BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0009.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772591.1| ABC transporter permease protein [Bradyrhizobiu... 514 e-143 ref|YP_004110571.1| inner-membrane translocator [Rhodopseudomona... 497 e-138 ref|YP_001207156.1| branched chain amino acid ABC transporter pe... 491 e-137 ref|YP_485202.1| inner-membrane translocator [Rhodopseudomonas p... 487 e-135 ref|NP_949363.1| branched chain amino acid ABC transporter perme... 473 e-131 >ref|NP_772591.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51216.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 287/342 (83%), Positives = 311/342 (90%) Query: 1 MTALFDVSTHAMASARWRASEVAFWALALACAFLFPSRYLIMTDIVRLGLFALSLDLILG 60 M+A DV HA ARW EVAFW + LAC F FP+RYLIMTDI+RL LFA+SLDLILG Sbjct: 1 MSASSDVGYHAQRHARWHYGEVAFWLIVLACGFAFPTRYLIMTDILRLALFAMSLDLILG 60 Query: 61 YAGIVSLGHAAFFGIGAYSAGLLALHGIINEPVIALVAAGLVAALLGFLTSFLVIRGVDL 120 YAGIVSLGHAAFFG+GAY+AGLLALHGI+NEPV+AL+ AGL A +LGF TSFLVIRGVDL Sbjct: 61 YAGIVSLGHAAFFGVGAYAAGLLALHGIVNEPVLALILAGLAAMVLGFATSFLVIRGVDL 120 Query: 121 TRLMVTLGIALLLEALAERFSNITGGTDGLQGIEMQPILGLFTFDMFGKTGFFYSLIVMF 180 TRLMVTLGIALLLEALAERFSNITGGTDGLQGIEMQPI G FDMFGK GFFYSL V+F Sbjct: 121 TRLMVTLGIALLLEALAERFSNITGGTDGLQGIEMQPIFGEIPFDMFGKAGFFYSLAVLF 180 Query: 181 ILFLLARRVVHSPFGLSLRAIRNNPLRAAAIGVPVNRRLIAVYTLAAFYAGIAGALFTQT 240 +LFL ARRVVHSPFGLSLRAI+NNPLRAAAIG+PVNRRLIA+YTLAAFYAGIAGALFTQT Sbjct: 181 VLFLFARRVVHSPFGLSLRAIKNNPLRAAAIGIPVNRRLIAIYTLAAFYAGIAGALFTQT 240 Query: 241 TALASLDVFSFERSADLMLVLVIGGTGYLYGGLIGAVVFKMLQELFQSITPQYWLFWIGL 300 TA+ASLDVF+FERSADLMLVLVIGGTGYLYGGL+GAVVF+MLQELF +ITPQYW FWIGL Sbjct: 241 TAIASLDVFAFERSADLMLVLVIGGTGYLYGGLVGAVVFRMLQELFSTITPQYWQFWIGL 300 Query: 301 VLVVIVLVGRARIHRWVLFVPNLIIRQFAGRKAAVAVPESDA 342 VLVVIVLVGR R+HRWVL+VPNLII+Q AGRKA VAVPESDA Sbjct: 301 VLVVIVLVGRQRLHRWVLYVPNLIIKQVAGRKAVVAVPESDA 342 >ref|YP_004110571.1| inner-membrane translocator [Rhodopseudomonas palustris DX-1] gb|ADU45838.1| inner-membrane translocator [Rhodopseudomonas palustris DX-1] Length = 342 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 260/333 (78%), Positives = 294/333 (88%) Query: 7 VSTHAMASARWRASEVAFWALALACAFLFPSRYLIMTDIVRLGLFALSLDLILGYAGIVS 66 V HA +ARW +E FWA+ + C LFPSRYLIMT+IVRLGLFALSLDLILGYAGIVS Sbjct: 10 VGLHARRTARWHWAEFVFWAVLIGCGLLFPSRYLIMTEIVRLGLFALSLDLILGYAGIVS 69 Query: 67 LGHAAFFGIGAYSAGLLALHGIINEPVIALVAAGLVAALLGFLTSFLVIRGVDLTRLMVT 126 LGHAAFFG+GAY AGLLALHGI+ EPV+AL+ AGLVAA+LGF TSFLVIRGVDLTRLMVT Sbjct: 70 LGHAAFFGVGAYCAGLLALHGIVGEPVLALLVAGLVAAVLGFATSFLVIRGVDLTRLMVT 129 Query: 127 LGIALLLEALAERFSNITGGTDGLQGIEMQPILGLFTFDMFGKTGFFYSLIVMFILFLLA 186 