BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0031.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767155.1| succinate dehydrogenase iron-sulfur subunit [Br... 518 e-145 ref|YP_001236433.1| succinate dehydrogenase iron-sulfur subunit ... 516 e-144 ref|YP_001202448.1| succinate dehydrogenase iron-sulfur subunit ... 515 e-144 ref|YP_483946.1| succinate dehydrogenase iron-sulfur subunit [Rh... 501 e-140 ref|NP_945569.1| succinate dehydrogenase iron-sulfur subunit [Rh... 499 e-139 >ref|NP_767155.1| succinate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum USDA 110] gb|AAC17943.1| succinate dehydrogenase iron-sulfur protein subunit [Bradyrhizobium japonicum] dbj|BAC45780.1| succinate dehydrogenase iron-sulfur protein subunit [Bradyrhizobium japonicum USDA 110] Length = 260 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/261 (93%), Positives = 256/261 (98%), Gaps = 1/261 (0%) Query: 1 MVEFALPKNSKISGGKTWPKPAGATETREFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL 60 MVEFALPKNSKI+GGKTWPKPAGAT+ REFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL Sbjct: 1 MVEFALPKNSKITGGKTWPKPAGATDVREFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL 60 Query: 61 DGLIWIKNHIDPTLTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDVGAGGAVKVNPLPH 120 DGLIWIKN+IDP+LTFRRSCREGVCGSCAMNIDGQNTLACT+SMHDV GAVK+NPLPH Sbjct: 61 DGLIWIKNNIDPSLTFRRSCREGVCGSCAMNIDGQNTLACTRSMHDV-KDGAVKINPLPH 119 Query: 121 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEWRQSHEDREKLDGLYECILCACCST 180 QPVVKDLVPDLTNFYAQYAS+EPWLKTT+PTPQKEWRQSHEDREKLDGLYECILCACCST Sbjct: 120 QPVVKDLVPDLTNFYAQYASVEPWLKTTSPTPQKEWRQSHEDREKLDGLYECILCACCST 179 Query: 181 SCPSYWWNSERFLGPAALLQANRWVTDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 240 SCPSYWWNS+R+LGPAALLQANRWV+DSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP Sbjct: 180 SCPSYWWNSDRYLGPAALLQANRWVSDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 239 Query: 241 KGLNPSEAIAELKFKLVERQI 261 KGLNP+EAIAELK K+VERQI Sbjct: 240 KGLNPAEAIAELKLKMVERQI 260 >ref|YP_001236433.1| succinate dehydrogenase iron-sulfur subunit [Bradyrhizobium sp. BTAi1] gb|ABQ32527.1| succinate dehydrogenase subunit B [Bradyrhizobium sp. BTAi1] Length = 260 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/261 (93%), Positives = 252/261 (96%), Gaps = 1/261 (0%) Query: 1 MVEFALPKNSKISGGKTWPKPAGATETREFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL 60 M EFALPKNS+I+GGKTWPKP GATE REF+VYRWNPDDGKNPSVDTYYVD NDCGPMVL Sbjct: 1 MAEFALPKNSQITGGKTWPKPVGATEVREFKVYRWNPDDGKNPSVDTYYVDVNDCGPMVL 60 Query: 61 DGLIWIKNHIDPTLTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDVGAGGAVKVNPLPH 120 DGLIWIKNHIDP+LTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDV GAVK+NPLPH Sbjct: 61 DGLIWIKNHIDPSLTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDV-KDGAVKINPLPH 119 Query: 121 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEWRQSHEDREKLDGLYECILCACCST 180 QPVVKDLVPDLTNFYAQYASIEPWLKTT+PTPQKEWRQSHEDREKLDGLYECILCACCST Sbjct: 120 QPVVKDLVPDLTNFYAQYASIEPWLKTTSPTPQKEWRQSHEDREKLDGLYECILCACCST 179 Query: 181 SCPSYWWNSERFLGPAALLQANRWVTDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 240 SCPSYWWNS+R+LGPAALLQANRWV DSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP Sbjct: 180 SCPSYWWNSQRYLGPAALLQANRWVKDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 239 Query: 241 KGLNPSEAIAELKFKLVERQI 261 KGLNP+EAIAELK KLVERQI Sbjct: 240 KGLNPAEAIAELKLKLVERQI 260 >ref|YP_001202448.1| succinate dehydrogenase iron-sulfur subunit [Bradyrhizobium sp. ORS 278] emb|CAL74198.1| succinate dehydrogenase, Fe-S protein [Bradyrhizobium sp. ORS 278] Length = 260 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 242/261 (92%), Positives = 252/261 (96%), Gaps = 1/261 (0%) Query: 1 MVEFALPKNSKISGGKTWPKPAGATETREFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL 60 M