BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0014.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241561.1| 5-methyltetrahydropteroyltriglutamate--homoc... 701 0.0 ref|YP_001207153.1| 5-methyltetrahydropteroyltriglutamate--homoc... 700 0.0 ref|NP_772588.1| 5-methyltetrahydropteroyltriglutamate--homocyst... 697 0.0 ref|YP_001993523.1| 5-methyltetrahydropteroyltriglutamate--homoc... 683 0.0 ref|YP_004110568.1| methionine synthase vitamin-B12 independent ... 682 0.0 >ref|YP_001241561.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Bradyrhizobium sp. BTAi1] gb|ABQ37655.1| hypothetical protein BBta_5702 [Bradyrhizobium sp. BTAi1] Length = 372 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/372 (87%), Positives = 355/372 (95%) Query: 1 MQRTKPPFRADEVGSLLRPPKIKEARARLEKGEISADELRKVEDMEIEKVVHKQASVGLK 60 MQRTKPPFRADEVGSLLRP KIKEARA+LEKGEISAD+LRK+EDMEIEKVVH+QAS GLK Sbjct: 1 MQRTKPPFRADEVGSLLRPQKIKEARAKLEKGEISADDLRKIEDMEIEKVVHRQASTGLK 60 Query: 61 LATDGEFRRSWWHFDFLSHLTGCELFHPDMGIQFAGVQTRHDAIRVIGKLDFSDHHPMLD 120 LATDGEFRRSWWHFDFL+ LTGCELFHPD GIQF GVQTRHD++RVIGKLDF D HPMLD Sbjct: 61 LATDGEFRRSWWHFDFLAKLTGCELFHPDTGIQFTGVQTRHDSVRVIGKLDFPDDHPMLD 120 Query: 121 HFRFLKKYADQAHVTPKMTIPSPAVLHFRGGRKLISKEVYPDLEEFYQDLGKTYRKAVKA 180 HFRFLKK+AD AHVT KMTIPSPAVLHFRGGRK ISKEVYPDL+ FY+DLGKTYRKAVKA Sbjct: 121 HFRFLKKHADTAHVTAKMTIPSPAVLHFRGGRKSISKEVYPDLDAFYEDLGKTYRKAVKA 180 Query: 181 FYDAGCRYLQFDDTVWAYLCSQEELQKSRDRGDNPDGLQEIYARVINYAIADRPSDMVIT 240 FYDAGCRYLQFDDTVWAYLCSQ+EL+K+R+RGDNPDGLQ+IY+R+INYAIA+RP+DM IT Sbjct: 181 FYDAGCRYLQFDDTVWAYLCSQDELKKARERGDNPDGLQQIYSRIINYAIAERPADMTIT 240 Query: 241 THVCRGNFRSTWISSGGYEPVAETLLAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVV 300 THVCRGNFRSTWISSGGYEPVAET+LA TNYDGYFLEYDS+RAGGFEPLRFLPKGNKVVV Sbjct: 241 THVCRGNFRSTWISSGGYEPVAETMLANTNYDGYFLEYDSERAGGFEPLRFLPKGNKVVV 300 Query: 301 VGVITSKFGELEKKDDIKRRLEEASKFAPIEQLAVSPQCGFASTEEGNILSEEEQWAKLR 360 VG++TSK ELEKKDDIKRRLEEASKFAP++QLA+SPQCGFASTEEGNILSEEEQWAKLR Sbjct: 301 VGLVTSKVDELEKKDDIKRRLEEASKFAPLDQLALSPQCGFASTEEGNILSEEEQWAKLR 360 Query: 361 LAVEVANEVWGK 372 L VE+A E+WGK Sbjct: 361 LCVELAEEIWGK 372 >ref|YP_001207153.