LGIALLLEALAERFS+ITGGTDGLQGI MQP+LG+F FD+FGK GF+Y++ V+F+LFLLA Sbjct: 130 LGIALLLEALAERFSDITGGTDGLQGIVMQPLLGIFEFDIFGKVGFWYTVAVLFVLFLLA 189 Query: 187 RRVVHSPFGLSLRAIRNNPLRAAAIGVPVNRRLIAVYTLAAFYAGIAGALFTQTTALASL 246 RRVVHSPFGLSLRAIRNNPLRA+A+G+PVN RL+A+YT AAFYAGIAGALFTQTT LASL Sbjct: 190 RRVVHSPFGLSLRAIRNNPLRASAVGIPVNTRLVAIYTFAAFYAGIAGALFTQTTQLASL 249 Query: 247 DVFSFERSADLMLVLVIGGTGYLYGGLIGAVVFKMLQELFQSITPQYWLFWIGLVLVVIV 306 DVFSFERSADL+LVLV+GGTGYLYGGLIGAVVFK+LQE F +TPQYWLFWIGLVLVVIV Sbjct: 250 DVFSFERSADLILVLVLGGTGYLYGGLIGAVVFKLLQETFSILTPQYWLFWIGLVLVVIV 309 Query: 307 LVGRARIHRWVLFVPNLIIRQFAGRKAAVAVPE 339 ++GR R+HRWVLF+P ++R GR E Sbjct: 310 MIGRERLHRWVLFLPRAVMRALRGRNTNAGAAE 342 >ref|YP_001207156.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL78939.1| conserved hypothetical protein; putative membrane protein; putative branched-chain amino acid ABC transport system permease protein [Bradyrhizobium sp. ORS 278] Length = 345 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 265/337 (78%), Positives = 303/337 (89%) Query: 6 DVSTHAMASARWRASEVAFWALALACAFLFPSRYLIMTDIVRLGLFALSLDLILGYAGIV 65 +V HA RW SE AFW + LA PSRYLIMT+I+RL LFALSLDLILGYAGIV Sbjct: 8 EVGFHARQHGRWHWSEFAFWIVVLAVGLAVPSRYLIMTEILRLALFALSLDLILGYAGIV 67 Query: 66 SLGHAAFFGIGAYSAGLLALHGIINEPVIALVAAGLVAALLGFLTSFLVIRGVDLTRLMV 125 SLGHAAFFG+GAY AGLL++HGIINEPV+AL+ AGL A +LGF TSFLVIRGVDLTRLMV Sbjct: 68 SLGHAAFFGVGAYCAGLLSVHGIINEPVLALIVAGLAATVLGFATSFLVIRGVDLTRLMV 127 Query: 126 TLGIALLLEALAERFSNITGGTDGLQGIEMQPILGLFTFDMFGKTGFFYSLIVMFILFLL 185 TLGIALL+EALAERFSNITGGTDGLQGI++QPI GLF FDMFG+TGFFYSL V+F+LFLL Sbjct: 128 TLGIALLMEALAERFSNITGGTDGLQGIDIQPIFGLFAFDMFGRTGFFYSLAVLFVLFLL 187 Query: 186 ARRVVHSPFGLSLRAIRNNPLRAAAIGVPVNRRLIAVYTLAAFYAGIAGALFTQTTALAS 245 AR +VHSPFGLSLRAI+NNPLRA+AIG+PVN+RLIA+YT+AAFYAGIAGALFTQTTALAS Sbjct: 188 ARMIVHSPFGLSLRAIKNNPLRASAIGIPVNKRLIAIYTVAAFYAGIAGALFTQTTALAS 247 Query: 246 LDVFSFERSADLMLVLVIGGTGYLYGGLIGAVVFKMLQELFQSITPQYWLFWIGLVLVVI 305 LDVFSFERSADL+L+LVIGG+GYLYGGLIGA VF+MLQELFQ ITPQYW+FWIGLVLVVI Sbjct: 248 LDVFSFERSADLVLLLVIGGSGYLYGGLIGAAVFRMLQELFQWITPQYWMFWIGLVLVVI 307 Query: 306 VLVGRARIHRWVLFVPNLIIRQFAGRKAAVAVPESDA 342 V+VGR RIH + L++PNLI++Q AGRKAAV + +++A Sbjct: 308 VMVGRHRIHAYALWLPNLILKQIAGRKAAVVLTDNEA 344 >ref|YP_485202.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] gb|ABD06291.