLPGQDSVVIGTATTSRHP-------- 139 Query: 127 GR--KPLTKREREVLSLISDGYSNKQGALRMNISPRTFESHRAEAMRKLGARNTADLVRK 184 GR K LT REREVL LIS G+SNK+GALRM ISPRTFESHRAEAMRKLGARNTA+LVR Sbjct: 140 GRTNKSLTPREREVLELISAGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELVRA 199 Query: 185 ALLH 188 ALL+ Sbjct: 200 ALLN 203 >ref|YP_001208813.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL80598.1| putative Transcriptional regulatory protein, luxR family [Bradyrhizobium sp. ORS 278] Length = 199 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/167 (49%), Positives = 108/167 (64%), Gaps = 5/167 (2%) Query: 22 VAAPRPQADAGAAIVRQFNGPVTALLLYMNELKQHSQQFAHAPGNGVYLRQVIENALEQT 81 +AA R ++ Q NG +TAL+LYM E+KQ S + A +PG +++ V++NAL QT Sbjct: 34 LAAERSDHQDALSLAHQLNGSLTALMLYMREIKQRSDEIARSPGERRHVQMVVDNALLQT 93 Query: 82 ERVSAMLKQISDLYPNAVPAADLKPPSDDKPAASRSPDVMFAPEAGR-KPLTKREREVLS 140 ERV A++ +++ P + + + A P G K LT REREVL Sbjct: 94 ERVCALVGRMAGAQARLGPVSSAVTAREQEAA----PVHALVRSGGSSKSLTPREREVLK 149 Query: 141 LISDGYSNKQGALRMNISPRTFESHRAEAMRKLGARNTADLVRKALL 187 LIS+G+SNK+GALRM ISPRTFESHRAEAMRKLGARNTA+LVR ALL Sbjct: 150 LISEGHSNKEGALRMGISPRTFESHRAEAMRKLGARNTAELVRAALL 196 >ref|YP_533932.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD89613.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 183 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 18/164 (10%) Query: 33 AAIVRQFNGPVTALLLYMNELKQHSQQF-AHAPGNGVYLRQVIENALEQTERVSAMLKQI 91 AAI Q GP+TALL +M +LK + AP + ++++AL +T+RV A+ + Sbjct: 24 AAIAEQLVGPLTALLQFMQDLKTLTGADPGIAPAD-----TLVDDALRETQRVCAI---V 75 Query: 92 SDLYPNAVPAAD--LKPPSDDKPAASRSPDVMFAPE-------AGRKPLTKREREVLSLI 142 L VP AD L P D +A + + A E + R LT REREVL LI Sbjct: 76 EGLGVRPVPPADATLVPGQDQGASAWWARCIDAAGETPTATGRSIRHRLTPREREVLKLI 135 Query: 143 SDGYSNKQGALRMNISPRTFESHRAEAMRKLGARNTADLVRKAL 186 S G +NK+GAL+++ISPRT+ESHRA+ MRKLGARN ADL+RK L Sbjct: 136 SGGSTNKEGALQLSISPRTYESHRAQIMRKLGARNAADLLRKVL 179 >ref|YP_533649.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD89330.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 209 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 69/139 (49%), Gaps = 27/139 (19%) Query: 48 LYMNELKQHSQQFAHAPGNGVYLRQVIENALEQTERVSAMLKQISDLYPNAVPAADLKPP 107 + +N +K + F P G + +E A+E R ++ + L P K P Sbjct: 92 MAVNAIKNGALDFIEKPFRGPEIVTRVEEAIEAFTR-----RRAAGLVP--------KVP 138 Query: 108 SDDKPAASRSPDVMFAPEAGRKPLTKREREVLSLISDGYSNKQGALRMNISPRTFESHRA 167 S + P GR+PLT REREVL L S G +NK+ ++ ISPRT E HRA Sbjct: 139 SLNFP--------------GREPLTMREREVLELFSSGNTNKEAGRQLGISPRTIEYHRA 184 Query: 168 EAMRKLGARNTADLVRKAL 186 M+KLGA+N DLVR + Sbjct: 185 NIMKKLGAKNATDLVRIVM 203