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Bradyrhizobium sp. ORS 278] emb|CAL78936.1| conserved hypothetical protein; putative methionine synthase [Bradyrhizobium sp. ORS 278] Length = 372 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/372 (87%), Positives = 354/372 (95%) Query: 1 MQRTKPPFRADEVGSLLRPPKIKEARARLEKGEISADELRKVEDMEIEKVVHKQASVGLK 60 MQRTKPPFRADEVGSLLRP KIKEARA+LEKGEISA +L K+EDMEIEKVVH+QAS GLK Sbjct: 1 MQRTKPPFRADEVGSLLRPQKIKEARAKLEKGEISAADLAKIEDMEIEKVVHRQASTGLK 60 Query: 61 LATDGEFRRSWWHFDFLSHLTGCELFHPDMGIQFAGVQTRHDAIRVIGKLDFSDHHPMLD 120 LATDGEFRRSWWHFDFL+ LTGCELFHPD GIQF GVQTRHDA+RVIGKLDF D HPMLD Sbjct: 61 LATDGEFRRSWWHFDFLAKLTGCELFHPDTGIQFTGVQTRHDAVRVIGKLDFPDTHPMLD 120 Query: 121 HFRFLKKYADQAHVTPKMTIPSPAVLHFRGGRKLISKEVYPDLEEFYQDLGKTYRKAVKA 180 HFRFLKK+AD AHVT KMTIPSPAVLHFRGGRK ISKEVYPDL+ FY+DLGKTYRKAVKA Sbjct: 121 HFRFLKKHADTAHVTAKMTIPSPAVLHFRGGRKSISKEVYPDLDAFYEDLGKTYRKAVKA 180 Query: 181 FYDAGCRYLQFDDTVWAYLCSQEELQKSRDRGDNPDGLQEIYARVINYAIADRPSDMVIT 240 FYDAGCRYLQFDDTVWAYLCSQ+EL+K+R+RGDNPDGLQ+IY+R+INYAIA+RP+DM IT Sbjct: 181 FYDAGCRYLQFDDTVWAYLCSQDELKKARERGDNPDGLQQIYSRIINYAIAERPADMTIT 240 Query: 241 THVCRGNFRSTWISSGGYEPVAETLLAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVV 300 THVCRGNFRSTWISSGGYEPVAET+LA TNYDGYFLEYDS+RAGGFEPLRFLPKGNKVVV Sbjct: 241 THVCRGNFRSTWISSGGYEPVAETMLANTNYDGYFLEYDSERAGGFEPLRFLPKGNKVVV 300 Query: 301 VGVITSKFGELEKKDDIKRRLEEASKFAPIEQLAVSPQCGFASTEEGNILSEEEQWAKLR 360 VG++TSK GELEKKDDIKRRLEEASKFAP++QLA+SPQCGFASTEEGNILSEEEQWAKLR Sbjct: 301 VGLVTSKVGELEKKDDIKRRLEEASKFAPLDQLALSPQCGFASTEEGNILSEEEQWAKLR 360 Query: 361 LAVEVANEVWGK 372 L VE+A E+WGK Sbjct: 361 LCVELAEEIWGK 372 >ref|NP_772588.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Bradyrhizobium japonicum USDA 110] dbj|BAC51213.1| bll5948 [Bradyrhizobium japonicum USDA 110] Length = 372 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/371 (90%), Positives = 357/371 (96%) Query: 1 MQRTKPPFRADEVGSLLRPPKIKEARARLEKGEISADELRKVEDMEIEKVVHKQASVGLK 60 MQRTK PFRADEVGSLLRP KIKEARARLEKGEISAD+LRK+EDMEIEKVVHKQASVGLK Sbjct: 1 MQRTKAPFRADEVGSLLRPAKIKEARARLEKGEISADDLRKIEDMEIEKVVHKQASVGLK 60 Query: 61 LATDGEFRRSWWHFDFLSHLTGCELFHPDMGIQFAGVQTRHDAIRVIGKLDFSDHHPMLD 120 LATDGEFRRSWWHFDFL+ LTGCELFHPD GIQFAGVQTRHDA+RVI KLDF D HPMLD