BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0028.p (132 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767152.1| succinate dehydrogenase cytochrome B-556 subuni... 236 6e-61 ref|YP_001202445.1| succinate dehydrogenase cytochrome b556 subu... 232 2e-59 ref|YP_529970.1| succinate dehydrogenase, cytochrome b subunit [... 215 1e-54 ref|NP_945572.1| succinate dehydrogenase cytochrome b subunit [R... 213 8e-54 ref|YP_779449.1| succinate dehydrogenase, cytochrome b subunit [... 212 2e-53 >ref|NP_767152.1| succinate dehydrogenase cytochrome B-556 subunit [Bradyrhizobium japonicum USDA 110] gb|AAC17940.1| succinate dehydrogenase membrane anchor subunit [Bradyrhizobium japonicum] dbj|BAC45777.1| succinate dehydrogenase cytochrome B-556 subunit [Bradyrhizobium japonicum USDA 110] Length = 132 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 115/132 (87%), Positives = 125/132 (94%) Query: 1 MTARIERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQ 60 MTARIERPLSPH+Q YRWTLTMALSIVHRATG+ALY GTLLLAWWL AAASGP+AY++VQ Sbjct: 1 MTARIERPLSPHMQVYRWTLTMALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQ 60 Query: 61 AFTGSAIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVL 120 AFTGS IG+LIVFGYTWALMHH+ SGIRHFVWDLGYGFKANEREALTWGAL+ GI LTVL Sbjct: 61 AFTGSIIGRLIVFGYTWALMHHMLSGIRHFVWDLGYGFKANEREALTWGALIGGIVLTVL 120 Query: 121 IWIIAYAVGGGR 132 IWI+AYA+GGGR Sbjct: 121 IWIVAYAIGGGR 132 >ref|YP_001202445.1| succinate dehydrogenase cytochrome b556 subunit [Bradyrhizobium sp. ORS 278] emb|CAL74195.1| Succinate dehydrogenase cytochrome b556 subunit [Bradyrhizobium sp. ORS 278] Length = 132 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 113/132 (85%), Positives = 122/132 (92%) Query: 1 MTARIERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQ 60 MTARIERPLSPHLQTYRWTLTM LSIVHRATG+ALYFGTLLLAWWL AAASGPSAY+ VQ Sbjct: 1 MTARIERPLSPHLQTYRWTLTMILSIVHRATGVALYFGTLLLAWWLIAAASGPSAYSYVQ 60 Query: 61 AFTGSAIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVL 120 F GS +G+LIVFGYTWAL+HHL SGIRHFVWDLGYGFK NERE LTWGAL+ GI+LTVL Sbjct: 61 GFMGSFLGRLIVFGYTWALLHHLLSGIRHFVWDLGYGFKPNERETLTWGALIGGISLTVL 120 Query: 121 IWIIAYAVGGGR 132 +WI+AYAVGGGR Sbjct: 121 VWIVAYAVGGGR 132 >ref|YP_529970.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas palustris BisB18] gb|ABD85651.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris BisB18] Length = 132 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 99/132 (75%), Positives = 118/132 (89%) Query: 1 MTARIERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQ 60 MTARIERPLSPH+Q YRW+LTMALSIVHR TG+ LYFGTLLLAWWL A A+GPSAYANVQ Sbjct: 1 MTARIERPLSPHMQAYRWSLTMALSIVHRLTGITLYFGTLLLAWWLIAVAAGPSAYANVQ 60 Query: 61 AFTGSAIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVL 120 AFTGS IG+L++FGYTW+LMHH+ SG+RHF+WDLGYGF A ERE++TW AL+ G+ LTVL Sbjct: 61 AFTGSWIGRLMLFGYTWSLMHHMLSGVRHFIWDLGYGFTAAERESMTWAALIGGVVLTVL 120 Query: 121 IWIIAYAVGGGR 132 +WI+A+ +GG R Sbjct: 121 LWIVAFTLGGAR 132 >ref|NP_945572.1| succinate dehydrogenase cytochrome b subunit [Rhodopseudomonas palustris CGA009] ref|YP_001989254.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas palustris TIE-1] emb|CAE25663.1| succinate dehydrogenase membrane anchor/cytochrome b subunit [Rhodopseudomonas palustris CGA009] gb|ACE98778.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas palustris TIE-1] Length = 132 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 101/132 (76%), Positives = 117/132 (88%) Query: 1 MTARIERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQ 60 MTARIERPLSPH+Q YRW+LTM +SIVHRATG+ALY GTLLLAWWL A A+GP+AYANVQ Sbjct: 1 MTARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQ 60 Query: 61 AFTGSAIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVL 120 AFTGS IG+LIVFGYTW+LMHH+ SG+RHFVWDLGYGFK +RE LTW AL+ GI LTVL Sbjct: 61 AFTGSWIGRLIVFGYTWSLMHHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVL 120 Query: 121 IWIIAYAVGGGR 132 +W+IAY++G R Sbjct: 121 LWVIAYSMGVAR 132 >ref|YP_779449.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas palustris BisA53] gb|ABJ04469.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris BisA53] Length = 132 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 100/132 (75%), Positives = 115/132 (87%) Query: 1 MTARIERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQ 60 M +RIERPLSPH+Q YRWTLTM LSIVHRATG+ALYFGTL+LAWWL A +GP AYANVQ Sbjct: 1 MPSRIERPLSPHMQAYRWTLTMTLSIVHRATGVALYFGTLVLAWWLIAVGAGPGAYANVQ 60 Query: 61 AFTGSAIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVL 120 AFTGS IGKLI+FGYTW+LMHH SGIRHFVWDLGYG+K +RE LTW AL+ G+ LTVL Sbjct: 61 AFTGSWIGKLIMFGYTWSLMHHFLSGIRHFVWDLGYGYKPADRELLTWAALIGGVVLTVL 120 Query: 121 IWIIAYAVGGGR 132 +W+ A+A+GGGR Sbjct: 121 LWVAAFALGGGR 132