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] Length = 339 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 258/327 (78%), Positives = 292/327 (89%), Gaps = 1/327 (0%) Query: 1 MTALFD-VSTHAMASARWRASEVAFWALALACAFLFPSRYLIMTDIVRLGLFALSLDLIL 59 MTA D V HA +ARW A E FW + C LFPSRYLIMT+I+R+GLFALSLDLIL Sbjct: 1 MTAPADNVGFHARRTARWHAGEFVFWIALIGCGLLFPSRYLIMTEILRIGLFALSLDLIL 60 Query: 60 GYAGIVSLGHAAFFGIGAYSAGLLALHGIINEPVIALVAAGLVAALLGFLTSFLVIRGVD 119 GYAGIVSLGHAAFFG+GAY+AGL+ALHGI+ EPV+AL+ AGLVAA+LGF TSFLVIRGVD Sbjct: 61 GYAGIVSLGHAAFFGVGAYAAGLMALHGIVGEPVLALLVAGLVAAVLGFATSFLVIRGVD 120 Query: 120 LTRLMVTLGIALLLEALAERFSNITGGTDGLQGIEMQPILGLFTFDMFGKTGFFYSLIVM 179 LTRLMVTLGIALL+EALAERFS+ITGG+DGLQGI MQPILGLF FD+FGK F+YS+ V+ Sbjct: 121 LTRLMVTLGIALLMEALAERFSDITGGSDGLQGIVMQPILGLFEFDIFGKVAFWYSVAVL 180 Query: 180 FILFLLARRVVHSPFGLSLRAIRNNPLRAAAIGVPVNRRLIAVYTLAAFYAGIAGALFTQ 239 F+LFLLARRVVHSPFGLSLRAIRNNPLRA+A+G+PVNRRL+ VYTLAAFYAGIAGALFTQ Sbjct: 181 FVLFLLARRVVHSPFGLSLRAIRNNPLRASAVGIPVNRRLVMVYTLAAFYAGIAGALFTQ 240 Query: 240 TTALASLDVFSFERSADLMLVLVIGGTGYLYGGLIGAVVFKMLQELFQSITPQYWLFWIG 299 TT LASLDVFSFERSADL+LVLV+GGTGYLYGGLIGAV+FK+LQE F ++TPQYWLFWIG Sbjct: 241 TTQLASLDVFSFERSADLVLVLVLGGTGYLYGGLIGAVIFKILQEFFSTLTPQYWLFWIG 300 Query: 300 LVLVVIVLVGRARIHRWVLFVPNLIIR 326 LVLV IVL+GR R+ WVLFVP ++R Sbjct: 301 LVLVTIVLIGRERLQNWVLFVPRQVMR 327 >ref|NP_949363.1| branched chain amino acid ABC transporter permease [Rhodopseudomonas palustris CGA009] ref|YP_001993526.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] emb|CAE29468.1| possible branched-chain amino acid ABC transport system permease protein [Rhodopseudomonas palustris CGA009] gb|ACF03051.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 341 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 261/328 (79%), Positives = 294/328 (89%) Query: 7 VSTHAMASARWRASEVAFWALALACAFLFPSRYLIMTDIVRLGLFALSLDLILGYAGIVS 66 V HA +ARW +E AFWA+ + C LFPSRYLIMT+IVRLGLFALSLDLILGYAGIVS Sbjct: 10 VGFHARRTARWHWAEFAFWAVLIGCGLLFPSRYLIMTEIVRLGLFALSLDLILGYAGIVS 69 Query: 67 LGHAAFFGIGAYSAGLLALHGIINEPVIALVAAGLVAALLGFLTSFLVIRGVDLTRLMVT 126 LGHAAFFG+GAYSAGLLALHGI+ EPV+AL+ AGL AA+LGF TSFLVIRGVDLTRLMVT Sbjct: 70 LGHAAFFGVGAYSAGLLALHGIVGEPVLALLVAGLAAAVLGFATSFLVIRGVDLTRLMVT 129 Query: 127 LGIALLLEALAERFSNITGGTDGLQGIEMQPILGLFTFDMFGKTGFFYSLIVMFILFLLA 186 LGIALLLEALAERFS+ITGGTDGLQGI MQP+LG+F FD+FGK GF+Y++ V+F+LFLLA Sbjct: 130 LGIALLLEALAERFSDITGGTDGLQGIVMQPLLGIFEFDLFGKVGFWYTVAVLFVLFLLA 189 Query: 187 RRVVHSPFGLSLRAIRNNPLRAAAIGVPVNRRLIAVYTLAAFYAGIAGALFTQTTALASL 246 RRVVHSPFGLSLRAIRNNPLRA+A+G+PVN RL+A+YT AAFYAG+AGALFTQTT LASL Sbjct: 190 RRVVHSPFGLSLRAIRNNPLRASAVGIPVNTRLVAIYTFAAFYAGLAGALFTQTTQLASL 249 Query: 247 DVFSFERSADLMLVLVIGGTGYLYGGLIGAVVFKMLQELFQSITPQYWLFWIGLVLVVIV 306 DVFSFERSADL+LVLV+GGTGYLYGGLIGAVVFK+LQE F +TPQYWLFWIGLVLVVIV Sbjct: 250 DVFSFERSADLILVLVLGGTGYLYGGLIGAVVFKLLQETFSILTPQYWLFWIGLVLVVIV 309 Query: 307 LVGRARIHRWVLFVPNLIIRQFAGRKAA 334 ++GR R+HRWVLF+P I R G K A Sbjct: 310 MIGRERLHRWVLFLPRSIARAVRGGKPA 337