BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0016.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578784.1| major facilitator transporter [Nitrobacter hamb... 509 e-142 ref|YP_567628.1| major facilitator transporter [Rhodopseudomonas... 483 e-134 ref|NP_767144.1| hypothetical protein blr0503 [Bradyrhizobium ja... 447 e-123 ref|YP_004106785.1| hypothetical protein Rpdx1_0411 [Rhodopseudo... 442 e-122 ref|YP_001989261.1| hypothetical protein Rpal_0225 [Rhodopseudom... 438 e-121 >ref|YP_578784.1| major facilitator transporter [Nitrobacter hamburgensis X14] gb|ABE64324.1| major facilitator superfamily MFS_1 [Nitrobacter hamburgensis X14] Length = 398 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 268/351 (76%), Positives = 303/351 (86%), Gaps = 2/351 (0%) Query: 73 LALSYSAAGFMNTINAAGYLAGALLASRLIERFGLAASVRWSTLACALSLALCALSGNFV 132 L SYS+AGFMNTINAAGYLAGAL+A+ + RFG AAS RWST A A+SLALCAL+GNF+ Sbjct: 46 LGWSYSSAGFMNTINAAGYLAGALIAASVARRFGPAASTRWSTAAAAVSLALCALTGNFI 105 Query: 133 VLSFARLLVGFAAAIGFVGGGALAATIAQSRPERANFLLSLFYAGPGVGILASGLIAPFV 192 VLSFARL+VG AAAIGFV GG LAATIAQS+P R+N LLSLFYAGPG+GIL SGL+APFV Sbjct: 106 VLSFARLVVGIAAAIGFVAGGTLAATIAQSQPARSNVLLSLFYAGPGIGILLSGLVAPFV 165 Query: 193 LQGFGAGSWWIVWWAMTLLSAIMIVPLMLAPLHADAAAGGIVRTQFAVMPVLIYLAAYFL 252 LQ FG GSWWIVWWAMT+L+ M VP+ +A L A+ R +FA+ PV+I LAAYFL Sbjct: 166 LQYFGPGSWWIVWWAMTVLAIAMTVPMFVARLDIAASGPQTARGRFAIRPVIILLAAYFL 225 Query: 253 FGAGYIAYMTFMIAYVRDGGGGAAAQSAFWSLIGVSAFVTPWVWGRVLALDRGGLATTII 312 FGAGYIAYMTFMIAYVRDGGGGA AQSAFWSLIG+SA TPWVW R L LDRGGL+ TI+ Sbjct: 226 FGAGYIAYMTFMIAYVRDGGGGALAQSAFWSLIGLSALATPWVWRRTLGLDRGGLSMTIV 285 Query: 313 LGVNALGASLPIFGHSPLLLAISALVFGVAFFAVVGSTTAFVRFNYPPQSWPTAIAAMTI 372 LGVNA+GA++P+ GH+PLLL +SALVFGVAFFAVV STTAFVRFNYPP +WPTAIAAMTI Sbjct: 286 LGVNAIGAAMPLLGHTPLLLGLSALVFGVAFFAVVTSTTAFVRFNYPPAAWPTAIAAMTI 345 Query: 373 AFGIGQTLGPIVVGAITDAVGSLSFALNVSAAMLALGALLSAFQRKVPSQR 423 +FGIGQTLGP+VVGAITDA+GSLS+ALNVSAAMLA GA+LSAFQR P QR Sbjct: 346 SFGIGQTLGPVVVGAITDAMGSLSYALNVSAAMLAAGAILSAFQR--PLQR 394 >ref|YP_567628.1| major facilitator transporter [Rhodopseudomonas palustris BisB5] gb|ABE37727.1| major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB5] Length = 394 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 258/348 (74%), Positives = 292/348 (83%), Gaps = 2/348 (0%) Query: 76 SYSAAGFMNTINAAGYLAGALLASRLIERFGLAASVRWSTLACALSLALCALSGNFVVLS 135 SYSAAGFMNTINAAGYLAGAL+ S+L+ R+GL+A VR TL C LSLALCALSGNFV+LS Sbjct: 49 SYSAAGFMNTINAAGYLAGALITSQLVRRYGLSAIVRVGTLGCVLSLALCALSGNFVLLS 108 Query: 136 FARLLVGFAAAIGFVGGGALAATIAQSRPERANFLLSLFYAGPGVGILASGLIAPFVLQG 195 ARL+ G AA+ FV GGALA TIAQS+P+R+ FLLSLFYAGPG+GIL+SGLI PF+LQ Sbjct: 109 