BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0006.p (393 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772593.1| ABC transporter substrate-binding protein [Brad... 668 0.0 ref|YP_783120.1| extracellular ligand-binding receptor [Rhodopse... 655 0.0 ref|YP_568724.1| twin-arginine translocation pathway signal [Rho... 654 0.0 ref|YP_001207158.1| branched chain amino acid ABC transporter [B... 644 0.0 ref|YP_001241566.1| branched-chain amino acid ABC transporter [B... 642 0.0 >ref|NP_772593.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51218.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 392 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/393 (89%), Positives = 363/393 (92%), Gaps = 1/393 (0%) Query: 1 MFNRRKMLLWGAASAVLPGLCASVPAWADDAVKIGLILPMTGGQASTGKQIDNAIKLYMQ 60 MF RK L W AA A + G A PA A+D VK+GLILPMTGGQASTGKQI+NAIKLYMQ Sbjct: 1 MF-ERKQLSWAAAVAAVAGFVAVAPARAEDTVKVGLILPMTGGQASTGKQIENAIKLYMQ 59 Query: 61 QKGDTVAGKKIEIILKDDAAVPDNTKRLAQELIVNDKVNFIAGFGVTPAALAAAPLATQA 120 QKGDTVAGKKIEIILKDDAA+PD TK AQELIVNDKVNFIAGFGVTPAALAAAPLATQA Sbjct: 60 QKGDTVAGKKIEIILKDDAAIPDKTKTAAQELIVNDKVNFIAGFGVTPAALAAAPLATQA 119 Query: 121 KIPEVVMAAGTSIITERSPYIVRTSFTLAQSSTIIGDWAVKNGIKKVATLTSDYAPGNDA 180 KIPEVVMAAGTSIITERSPYIVRTSFTLAQSSTII DWAVKNGIKKVATLTSDYAPGNDA Sbjct: 120 KIPEVVMAAGTSIITERSPYIVRTSFTLAQSSTIIADWAVKNGIKKVATLTSDYAPGNDA 179 Query: 181 LTFFKQHFTAGGGEIVEEVKVPLANPDFAPFLQRMKDSKPDAMFVFVPAGQGGNFMKQYA 240 L FFKQ+FTAGGGE+VEEVK PLANPDFAPFLQRMKD+KPDA+FVFVPAGQGGNFMKQYA Sbjct: 180 LNFFKQNFTAGGGEVVEEVKTPLANPDFAPFLQRMKDAKPDAIFVFVPAGQGGNFMKQYA 239 Query: 241 ERGLDKSGIRVIGPGDVMDDDLLNNMGDAALGAVTAHLYSAAHPSAMNKDFVAAYKNAFG 300 ERGLDK+GI+VIGPGDV DDDLLNNMGDA LG VTAHLYSAAHPSAMNKDFVAAYK AFG Sbjct: 240 ERGLDKAGIKVIGPGDVTDDDLLNNMGDAVLGTVTAHLYSAAHPSAMNKDFVAAYKKAFG 299 Query: 301 NRPGFMAVSGYDGIHLIYEALKKTNGATDGDKLIEAMKGMKWESPRGPISIDPETRDIVQ 360 RPGFMAVSGYDGIHLIYEALKKT G TDG KL+EAMKG KWESPRGPISIDPETRDIVQ Sbjct: 300 TRPGFMAVSGYDGIHLIYEALKKTGGDTDGTKLVEAMKGQKWESPRGPISIDPETRDIVQ 359 Query: 361 NIYIRKVEKVDGELYNVEFATFEAVKDSGKTKK 393 NIYIRKVEKVDGELYNVEFATFEAVKD GKTKK Sbjct: 360 NIYIRKVEKVDGELYNVEFATFEAVKDLGKTKK 392 >ref|YP_783120.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ08140.