BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0029.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_578805.1| succinate dehydrogenase, cytochrome b subunit [...   211   2e-53
ref|YP_319404.1| succinate dehydrogenase, cytochrome b subunit [...   199   1e-49
ref|NP_767153.1| succinate dehydrogenase hydrophobic membrane an...   197   3e-49
ref|ZP_01045466.1| succinate dehydrogenase, cytochrome b subunit...   193   7e-48
ref|YP_004106792.1| succinate dehydrogenase, hydrophobic membran...   185   2e-45

>ref|YP_578805.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter
           hamburgensis X14]
 gb|ABE64345.1| succinate dehydrogenase subunit D [Nitrobacter hamburgensis X14]
          Length = 133

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 116/130 (89%)

Query: 1   MSGPSSMRTPLERVRGLGSAHTGTGDFWRQRLTAVAMTLLIVPVIVVVITLIGRNHAGAA 60
           +SGP SMRTPL RVR LG+AH+GT DFWRQRLTAVAM LLIVP+IVV++ L+GRN AGAA
Sbjct: 4   LSGPKSMRTPLSRVRNLGAAHSGTKDFWRQRLTAVAMILLIVPMIVVMMILLGRNQAGAA 63

Query: 61  QILGSIPIAIILLLFIIASTWHMKIGMQVVIEDYIHNEKLKIASVMANNFFCVAVALASI 120
           QILGS PIAII+LLF++AS WHMKIGMQV+IEDY+H+EK K+AS+MANNFF V +ALA+ 
Sbjct: 64  QILGSPPIAIIMLLFVVASIWHMKIGMQVIIEDYVHDEKTKLASIMANNFFSVTLALAAA 123

Query: 121 YAILKLSSGV 130
           YAI KLSSGV
Sbjct: 124 YAIFKLSSGV 133


>ref|YP_319404.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter
           winogradskyi Nb-255]
 gb|ABA06052.1| succinate dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
          Length = 135

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 112/129 (86%)

Query: 2   SGPSSMRTPLERVRGLGSAHTGTGDFWRQRLTAVAMTLLIVPVIVVVITLIGRNHAGAAQ 61
           SG  SMRTPL RVR  GSAH+GT DFWRQRLT+VAM LLIVP++VV++ L+GRN AGAAQ
Sbjct: 7   SGAKSMRTPLGRVRNHGSAHSGTTDFWRQRLTSVAMILLIVPMVVVMMILLGRNQAGAAQ 66

Query: 62  ILGSIPIAIILLLFIIASTWHMKIGMQVVIEDYIHNEKLKIASVMANNFFCVAVALASIY 121
           ILGS PIAII+LLF++AS WHMKIGMQV+IEDY+H+ KLK+AS+MANNFF V +AL + Y
Sbjct: 67  ILGSPPIAIIMLLFVVASIWHMKIGMQVIIEDYVHDGKLKLASIMANNFFSVTLALTAAY 126

Query: 122 AILKLSSGV 130
           AI KLSSGV
Sbjct: 127 AIFKLSSGV 135


>ref|NP_767153.1| succinate dehydrogenase hydrophobic membrane anchor protein subunit
           [Bradyrhizobium japonicum USDA 110]
 gb|AAC17941.1| succinate dehydrogenase membrane anchor subunit [Bradyrhizobium
           japonicum]
 dbj|BAC45778.1| succinate dehydrogenase hydrophobic membrane anchor protein subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 134

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/125 (72%), Positives = 108/125 (86%)

Query: 6   SMRTPLERVRGLGSAHTGTGDFWRQRLTAVAMTLLIVPVIVVVITLIGRNHAGAAQILGS 65
           SMRTPL RVR LG+AH+GT DFWRQR+T VAM L+++PVIV+++ L GRN A  AQ +GS
Sbjct: 10  SMRTPLGRVRNLGAAHSGTSDFWRQRITGVAMVLMMIPVIVIIVMLFGRNQAFVAQTIGS 69

Query: 66  IPIAIILLLFIIASTWHMKIGMQVVIEDYIHNEKLKIASVMANNFFCVAVALASIYAILK 125
           +PIAII+LLFI AS WHMKIGMQVVIEDY+HNEKLK+ ++M NNFF +AVALAS YAILK
Sbjct: 70  LPIAIIMLLFIFASAWHMKIGMQVVIEDYVHNEKLKLTAIMLNNFFSIAVALASTYAILK 129

Query: 126 LSSGV 130
           LSSGV
Sbjct: 130 LSSGV 134


>ref|ZP_01045466.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter sp.
           Nb-311A]
 gb|EAQ36794.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter sp.
           Nb-311A]
          Length = 135

 Score =  193 bits (490), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 113/129 (87%)

Query: 2   SGPSSMRTPLERVRGLGSAHTGTGDFWRQRLTAVAMTLLIVPVIVVVITLIGRNHAGAAQ 61
           SG  SMRTPL RVR LGSAH+GT DFWRQRLT+VAM LLI+P++VV++ L+GRN AGAAQ
Sbjct: 7   SGAKSMRTPLGRVRNLGSAHSGTTDFWRQRLTSVAMILLIIPMVVVMMILLGRNQAGAAQ 66

Query: 62  ILGSIPIAIILLLFIIASTWHMKIGMQVVIEDYIHNEKLKIASVMANNFFCVAVALASIY 121
           ILGS PIAII+LLF++AS WHMKIGMQV+IEDY+H+EKLK+AS+MANNFF   +AL + Y
Sbjct: 67  ILGSPPIAIIMLLFVVASIWHMKIGMQVIIEDYVHDEKLKLASIMANNFFSATLALTAAY 126

Query: 122 AILKLSSGV 130
           AI KLSSGV
Sbjct: 127 AIFKLSSGV 135


>ref|YP_004106792.1| succinate dehydrogenase, hydrophobic membrane anchor protein
           [Rhodopseudomonas palustris DX-1]
 gb|ADU42059.1| succinate dehydrogenase, hydrophobic membrane anchor protein
           [Rhodopseudomonas palustris DX-1]
          Length = 137

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 108/127 (85%)

Query: 4   PSSMRTPLERVRGLGSAHTGTGDFWRQRLTAVAMTLLIVPVIVVVITLIGRNHAGAAQIL 63
           P+SMRTP+ +VR  G A +GT DFWRQR+T VAMTLLI+P IVV++ L+GRN A AAQIL
Sbjct: 11  PTSMRTPIGKVRKFGPAGSGTSDFWRQRITGVAMTLLILPTIVVIMMLLGRNQAAAAQIL 70

Query: 64  GSIPIAIILLLFIIASTWHMKIGMQVVIEDYIHNEKLKIASVMANNFFCVAVALASIYAI 123
           GS  IA++++LFIIAS  HMKIGMQVVIEDYI NEKLK+ +VMANNFF +AVALA+I+AI
Sbjct: 71  GSPLIALVMILFIIASAIHMKIGMQVVIEDYIQNEKLKLVTVMANNFFSIAVALAAIFAI 130

Query: 124 LKLSSGV 130
            K++SGV
Sbjct: 131 FKMASGV 137