BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0252.0002.p         (174 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208816.1| hypothetical protein BRADO7015 [Bradyrhizobi...   207   6e-52
ref|NP_767041.1| hypothetical protein blr0401 [Bradyrhizobium ja...   200   7e-50
ref|YP_001811069.1| hypothetical protein BamMC406_4397 [Burkhold...   192   2e-47
ref|YP_372108.1| hypothetical protein Bcep18194_B1350 [Burkholde...   192   2e-47
ref|ZP_04941633.1| conserved hypothetical protein [Burkholderia ...   192   2e-47

>ref|YP_001208816.1| hypothetical protein BRADO7015 [Bradyrhizobium sp. ORS 278]
 emb|CAL80601.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 127

 Score =  207 bits (526), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 107/125 (85%), Gaps = 1/125 (0%)

Query: 49  LAAALLLGAGARAQTPP-TSDATPTPDNAVMLTIFFKHDQSRPLGELNAQLERQGFYKAF 107
           +  A L  +G++AQT P  + A PTPDNAV+LT+F KHDQSRPL ELNAQLERQGFYKAF
Sbjct: 1   MGCAALTSSGSKAQTAPEATTAAPTPDNAVLLTVFLKHDQSRPLSELNAQLERQGFYKAF 60

Query: 108 PPEGVEVVSWYVMMGIGQVVTLRLPASRLREVNRVIENSAWGAYHTEFYPTYDYKAVGIG 167
           PP G+EVVSWYVMMG+GQVVTLRLPASRLRE+NR+ E +AWG Y TEFYPTYDYKA+G+ 
Sbjct: 61  PPPGIEVVSWYVMMGVGQVVTLRLPASRLREINRIFETTAWGVYRTEFYPTYDYKAIGLA 120

Query: 168 NHEKA 172
           NHEKA
Sbjct: 121 NHEKA 125


>ref|NP_767041.1| hypothetical protein blr0401 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45666.1| blr0401 [Bradyrhizobium japonicum USDA 110]
          Length = 171

 Score =  200 bits (508), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 61  AQT-PPTSDATPTPDNAVMLTIFFKHDQSRPLGELNAQLERQGFYKAFPPEGVEVVSWYV 119
           AQT PP  +A PT DNAV+LT+FFKHDQSRPL ELNAQL+RQGF+KAFPP G+EVVSWYV
Sbjct: 56  AQTSPPQGNAAPTADNAVLLTVFFKHDQSRPLNELNAQLDRQGFHKAFPPPGIEVVSWYV 115

Query: 120 MMGIGQVVTLRLPASRLREVNRVIENSAWGAYHTEFYPTYDYKAVGIGNHEKA 172
           MMGIGQV+TLRLPASRLREVNRVIE++AWG+Y TEFYPTYDYKAVG+  H+KA
Sbjct: 116 MMGIGQVITLRLPASRLREVNRVIEDTAWGSYRTEFYPTYDYKAVGMAQHDKA 168


>ref|YP_001811069.1| hypothetical protein BamMC406_4397 [Burkholderia ambifaria MC40-6]
 gb|ACB66853.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 144

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 99/117 (84%)

Query: 57  AGARAQTPPTSDATPTPDNAVMLTIFFKHDQSRPLGELNAQLERQGFYKAFPPEGVEVVS 116
           A A+  T PT  A  TPDNAV+LT+F KHDQSRPL ELNAQL +QGFYKAFPP GVEVVS
Sbjct: 28  AAAQTSTVPTGTAAATPDNAVLLTVFLKHDQSRPLAELNAQLAKQGFYKAFPPPGVEVVS 87

Query: 117 WYVMMGIGQVVTLRLPASRLREVNRVIENSAWGAYHTEFYPTYDYKAVGIGNHEKAK 173
           W V MGIGQ+V LRLPASR+REVNRV+E++AWGAY TEFYPTYDYKA+G+  HE+AK
Sbjct: 88  WTVTMGIGQIVVLRLPASRVREVNRVLEDTAWGAYRTEFYPTYDYKAIGLAEHERAK 144


>ref|YP_372108.1| hypothetical protein Bcep18194_B1350 [Burkholderia sp. 383]
 gb|ABB11464.1| hypothetical protein Bcep18194_B1350 [Burkholderia sp. 383]
          Length = 144

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 98/114 (85%)

Query: 60  RAQTPPTSDATPTPDNAVMLTIFFKHDQSRPLGELNAQLERQGFYKAFPPEGVEVVSWYV 119
           +  T P + A  TPDNAV+LT+F KHDQSRPL ELNAQL +QGFYKAFPP GVEVVSW V
Sbjct: 31  QTSTVPAASAAATPDNAVLLTVFLKHDQSRPLAELNAQLAKQGFYKAFPPPGVEVVSWTV 90

Query: 120 MMGIGQVVTLRLPASRLREVNRVIENSAWGAYHTEFYPTYDYKAVGIGNHEKAK 173
            MGIGQ+V LRLPASRLREVNRV+E++AWGAY TEFYPTYDYKA+G+G HE+AK
Sbjct: 91  TMGIGQIVVLRLPASRLREVNRVLEDTAWGAYRTEFYPTYDYKAIGLGEHERAK 144


>ref|ZP_04941633.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gb|EAY64804.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 159

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 103/130 (79%), Gaps = 4/130 (3%)

Query: 48  ALAAALLLGAGARAQTP----PTSDATPTPDNAVMLTIFFKHDQSRPLGELNAQLERQGF 103
           ALAA  +    A  QT     P   A  TPDNA++LT+F KHDQSRPL ELNAQL +QGF
Sbjct: 30  ALAAVAIGSVPAVGQTSTSTVPAGSAAATPDNAILLTVFLKHDQSRPLAELNAQLAKQGF 89

Query: 104 YKAFPPEGVEVVSWYVMMGIGQVVTLRLPASRLREVNRVIENSAWGAYHTEFYPTYDYKA 163
           YKAFPP GVEVVSW V MGIGQ+V LRLPASRLREVNRV+E++AWGAY TEFYPTYDYKA
Sbjct: 90  YKAFPPPGVEVVSWTVTMGIGQIVVLRLPASRLREVNRVLEDTAWGAYRTEFYPTYDYKA 149

Query: 164 VGIGNHEKAK 173
           +G+G HE+AK
Sbjct: 150 IGLGEHERAK 159