BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0024.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_530749.1| hypothetical protein RPC_0860 [Rhodopseudomonas...   153   9e-36
ref|YP_293637.1| hypothetical protein Reut_D6482 [Ralstonia eutr...   118   3e-25
ref|YP_299471.1| hypothetical protein Reut_B5281 [Ralstonia eutr...   112   2e-23
ref|YP_004386092.1| hypothetical protein Alide2_0138 [Alicycliph...   104   4e-21
ref|YP_004124822.1| hypothetical protein Alide_0148 [Alicycliphi...   104   6e-21

>ref|YP_530749.1| hypothetical protein RPC_0860 [Rhodopseudomonas palustris BisB18]
 gb|ABD86430.1| protein of unknown function DUF35 [Rhodopseudomonas palustris
           BisB18]
          Length = 138

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 94/134 (70%)

Query: 7   KPQRPLPKIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHTIEWRETS 66
           K  RP+PK  +Y+DT+ FW GAK+GKL+LQ+C  T ++QHYPRP+S++TG   +EWRE S
Sbjct: 5   KAGRPVPKPSTYVDTQAFWDGAKQGKLVLQYCKDTGQFQHYPRPVSIFTGSRNLEWREVS 64

Query: 67  GKGTVYSWTVTRSPWPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVVIGMPVEVRWD 126
           GKGTVY+ TV R P PG + R+P   A V+L EGVR L N++    D+V IG  VEV WD
Sbjct: 65  GKGTVYACTVIRVPGPGLDGRLPLSVATVELDEGVRILGNVLGSDPDKVAIGQRVEVTWD 124

Query: 127 RLNDETVYPDFAPV 140
            L+++  YP F  V
Sbjct: 125 HLSNDVQYPAFKLV 138


>ref|YP_293637.1| hypothetical protein Reut_D6482 [Ralstonia eutropha JMP134]
 gb|AAZ65780.1| Protein of unknown function DUF35 [Ralstonia eutropha JMP134]
          Length = 146

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 74/124 (59%), Gaps = 1/124 (0%)

Query: 14  KIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHTIEWRETSGKGTVYS 73
            IG Y+DT  FW   +  +L++QFCTQT R+Q YPRP S+YTGR  + WRE SG G + S
Sbjct: 10  AIGHYMDTAAFWAATRERRLLVQFCTQTGRWQAYPRPGSVYTGRRRLAWREVSGDGVLAS 69

Query: 74  WTVTRSPWPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVVIGMPVEVRWDRLNDETV 133
           WTV R   P   A  P + A++DL EG R L  LVDC    + +G+ V V W  L D   
Sbjct: 70  WTVDRMNTPA-AADAPRMHAWIDLVEGARILSWLVDCDPARLRVGLAVRVAWISLPDGWQ 128

Query: 134 YPDF 137
           +P F
Sbjct: 129 WPAF 132


>ref|YP_299471.1| hypothetical protein Reut_B5281 [Ralstonia eutropha JMP134]
 gb|AAZ64627.1| Protein of unknown function DUF35 [Ralstonia eutropha JMP134]
          Length = 146

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 10/145 (6%)

Query: 1   MINDNIKPQRPLPKIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHT- 59
           +++D +  +R + +  S+  T+ FW   +  KL++Q+C  T +YQHYPRP S++TGR T 
Sbjct: 8   LLDDTLDVRRAI-RPSSF--TQPFWAATREKKLVIQYCRATGKYQHYPRPTSIFTGRKTD 64

Query: 60  IEWRETSGKGTVYSWTVTR---SPWPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVV 116
           IEWRE SG+G V+SWTV R     + GHE   PY+ A V L  GV  + NLV CS DEV 
Sbjct: 65  IEWREVSGRGEVFSWTVVRRGPGAFRGHE---PYVVASVTLDVGVNVIANLVHCSLDEVF 121

Query: 117 IGMPVEVRWDRLNDETVYPDFAPVR 141
           IGM V   W  ++D      F P R
Sbjct: 122 IGMKVVPYWLPIDDGMHLLMFEPER 146


>ref|YP_004386092.1| hypothetical protein Alide2_0138 [Alicycliphilus denitrificans
           K601]
 gb|AEB82576.1| protein of unknown function DUF35 [Alicycliphilus denitrificans
           K601]
          Length = 138

 Score =  104 bits (259), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 3/131 (2%)

Query: 8   PQRPLPKIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHTIEWRETSG 67
           P RPLP+      T+ +W  A RG+L +Q C    R+Q YPRP  ++     ++WR  +G
Sbjct: 5   PARPLPQPTDL--TRPYWQAAARGELHMQHCGACGRWQFYPRPFCIHCEAEALQWRPVAG 62

Query: 68  KGTVYSWTVT-RSPWPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVVIGMPVEVRWD 126
            G VY++TV  R+P P  +AR+PY+ A ++L EG R + N++D    ++ IG  VEV ++
Sbjct: 63  TGKVYTYTVNHRAPNPFMKARLPYVVAMIELDEGPRLMANVLDAQPGDMAIGRRVEVAFE 122

Query: 127 RLNDETVYPDF 137
           R++D+   P F
Sbjct: 123 RVSDDMALPQF 133


>ref|YP_004124822.1| hypothetical protein Alide_0148 [Alicycliphilus denitrificans BC]
 gb|ADU97934.1| protein of unknown function DUF35 [Alicycliphilus denitrificans BC]
          Length = 138

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 3/131 (2%)

Query: 8   PQRPLPKIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHTIEWRETSG 67
           P RPLP+      T+ +W  A RG+L +Q C    R+Q YPRP  ++     ++WR  +G
Sbjct: 5   PARPLPQPTDL--TRPYWQAAARGELHMQHCGACGRWQFYPRPFCIHCEAEALQWRPVAG 62

Query: 68  KGTVYSWTVT-RSPWPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVVIGMPVEVRWD 126
            G VY++TV  R+P P  +AR+PY+ A ++L EG R + N++D    ++ IG  VEV ++
Sbjct: 63  TGKVYTYTVNHRAPNPFMKARLPYVVAMIELDEGPRLMANVLDARPGDMAIGRRVEVAFE 122

Query: 127 RLNDETVYPDF 137
           R++D+   P F
Sbjct: 123 RVSDDMALPQF 133