AARLIAGIGAALAFVAGGALATTIAQSQPQRSAFLLSLFYAGPGLGILSSGLITPFLLQA 168 Query: 196 FGAGSWWIVWWAMTLLSAIMIVPLMLAPLHADAAAGGIVRTQFAVMPVLIYLAAYFLFGA 255 G GSWWI W M LSA+M +PL+LAPL + A+ G T F++ PVLIYL YF+FGA Sbjct: 169 AGPGSWWIGWLVMAALSAVMTLPLLLAPLDSHASMSGGPATTFSIRPVLIYLVGYFMFGA 228 Query: 256 GYIAYMTFMIAYVRDGGGGAAAQSAFWSLIGVSAFVTPWVWGRVLALDRGGLATTIILGV 315 GYIAYMTFMIAYVRD GGG AAQSAFW LIG SAFVTPWVW R++ALDRGG++TTIIL V Sbjct: 229 GYIAYMTFMIAYVRDAGGGPAAQSAFWCLIGASAFVTPWVWRRIMALDRGGVSTTIILAV 288 Query: 316 NALGASLPIFGHSPLLLAISALVFGVAFFAVVGSTTAFVRFNYPPQSWPTAIAAMTIAFG 375 NALGA+LP+FG SPL+LAISALVFGV+FFAVV STTAFVRFNY +WP AIAAMTIAFG Sbjct: 289 NALGAALPLFGLSPLILAISALVFGVSFFAVVASTTAFVRFNYAQAAWPGAIAAMTIAFG 348 Query: 376 IGQTLGPIVVGAITDAVGSLSFALNVSAAMLALGALLSAFQRKVPSQR 423 IGQTLGP+ VGAITDAVGSLS AL VSAA LALGA+ SAFQR P +R Sbjct: 349 IGQTLGPLAVGAITDAVGSLSSALAVSAATLALGAVFSAFQR--PLKR 394 >ref|NP_767144.1| hypothetical protein blr0503 [Bradyrhizobium japonicum USDA 110] dbj|BAC45769.1| blr0503 [Bradyrhizobium japonicum USDA 110] Length = 434 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 267/350 (76%), Positives = 298/350 (85%) Query: 73 LALSYSAAGFMNTINAAGYLAGALLASRLIERFGLAASVRWSTLACALSLALCALSGNFV 132 L SYSAAGFMNTINA GYL GAL+ASRLI+R G +A++R TLAC +LA CAL+GNFV Sbjct: 85 LGWSYSAAGFMNTINAVGYLVGALVASRLIQRVGWSAAIRGGTLACVAALATCALTGNFV 144 Query: 133 VLSFARLLVGFAAAIGFVGGGALAATIAQSRPERANFLLSLFYAGPGVGILASGLIAPFV 192 LS ARL++G AA GFV GGALAA+IAQS+P RANFLLSLFYAGPG+GILASGLIAPF Sbjct: 145 ALSLARLVLGLGAAAGFVAGGALAASIAQSQPARANFLLSLFYAGPGIGILASGLIAPFT 204 Query: 193 LQGFGAGSWWIVWWAMTLLSAIMIVPLMLAPLHADAAAGGIVRTQFAVMPVLIYLAAYFL 252 LQ FG GSWW+VWWAMTLLSA M VPL L + + FA++PVLIYLA YFL Sbjct: 205 LQHFGPGSWWLVWWAMTLLSAAMTVPLFLVRIESRVRFTEGSHASFAILPVLIYLAGYFL 264 Query: 253 FGAGYIAYMTFMIAYVRDGGGGAAAQSAFWSLIGVSAFVTPWVWGRVLALDRGGLATTII 312 FGAGYIAYMTFMIAYVRDGGGGAAAQ+AFWSLIG+SAFVTPWVW VLALDRGGLAT II Sbjct: 265 FGAGYIAYMTFMIAYVRDGGGGAAAQAAFWSLIGLSAFVTPWVWRGVLALDRGGLATAII 324 Query: 313 LGVNALGASLPIFGHSPLLLAISALVFGVAFFAVVGSTTAFVRFNYPPQSWPTAIAAMTI 372 LG NALGA+LP+ GHSP LA+SA+VFGVAFFAVVGSTTAFVRFNYPP+ WPTAIAAMTI Sbjct: 325 LGTNALGAALPMLGHSPAWLAVSAVVFGVAFFAVVGSTTAFVRFNYPPEVWPTAIAAMTI 384 Query: 373 AFGIGQTLGPIVVGAITDAVGSLSFALNVSAAMLALGALLSAFQRKVPSQ 422 +FG+GQTLGPIVVGAITDA+GSLS+ALNVSAA+LALGA+ + QRKV S Sbjct: 385 SFGVGQTLGPIVVGAITDALGSLSYALNVSAALLALGAVAALCQRKVGSS 434 >ref|YP_004106785.1| hypothetical protein Rpdx1_0411 [Rhodopseudomonas palustris DX-1] gb|ADU42052.1| hypothetical protein Rpdx1_0411 [Rhodopseudomonas palustris DX-1] Length = 397 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 257/347 (74%), Positives = 288/347 (82%) Query: 73 LALSYSAAGFMNTINAAGYLAGALLASRLIERFGLAASVRWSTLACALSLALCALSGNFV 