Sbjct: 61 LATDGEFRRSWWHFDFLAKLTGCELFHPDTGIQFAGVQTRHDAVRVISKLDFPDDHPMLD 120 Query: 121 HFRFLKKYADQAHVTPKMTIPSPAVLHFRGGRKLISKEVYPDLEEFYQDLGKTYRKAVKA 180 HFRFLKK ADQAHVT KMTIPSPAVLHFRGGRK ISK+VYPDL+ FY+DLGKTYRKAVKA Sbjct: 121 HFRFLKKCADQAHVTAKMTIPSPAVLHFRGGRKSISKDVYPDLDAFYEDLGKTYRKAVKA 180 Query: 181 FYDAGCRYLQFDDTVWAYLCSQEELQKSRDRGDNPDGLQEIYARVINYAIADRPSDMVIT 240 FYDAGCRYLQFDDTVWAYLCS +ELQK+R+RGDNPDGLQ+IYAR+INYA+A++P+DMV+T Sbjct: 181 FYDAGCRYLQFDDTVWAYLCSPDELQKARERGDNPDGLQQIYARIINYALAEKPADMVVT 240 Query: 241 THVCRGNFRSTWISSGGYEPVAETLLAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVV 300 THVCRGNFRSTWISSGGYEPVAET+LAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVV Sbjct: 241 THVCRGNFRSTWISSGGYEPVAETMLAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVV 300 Query: 301 VGVITSKFGELEKKDDIKRRLEEASKFAPIEQLAVSPQCGFASTEEGNILSEEEQWAKLR 360 VGVITSKFGELEKKDDIKRRLEEA+KFAP+EQLA+SPQCGFASTEEGNILSEEEQWAKL Sbjct: 301 VGVITSKFGELEKKDDIKRRLEEAAKFAPLEQLALSPQCGFASTEEGNILSEEEQWAKLS 360 Query: 361 LAVEVANEVWG 371 LAVE+A EVWG Sbjct: 361 LAVEIAKEVWG 371 >ref|YP_001993523.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Rhodopseudomonas palustris TIE-1] gb|ACF03048.1| Methionine synthase vitamin-B12 independent [Rhodopseudomonas palustris TIE-1] Length = 373 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/371 (88%), Positives = 352/371 (94%) Query: 2 QRTKPPFRADEVGSLLRPPKIKEARARLEKGEISADELRKVEDMEIEKVVHKQASVGLKL 61 QRTKPPFRADEVGSLLRP KIKEARA+LEKGEI+A LR++EDMEIEKVVHKQ+++GLKL Sbjct: 3 QRTKPPFRADEVGSLLRPQKIKEARAKLEKGEITAANLREIEDMEIEKVVHKQSAIGLKL 62 Query: 62 ATDGEFRRSWWHFDFLSHLTGCELFHPDMGIQFAGVQTRHDAIRVIGKLDFSDHHPMLDH 121 ATDGEFRRSWWHFDFLSHLTGCEL+HPD GIQFAGVQTR+D+IRV+GKLDF D HPMLDH Sbjct: 63 ATDGEFRRSWWHFDFLSHLTGCELYHPDTGIQFAGVQTRNDSIRVVGKLDFPDDHPMLDH 122 Query: 122 FRFLKKYADQAHVTPKMTIPSPAVLHFRGGRKLISKEVYPDLEEFYQDLGKTYRKAVKAF 181 FRFLKK+AD AHVTPKMTIPSPAVLHFRGGRK IS EVYPDL+ F+QDL KTYRKAVKAF Sbjct: 123 FRFLKKHADIAHVTPKMTIPSPAVLHFRGGRKAISSEVYPDLDGFFQDLAKTYRKAVKAF 182 Query: 182 YDAGCRYLQFDDTVWAYLCSQEELQKSRDRGDNPDGLQEIYARVINYAIADRPSDMVITT 241 YDAGCRYLQFDDTVWAYLCSQ+ELQK+RDRGDNPD LQ+IYARVINYAIADRPSDMVITT Sbjct: 183 YDAGCRYLQFDDTVWAYLCSQDELQKARDRGDNPDNLQQIYARVINYAIADRPSDMVITT 