BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0008.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486708.1| binding-protein dependent transport system inne... 375 e-102 ref|YP_003319755.1| binding-protein-dependent transport systems ... 226 2e-57 ref|YP_003836844.1| binding-protein-dependent transport systems ... 217 9e-55 ref|ZP_08316733.1| putative ABC transporter permease protein [Gl... 211 4e-53 ref|YP_004814678.1| ABC transporter permease [Streptomyces viola... 206 2e-51 >ref|YP_486708.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD07797.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 261 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/214 (88%), Positives = 202/214 (94%) Query: 3 RLYALVTSGMIWPHLWATLVEVLSGFVLGCAAGLIIGAMISLIPVFERLVYPYLVALQTL 62 RL +LV G IWPHLWATL E+LSGFVLG AGL++GA+ISLIPV ERL+YPYLVALQTL Sbjct: 47 RLQSLVFGGTIWPHLWATLFEILSGFVLGVLAGLVVGALISLIPVLERLIYPYLVALQTL 106 Query: 63 PKVAIAPLFIIWFGYGLTSKIVITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATKLQ 122 PKVAIAPLFIIWFGYGLTSK+VITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATK Q Sbjct: 107 PKVAIAPLFIIWFGYGLTSKVVITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATKWQ 166 Query: 123 TLMRLRIPSALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFSMDVSGVFAV 182 TL+RLRIPSALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFS+DV+GVFAV Sbjct: 167 TLVRLRIPSALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFSLDVAGVFAV 226 Query: 183 LIILSAIGLVMHGLMRYAARRYIFWIRRSDAPVM 216 LI+LSAIGL MH + RYAARRYIFWIRRSDAPV+ Sbjct: 227 LIVLSAIGLAMHAITRYAARRYIFWIRRSDAPVI 260 >ref|YP_003319755.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] gb|ACZ38933.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] Length = 279 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 106/207 (51%), Positives = 153/207 (73%) Query: 10 SGMIWPHLWATLVEVLSGFVLGCAAGLIIGAMISLIPVFERLVYPYLVALQTLPKVAIAP 69 SG + H W TL EVL GF +G AGL++G +++ + ER VYPY+VA QT+PKVA+AP Sbjct: 71 SGSLVEHTWVTLQEVLLGFAVGSVAGLVVGVIVTRFRLVERTVYPYVVAFQTVPKVALAP 130 Query: 70 LFIIWFGYGLTSKIVITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATKLQTLMRLRI 129 L + WFG+G+TSK+V TAL+ FFP+LV+VIAG S D+D++D++++ A++ Q +R Sbjct: 131 LIVTWFGFGMTSKVVTTALIAFFPLLVNVIAGLQSVDQDRIDLLRSVNASEWQIFRMVRF 190 Query: 130 PSALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFSMDVSGVFAVLIILSAI 189 PSAL IFAGL++A V +VIGAIV EFVGA+ GLGYL+ N++++VSG FAVL++LS + Sbjct: 191 PSALPFIFAGLDVAIVFSVIGAIVSEFVGARAGLGYLIQVNNYNLNVSGTFAVLVVLSVM 250 Query: 190 GLVMHGLMRYAARRYIFWIRRSDAPVM 216 GL +H ++++ RR +FW R V+ Sbjct: 251 GLTLHLVVQWVNRRVVFWQRDDRGSVV 277 >ref|YP_003836844.1| binding-protein-dependent transport systems inner membrane component [Micromonospora aurantiaca ATCC 27029] ref|YP_004084284.1| binding-protein-dependent transport systems inner membrane component [Micromonospora sp. L5] gb|ADL47268.1| binding-protein-dependent transport systems inner membrane component [Micromonospora aurantiaca ATCC 27029] gb|ADU10133.1| binding-protein-dependent transport systems inner membrane