BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0026.p         (186 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC17939.1| GstR [Bradyrhizobium japonicum]                        230   8e-59
ref|NP_767151.1| transcriptional regulator [Bradyrhizobium japon...   229   1e-58
ref|YP_001863133.1| LysR family transcriptional regulator [Burkh...   188   4e-46
ref|YP_004279698.1| transcriptional regulator, LysR family [Agro...   144   6e-33
gb|EGP57867.1| LysR family transcriptional regulator [Agrobacter...   144   8e-33

>gb|AAC17939.1| GstR [Bradyrhizobium japonicum]
          Length = 342

 Score =  230 bits (586), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 140/153 (91%)

Query: 1   LDQLAAMAAFVRAVESGSLSAAARALPSSLTSVSRQISALEEHFGTRLLLRTTRQLALTD 60
           +DQLAAMA FVRAV+SGSLSAAAR+LPSSLT+VSRQISALE+HFGTRLL+RTTRQLALTD
Sbjct: 42  MDQLAAMATFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTD 101

Query: 61  DGRILYERAKSILGEVREIEAALSRDPLQPSGRIRVSSPGLIGRLVIAPLLVEFLRRYPA 120
           DGR+LYERAKSILGEV+EIE AL+    +PSGR+RVS+P L+GRL+IAPLL +FL   P+
Sbjct: 102 DGRMLYERAKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPS 161

Query: 121 LSVDLLLVDRAVDMVEEDIHLAIRIGRLRDSQL 153
           LSVDLLLVDR V+++EED+HLA+R+GR+ DSQL
Sbjct: 162 LSVDLLLVDRNVNLIEEDVHLALRVGRIPDSQL 194


>ref|NP_767151.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45776.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 303

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 140/153 (91%)

Query: 1   LDQLAAMAAFVRAVESGSLSAAARALPSSLTSVSRQISALEEHFGTRLLLRTTRQLALTD 60
           +DQLAAMA FVRAV+SGSLSAAAR+LPSSLT+VSRQISALE+HFGTRLL+RTTRQLALTD
Sbjct: 3   MDQLAAMATFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTD 62

Query: 61  DGRILYERAKSILGEVREIEAALSRDPLQPSGRIRVSSPGLIGRLVIAPLLVEFLRRYPA 120
           DGR+LYERAKSILGEV+EIE AL+    +PSGR+RVS+P L+GRL+IAPLL +FL   P+
Sbjct: 63  DGRMLYERAKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPS 122

Query: 121 LSVDLLLVDRAVDMVEEDIHLAIRIGRLRDSQL 153
           LSVDLLLVDR V+++EED+HLA+R+GR+ DSQL
Sbjct: 123 LSVDLLLVDRNVNLIEEDVHLALRVGRIPDSQL 155


>ref|YP_001863133.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC76087.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 295

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 130/163 (79%), Gaps = 3/163 (1%)

Query: 1   LDQLAAMAAFVRAVESGSLSAAARALPSSLTSVSRQISALEEHFGTRLLLRTTRQLALTD 60
           +D+  AM+ +VR VE+GSLSAAARA+P SLTSVSR I+ALE+ FG +LL RTTR LA+TD
Sbjct: 1   MDRFEAMSVYVRVVEAGSLSAAARAIPMSLTSVSRHIAALEDQFGAQLLRRTTRNLAMTD 60

Query: 61  DGRILYERAKSILGEVREIEAALSRDPLQPSGRIRVSSPGLIGRLVIAPLLVEFLRRYPA 120
           +GRILY+RAKSILGEV E+ +ALS    + SGR+R+++P L+GRL+IAPLL  FL  +P 
Sbjct: 61  EGRILYDRAKSILGEVDELGSALSAGRGRLSGRLRIAAPNLLGRLLIAPLLPRFLAMHPD 120

Query: 121 LSVDLLLVDRAVDMVEEDIHLAIRIGRLRDSQLXAEAHRSADD 163
           ++VDL+LVDR V++VEE +HLA+R+GRL DS L A   R  DD
Sbjct: 121 VAVDLMLVDRVVNIVEEGLHLAVRVGRLPDSSLVA---RKLDD 160


>ref|YP_004279698.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gb|ADY65378.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 101/155 (65%)

Query: 1   LDQLAAMAAFVRAVESGSLSAAARALPSSLTSVSRQISALEEHFGTRLLLRTTRQLALTD 60
           +DQL+AM  F R VE+G+ S AA AL    T+V+  + ALE H  T LL RTTR++ LT 
Sbjct: 1   MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLHTTLLNRTTRRVMLTT 60

Query: 61  DGRILYERAKSILGEVREIEAALSRDPLQPSGRIRVSSPGLIGRLVIAPLLVEFLRRYPA 120
           DG + YERA  IL E+ E++ ++S   +QPSGR+RV   G+   LV+ P L EF +RYP 
Sbjct: 61  DGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQ 120

Query: 121 LSVDLLLVDRAVDMVEEDIHLAIRIGRLRDSQLXA 155
           + +DL + DR VD + E++  A+R+G LRD  L A
Sbjct: 121 IRLDLGVGDRLVDYIAENVDCALRVGTLRDQSLIA 155


>gb|EGP57867.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           F2]
          Length = 299

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 101/155 (65%)

Query: 1   LDQLAAMAAFVRAVESGSLSAAARALPSSLTSVSRQISALEEHFGTRLLLRTTRQLALTD 60
           +DQL+AM  F R VE+G+ S AA AL    T+V+  + ALE H  T LL RTTR++ LT 
Sbjct: 1   MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTT 60

Query: 61  DGRILYERAKSILGEVREIEAALSRDPLQPSGRIRVSSPGLIGRLVIAPLLVEFLRRYPA 120
           DG + YERA  IL E+ E++ ++S   +QPSGR+RV   G+   LV+ P L EF +RYP 
Sbjct: 61  DGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQ 120

Query: 121 LSVDLLLVDRAVDMVEEDIHLAIRIGRLRDSQLXA 155
           + +DL + DR VD + E++  A+R+G LRD  L A
Sbjct: 121 IRLDLGVGDRLVDYIAENVDCALRVGVLRDQSLIA 155