EFALPKNS+I+GGKTWPKPAGATE REF+VYRWNPDDGKNPSVDTYYVD NDCGPMVL Sbjct: 1 MAEFALPKNSQITGGKTWPKPAGATEVREFKVYRWNPDDGKNPSVDTYYVDVNDCGPMVL 60 Query: 61 DGLIWIKNHIDPTLTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDVGAGGAVKVNPLPH 120 DGLIWIKNHIDP+LTFRRSCREGVCGSCAMNIDGQNTLACT+SMHDV GAVK+NPLPH Sbjct: 61 DGLIWIKNHIDPSLTFRRSCREGVCGSCAMNIDGQNTLACTRSMHDV-KDGAVKINPLPH 119 Query: 121 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEWRQSHEDREKLDGLYECILCACCST 180 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEW+Q+HEDREKLDGLYECILCACCST Sbjct: 120 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEWKQTHEDREKLDGLYECILCACCST 179 Query: 181 SCPSYWWNSERFLGPAALLQANRWVTDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 240 SCPSYWWNSER+LGPAALLQA RWV DSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP Sbjct: 180 SCPSYWWNSERYLGPAALLQATRWVKDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 239 Query: 241 KGLNPSEAIAELKFKLVERQI 261 KGLNP+EAIAELK KLVERQI Sbjct: 240 KGLNPAEAIAELKLKLVERQI 260 >ref|YP_483946.1| succinate dehydrogenase iron-sulfur subunit [Rhodopseudomonas palustris HaA2] gb|ABD05035.1| succinate dehydrogenase subunit B [Rhodopseudomonas palustris HaA2] Length = 269 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/261 (91%), Positives = 246/261 (94%), Gaps = 1/261 (0%) Query: 1 MVEFALPKNSKISGGKTWPKPAGATETREFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL 60 MVEFALPKNSKI GGK WPKP GATE REFRVYRWNPDDGKNPSVDTYYVD +DCGPMVL Sbjct: 10 MVEFALPKNSKIVGGKAWPKPEGATEVREFRVYRWNPDDGKNPSVDTYYVDKHDCGPMVL 69 Query: 61 DGLIWIKNHIDPTLTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDVGAGGAVKVNPLPH 120 DGLIWIKN+IDPTLTFRRSCREGVCGSCAMNIDG+NTLACTK+M DV G AVKVNPLPH Sbjct: 70 DGLIWIKNNIDPTLTFRRSCREGVCGSCAMNIDGENTLACTKAMDDV-RGEAVKVNPLPH 128 Query: 121 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEWRQSHEDREKLDGLYECILCACCST 180 QPVVKDLVPDLTNFYAQYASIEPWL+T TPTPQKEWRQSH DREKLDGLYECILCACCST Sbjct: 129 QPVVKDLVPDLTNFYAQYASIEPWLQTVTPTPQKEWRQSHADREKLDGLYECILCACCST 188 Query: 181 SCPSYWWNSERFLGPAALLQANRWVTDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 240 SCPSYWWNS+RFLGPAALLQA RWV DSRDEATGERLDNLEDPFR+YRCHTIMNCAKACP Sbjct: 189 SCPSYWWNSDRFLGPAALLQATRWVEDSRDEATGERLDNLEDPFRIYRCHTIMNCAKACP 248 Query: 241 KGLNPSEAIAELKFKLVERQI 261 KGLNPSEAIA LK KLVERQI Sbjct: 249 KGLNPSEAIASLKLKLVERQI 269 >ref|NP_945569.1| succinate dehydrogenase iron-sulfur subunit [Rhodopseudomonas palustris CGA009] ref|YP_001989251.1| succinate dehydrogenase iron-sulfur subunit [Rhodopseudomonas palustris TIE-1] emb|CAE25660.1| succinate dehydrogenase iron-sulfur protein subunit [Rhodopseudomonas palustris CGA009] gb|ACE98775.1| succinate dehydrogenase and fumarate reductase iron-sulfur protein [Rhodopseudomonas palustris TIE-1] Length = 260 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 237/261 (90%), Positives = 246/261 (94%), Gaps = 1/261 (0%) Query: 1 MVEFALPKNSKISGGKTWPKPAGATETREFRVYRWNPDDGKNPSVDTYYVDTNDCGPMVL 60 MVEFALPKNSKI GGKTWPKP GATE REFRVYRWNPDDGKNPSVDTYYVD +DCGPMVL Sbjct: 1 MVEFALPKNSKIVGGKTWPKPEGATEVREFRVYRWNPDDGKNPSVDTYYVDKHDCGPMVL 60 Query: 61 DGLIWIKNHIDPTLTFRRSCREGVCGSCAMNIDGQNTLACTKSMHDVGAGGAVKVNPLPH 120 DGLIWIKN+IDPTLTFRRSCREGVCGSCAMNIDG+NTLACTK+M DV AVK+NPLPH Sbjct: 61 DGLIWIKNNIDPTLTFRRSCREGVCGSCAMNIDGENTLACTKAMDDV-RDDAVKINPLPH 119 Query: 121 QPVVKDLVPDLTNFYAQYASIEPWLKTTTPTPQKEWRQSHEDREKLDGLYECILCACCST 180 QPVVKDLVPDLTNFYAQYASI+PWL+T TPTPQKEWRQSH DREKLDGLYECILCACCST Sbjct: 120 QPVVKDLVPDLTNFYAQYASIQPWLQTVTPTPQKEWRQSHSDREKLDGLYECILCACCST 179 Query: 181 SCPSYWWNSERFLGPAALLQANRWVTDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACP 240 SCPSYWWNS+RFLGPAALLQA RWV DSRDEATGERLDNLEDPFR+YRCHTIMNCAKACP Sbjct: 180 SCPSYWWNSDRFLGPAALLQATRWVEDSRDEATGERLDNLEDPFRIYRCHTIMNCAKACP 239 Query: 241 KGLNPSEAIAELKFKLVERQI 261 KGLNPSEAIA LK KLVERQI Sbjct: 240 KGLNPSEAIANLKLKLVERQI 260