component [Micromonospora sp. L5] Length = 286 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 102/212 (48%), Positives = 148/212 (69%) Query: 1 VFRLYALVTSGMIWPHLWATLVEVLSGFVLGCAAGLIIGAMISLIPVFERLVYPYLVALQ 60 V L+ + W H W T E L GFV+G A L++G IS I + E + PY+VA Q Sbjct: 71 VESLWQQLGDDQFWGHFWVTTQEALLGFVIGVGAALVLGTFISQIKIVEATLMPYIVAFQ 130 Query: 61 TLPKVAIAPLFIIWFGYGLTSKIVITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATK 120 T+PKVA+APLF++WFG+GLTSK+V+ A++ FFP+LV+VI G + D D++ M+ FGA+K Sbjct: 131 TVPKVALAPLFVVWFGFGLTSKVVMAAVISFFPMLVNVIEGLRAADADKIQMLTVFGASK 190 Query: 121 LQTLMRLRIPSALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFSMDVSGVF 180 Q +R+PSAL IFAGL+I V A++GA+VGEF+GA+ GLGYL++ N++ D++G+F Sbjct: 191 TQIFRMVRLPSALPFIFAGLDIGIVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMF 250 Query: 181 AVLIILSAIGLVMHGLMRYAARRYIFWIRRSD 212 AVL++LS +GLV H ++R +R FW + Sbjct: 251 AVLVVLSVMGLVAHFVIRLLQKRLAFWAEDTK 282 >ref|ZP_08316733.1| putative ABC transporter permease protein [Gluconacetobacter sp. SXCC-1] gb|EGG76767.1| putative ABC transporter permease protein [Gluconacetobacter sp. SXCC-1] Length = 267 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 107/215 (49%), Positives = 151/215 (70%), Gaps = 6/215 (2%) Query: 4 LYALVTSGMIWPHLWATLVEVLSGFVLGCAAGLIIGAMISLIPVFERLVYPYLVALQTLP 63 L+ + SG++WPH T E+L+GF +G G+ +G +I E++ YPYLVA QT+P Sbjct: 53 LWLEIRSGILWPHFLVTCEEILAGFGIGAIVGIGLGVLIGQSRFLEQVFYPYLVAAQTVP 112 Query: 64 KVAIAPLFIIWFGYGLTSKIVITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATKLQT 123 KVAIAP+ +IW GYGL+SKIVITA + FFP L + I G +T ++Q++M++A AT+ Q Sbjct: 113 KVAIAPILVIWLGYGLSSKIVITATIAFFPALSNTIVGLQATPREQMEMLRACTATQWQI 172 Query: 124 LMRLRIPSALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFSMDVSGVFAVL 183 R P AL IFAGL++AAVL+VIGAIVGEFVGA+ GLGYL++ +NFS D++GVF++L Sbjct: 173 FCMARFPQALPYIFAGLDVAAVLSVIGAIVGEFVGARAGLGYLILQMNFSFDMAGVFSIL 232 Query: 184 IILSAIGLVMH---GLMRYAARRYIFWIRRSDAPV 215 ++L IG+ +H GL+R RR +FW P+ Sbjct: 233 LVLCLIGICLHLAVGLVR---RRVLFWAADQADPL 264 >ref|YP_004814678.1| ABC transporter permease [Streptomyces violaceusniger Tu 4113] gb|AEM84398.1| ABC-type transporter, integral membrane subunit [Streptomyces violaceusniger Tu 4113] Length = 269 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/200 (49%), Positives = 150/200 (75%) Query: 12 MIWPHLWATLVEVLSGFVLGCAAGLIIGAMISLIPVFERLVYPYLVALQTLPKVAIAPLF 71 + W HL T++E L GF+LG AA L++G IS + + ER PY+VA QT+PKVA+APLF Sbjct: 65 LFWGHLKVTVLESLYGFLLGVAAALVLGTAISQVRLIERTFMPYVVAFQTVPKVALAPLF 124 Query: 72 IIWFGYGLTSKIVITALVCFFPVLVSVIAGFHSTDKDQLDMMKAFGATKLQTLMRLRIPS 131 ++WFG+G+TSK+V+ A++ FFPVL++VI G S D D++ M+ FGA + Q +R+PS Sbjct: 125 VVWFGFGMTSKVVMAAVISFFPVLINVIEGLRSADADRIQMLTVFGAGRFQVFRMVRLPS 184 Query: 132 ALVLIFAGLEIAAVLAVIGAIVGEFVGAQVGLGYLVVTLNFSMDVSGVFAVLIILSAIGL 191 AL +FAGL+I V A++GA+VGEF+GA+ GLGYL++ N++ D++G+FAVL++LS +GL Sbjct: 185 ALPFLFAGLDIGIVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMFAVLVVLSVLGL 244 Query: 192 VMHGLMRYAARRYIFWIRRS 211 + H ++R+A +R +FW + Sbjct: 245 IAHFIIRFAQKRLVFWAEEN 264