132 LA SYSAAGFMNTINAAGYL GAL+ SRL+ RFG+AA VR TLAC LSLALCA+SGNF Sbjct: 47 LAWSYSAAGFMNTINAAGYLVGALVTSRLVARFGMAAIVRAGTLACVLSLALCAISGNFA 106 Query: 133 VLSFARLLVGFAAAIGFVGGGALAATIAQSRPERANFLLSLFYAGPGVGILASGLIAPFV 192 VLS ARL+ G AA+ FV GGALA TIAQ++P R+ FLLSLFYAGPG+GIL+SGLIAPF+ Sbjct: 107 VLSGARLIAGVGAALAFVAGGALATTIAQAQPARSAFLLSLFYAGPGIGILSSGLIAPFL 166 Query: 193 LQGFGAGSWWIVWWAMTLLSAIMIVPLMLAPLHADAAAGGIVRTQFAVMPVLIYLAAYFL 252 LQ G SWW+ W + LSA M +P++LAP+ DA GG F + PVLIYLA YF+ Sbjct: 167 LQAAGPSSWWLGWLVLAALSAAMTLPVLLAPIGVDAGLGGGRAAPFRIAPVLIYLAGYFM 226 Query: 253 FGAGYIAYMTFMIAYVRDGGGGAAAQSAFWSLIGVSAFVTPWVWGRVLALDRGGLATTII 312 FGAGYIAYMTFMIAYVRD GGGAAAQSAFW LIG+SAFVTPWVW RV+AL RGGL+TTII Sbjct: 227 FGAGYIAYMTFMIAYVRDAGGGAAAQSAFWCLIGISAFVTPWVWRRVMALHRGGLSTTII 286 Query: 313 LGVNALGASLPIFGHSPLLLAISALVFGVAFFAVVGSTTAFVRFNYPPQSWPTAIAAMTI 372 L VNA+GA LP+F SPL+LA SALVFGV+FFAVV STTAFVRFNYP +WP AIAAMTI Sbjct: 287 LAVNAVGAVLPLFSLSPLMLATSALVFGVSFFAVVASTTAFVRFNYPQAAWPGAIAAMTI 346 Query: 373 AFGIGQTLGPIVVGAITDAVGSLSFALNVSAAMLALGALLSAFQRKV 419 AFGIGQTLGP+VVGAITDA+ SLS AL VSAA LALGALLSAFQR + Sbjct: 347 AFGIGQTLGPLVVGAITDAIDSLSSALAVSAATLALGALLSAFQRPL 393 >ref|YP_001989261.1| hypothetical protein Rpal_0225 [Rhodopseudomonas palustris TIE-1] gb|ACE98785.1| protein of unknown function DUF1228 [Rhodopseudomonas palustris TIE-1] Length = 395 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/346 (73%), Positives = 285/346 (82%) Query: 76 SYSAAGFMNTINAAGYLAGALLASRLIERFGLAASVRWSTLACALSLALCALSGNFVVLS 135 SYSAAGFMNTINAAGYL GAL+ SRL+ RFG+AA VR TLAC SLALCALSGNF VLS Sbjct: 50 SYSAAGFMNTINAAGYLVGALVTSRLVARFGMAAIVRVGTLACVASLALCALSGNFAVLS 109 Query: 136 FARLLVGFAAAIGFVGGGALAATIAQSRPERANFLLSLFYAGPGVGILASGLIAPFVLQG 195 ARL+ G AA+ FV GGALA TIAQ++P R+ FLLSLFYAGPG+GIL+SGLIAPF+LQ Sbjct: 110 AARLIAGIGAALAFVAGGALATTIAQAQPARSAFLLSLFYAGPGIGILSSGLIAPFLLQA 169 Query: 196 FGAGSWWIVWWAMTLLSAIMIVPLMLAPLHADAAAGGIVRTQFAVMPVLIYLAAYFLFGA 255 G GSWW+ W + LSA M +P++LAP+ D GG F + PVL+YLA YF+FGA Sbjct: 170 AGPGSWWLGWLVLAALSAAMTLPVLLAPIGVDGGLGGGRAAPFRIAPVLVYLAGYFMFGA 229 Query: 256 GYIAYMTFMIAYVRDGGGGAAAQSAFWSLIGVSAFVTPWVWGRVLALDRGGLATTIILGV 315 GYIAYMTFMIAYVRD GGGAAAQSAFW LIG+SAFVTPWVW RV+AL RGGL+TTIIL V Sbjct: 230 GYIAYMTFMIAYVRDAGGGAAAQSAFWCLIGISAFVTPWVWRRVMALHRGGLSTTIILAV 289 Query: 316 NALGASLPIFGHSPLLLAISALVFGVAFFAVVGSTTAFVRFNYPPQSWPTAIAAMTIAFG 375 NA+GA LP+F SP++LA SALVFGV+FFAVV STTAFVRFNYP WP AIAAMTIAFG Sbjct: 290 NAVGAVLPLFSLSPVMLATSALVFGVSFFAVVASTTAFVRFNYPQAGWPGAIAAMTIAFG 349 Query: 376 IGQTLGPIVVGAITDAVGSLSFALNVSAAMLALGALLSAFQRKVPS 421 IGQTLGP+VVGAITDA+GSLS AL VSAA LALGA LSAFQR +P Sbjct: 350 IGQTLGPLVVGAITDAIGSLSSALAVSAATLALGAALSAFQRPLPK 395