242 Query: 242 HVCRGNFRSTWISSGGYEPVAETLLAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVVV 301 HVCRGNFRSTWISSGGYEPVAETLL G NYDGYFLEYDS+RAGGFEPLRFLPKGNKVVVV Sbjct: 243 HVCRGNFRSTWISSGGYEPVAETLLGGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVVV 302 Query: 302 GVITSKFGELEKKDDIKRRLEEASKFAPIEQLAVSPQCGFASTEEGNILSEEEQWAKLRL 361 GVITSKFGELE KD IKRRLEEASKF P+EQLA+SPQCGFASTEEGNILSE+EQW KLRL Sbjct: 303 GVITSKFGELESKDAIKRRLEEASKFVPLEQLALSPQCGFASTEEGNILSEQEQWDKLRL 362 Query: 362 AVEVANEVWGK 372 AVEV+ +VWGK Sbjct: 363 AVEVSWDVWGK 373 >ref|YP_004110568.1| methionine synthase vitamin-B12 independent [Rhodopseudomonas palustris DX-1] gb|ADU45835.1| Methionine synthase vitamin-B12 independent [Rhodopseudomonas palustris DX-1] Length = 373 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/371 (88%), Positives = 351/371 (94%) Query: 2 QRTKPPFRADEVGSLLRPPKIKEARARLEKGEISADELRKVEDMEIEKVVHKQASVGLKL 61 QRTKPPFRADEVGSLLRP KIKEARA+LEKGEI+A LR++EDMEIEKVVHKQ+++GLKL Sbjct: 3 QRTKPPFRADEVGSLLRPQKIKEARAKLEKGEITAANLREIEDMEIEKVVHKQSAIGLKL 62 Query: 62 ATDGEFRRSWWHFDFLSHLTGCELFHPDMGIQFAGVQTRHDAIRVIGKLDFSDHHPMLDH 121 ATDGEFRRSWWHFDFL+ LTGCEL+HPD GIQFAGVQTR+D+IRVIGKLDF D HPMLDH Sbjct: 63 ATDGEFRRSWWHFDFLAKLTGCELYHPDTGIQFAGVQTRNDSIRVIGKLDFPDDHPMLDH 122 Query: 122 FRFLKKYADQAHVTPKMTIPSPAVLHFRGGRKLISKEVYPDLEEFYQDLGKTYRKAVKAF 181 FRFLKK+AD AHVTPKMTIPSPAVLHFRGGRK IS EVYPDL+ F+QDL KTYRKAVKAF Sbjct: 123 FRFLKKHADIAHVTPKMTIPSPAVLHFRGGRKAISSEVYPDLDGFFQDLAKTYRKAVKAF 182 Query: 182 YDAGCRYLQFDDTVWAYLCSQEELQKSRDRGDNPDGLQEIYARVINYAIADRPSDMVITT 241 YDAGCRYLQFDDTVWAYLCSQ+ELQK+RDRGDNPD LQ+IYARVINYAIADRP+DMVITT Sbjct: 183 YDAGCRYLQFDDTVWAYLCSQDELQKARDRGDNPDNLQQIYARVINYAIADRPADMVITT 242 Query: 242 HVCRGNFRSTWISSGGYEPVAETLLAGTNYDGYFLEYDSDRAGGFEPLRFLPKGNKVVVV 301 HVCRGNFRSTWISSGGYEPVAETLL G NYDGYFLEYDS+RAGGFEPLRFLPKGNKVVVV Sbjct: 243 HVCRGNFRSTWISSGGYEPVAETLLGGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVVV 302 Query: 302 GVITSKFGELEKKDDIKRRLEEASKFAPIEQLAVSPQCGFASTEEGNILSEEEQWAKLRL 361 GVITSKFGELE KD IKRRLEEASKF P++QLA+SPQCGFASTEEGNILSE+EQW KLRL Sbjct: 303 GVITSKFGELESKDAIKRRLEEASKFVPLDQLALSPQCGFASTEEGNILSEQEQWDKLRL 362 Query: 362 AVEVANEVWGK 372 AVEVA EVWGK Sbjct: 363 AVEVAQEVWGK 373