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 392 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/393 (84%), Positives = 355/393 (90%), Gaps = 1/393 (0%) Query: 1 MFNRRKMLLWGAASAVLPGLCASVPAWADDAVKIGLILPMTGGQASTGKQIDNAIKLYMQ 60 M R +LL A A+ GL + A A + VK+GLI+PMTGGQASTGKQIDNA+KLY+Q Sbjct: 1 MLVRTTLLLQLACVAIAAGLGFA-GAQAQETVKVGLIVPMTGGQASTGKQIDNAVKLYIQ 59 Query: 61 QKGDTVAGKKIEIILKDDAAVPDNTKRLAQELIVNDKVNFIAGFGVTPAALAAAPLATQA 120 Q GDTVAGKKIEIILKDDA +PDNTKRLAQELIVNDKV IAGFG+TP+ALAAAPLATQA Sbjct: 60 QHGDTVAGKKIEIILKDDATLPDNTKRLAQELIVNDKVQVIAGFGITPSALAAAPLATQA 119 Query: 121 KIPEVVMAAGTSIITERSPYIVRTSFTLAQSSTIIGDWAVKNGIKKVATLTSDYAPGNDA 180 K+PE+VMAAGTSIITERSPYIVRTSFTLAQSS+IIGDWA KNGIKKVATLTSDYAPGNDA Sbjct: 120 KVPEIVMAAGTSIITERSPYIVRTSFTLAQSSSIIGDWAAKNGIKKVATLTSDYAPGNDA 179 Query: 181 LTFFKQHFTAGGGEIVEEVKVPLANPDFAPFLQRMKDSKPDAMFVFVPAGQGGNFMKQYA 240 L FK+HFT GGGEIVEEVK PL+NPDFAPFLQRMKD+KPDAMFVFVPAGQGGNFMKQYA Sbjct: 180 LASFKEHFTKGGGEIVEEVKTPLSNPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQYA 239 Query: 241 ERGLDKSGIRVIGPGDVMDDDLLNNMGDAALGAVTAHLYSAAHPSAMNKDFVAAYKNAFG 300 ERGLDKSGI+VIGPGDVMDDDLLN MGDAALGAVTAHLYSAAHPSA NK+FVAAYK A+G Sbjct: 240 ERGLDKSGIKVIGPGDVMDDDLLNGMGDAALGAVTAHLYSAAHPSATNKEFVAAYKKAYG 299 Query: 301 NRPGFMAVSGYDGIHLIYEALKKTNGATDGDKLIEAMKGMKWESPRGPISIDPETRDIVQ 360 RPGFMAV GYDGIHL+YEALKKT G DGD LI AMKGM WESPRGPISIDP+TRDIVQ Sbjct: 300 TRPGFMAVGGYDGIHLLYEALKKTGGKADGDSLIAAMKGMAWESPRGPISIDPDTRDIVQ 359 Query: 361 NIYIRKVEKVDGELYNVEFATFEAVKDSGKTKK 393 NIYIR+VEKVDGELYN+EFATFEAVKD GKTKK Sbjct: 360 NIYIRRVEKVDGELYNIEFATFEAVKDPGKTKK 392 >ref|YP_568724.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB5] gb|ABE38823.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB5] Length = 392 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/393 (84%), Positives = 357/393 (90%), Gaps = 1/393 (0%) Query: 1 MFNRRKMLLWGAASAVLPGLCASVPAWADDAVKIGLILPMTGGQASTGKQIDNAIKLYMQ 60 M R+ LL A AV G + A A+D K+GLI+PMTGGQASTGKQIDNAIKLY++ Sbjct: 1 MLIGRRTLLQAACIAVATGAPIAA-AQAEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIK 59 Query: 61 QKGDTVAGKKIEIILKDDAAVPDNTKRLAQELIVNDKVNFIAGFGVTPAALAAAPLATQA 120 + GDTVAGKKIE+ILKDDAA+PDNTKRLAQELIVNDKVN IAGFG+TPAALAAAPLATQA Sbjct: 60 KHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITPAALAAAPLATQA 119 Query: 121 KIPEVVMAAGTSIITERSPYIVRTSFTLAQSSTIIGDWAVKNGIKKVATLTSDYAPGNDA 180 K+PE+VMAAGTSIITERSPYIVRTSFTLAQSS IIGDWA KNGIKKVATLTSDYAPGNDA Sbjct: 120 KVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDA 179 Query: 181 LTFFKQHFTAGGGEIVEEVKVPLANPDFAPFLQRMKDSKPDAMFVFVPAGQGGNFMKQYA 240 L FFK+ FTAGGGEIVEE+KVPLANPDFAPFLQRMKD+KPDAMFVFVPAGQGGNFMKQ+A Sbjct: 180 LAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFA 239 Query: 241 ERGLDKSGIRVIGPGDVMDDDLLNNMGDAALGAVTAHLYSAAHPSAMNKDFVAAYKNAFG 300 ERGLDKSGI+VIGPGDVMDDDLLN+MGDAALG VTAH+YSAAHPSAMNK+FVAAYK FG Sbjct: 240 ERGLDKSGIKVIGPGDVMDDDLLNSMGDAALGVVTAHMYSAAHPSAMNKEFVAAYKKEFG 299 Query: 301 NRPGFMAVSGYDGIHLIYEALKKTNGATDGDKLIEAMKGMKWESPRGPISIDPETRDIVQ 360 RPGFMAV GYDGIHL++EALKKT G DGD LI AMKGMKWESPRGPISIDPETRDIVQ Sbjct: 300 QRPGFMAVGGYDGIHLVFEALKKTGGKADGDSLIAAMKGMKWESPRGPISIDPETRDIVQ 359 Query: 361 NIYIRKVEKVDGELYNVEFATFEAVKDSGKTKK 393 NIYIRKVEKVDGELYN+EFA F+AVKD GKTKK Sbjct: 360 NIYIRKVEKVDGELYNIEFAKFDAVKDPGKTKK 392 >ref|YP_001207158.1| branched chain amino acid ABC transporter [Bradyrhizobium sp. ORS 278] emb|CAL78941.1| conserved hypothetical protein; putative exported protein; putative ABC-type branched-chain amino acid transport systems [Bradyrhizobium sp. ORS 278] Length = 392 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/365 (88%), Positives = 341/365 (93%) Query: 29 DDAVKIGLILPMTGGQASTGKQIDNAIKLYMQQKGDTVAGKKIEIILKDDAAVPDNTKRL 88 +D KIGLI+PMTGGQASTGKQIDNAIKLYMQQ GDTVAGKKI++ILKDDAA+PDNTKRL Sbjct: 28 EDVFKIGLIVPMTGGQASTGKQIDNAIKLYMQQNGDTVAGKKIQVILKDDAALPDNTKRL 87 Query: 89 AQELIVNDKVNFIAGFGVTPAALAAAPLATQAKIPEVVMAAGTSIITERSPYIVRTSFTL 148 AQELIVNDKVN IAGFGVTPAA AAAPLATQAKIPEVVMAAGTSIITE+SPYIVRTSFTL Sbjct: 88 AQELIVNDKVNVIAGFGVTPAAFAAAPLATQAKIPEVVMAAGTSIITEKSPYIVRTSFTL 147 Query: 149 AQSSTIIGDWAVKNGIKKVATLTSDYAPGNDALTFFKQHFTAGGGEIVEEVKVPLANPDF 208 QSSTIIGDWAVKNGIKKVATLTSDYAPGNDAL FK+ FTAGGGEIVEEVKVPLANPDF Sbjct: 148 PQSSTIIGDWAVKNGIKKVATLTSDYAPGNDALASFKERFTAGGGEIVEEVKVPLANPDF 207 Query: 209 APFLQRMKDSKPDAMFVFVPAGQGGNFMKQYAERGLDKSGIRVIGPGDVMDDDLLNNMGD 268 APFLQRMKD+KPDAMFVFVPAGQGGNFMKQYAERGLDKSGI+VIGPGDV DDDLLN+MGD Sbjct: 208 APFLQRMKDAKPDAMFVFVPAGQGGNFMKQYAERGLDKSGIKVIGPGDVTDDDLLNDMGD 267 Query: 269 AALGAVTAHLYSAAHPSAMNKDFVAAYKNAFGNRPGFMAVSGYDGIHLIYEALKKTNGAT 328 A LGAVTAH+YSAAHPS NK+FVAAYK AF +RPGFMAV GYDGI+LIY+ALKKT G T Sbjct: 268 AVLGAVTAHIYSAAHPSEKNKEFVAAYKKAFNSRPGFMAVGGYDGINLIYQALKKTEGKT 327 Query: 329 DGDKLIEAMKGMKWESPRGPISIDPETRDIVQNIYIRKVEKVDGELYNVEFATFEAVKDS 388 DGD LI AM+GM WESPRGPISIDPETRDI+QN+YIRKVEKVDGELYNVEF TFEAVKD Sbjct: 328 DGDSLIAAMRGMAWESPRGPISIDPETRDIIQNVYIRKVEKVDGELYNVEFQTFEAVKDP 387 Query: 389 GKTKK 393 GK KK Sbjct: 388 GKAKK 392 >ref|YP_001241566.1| branched-chain amino acid ABC transporter [Bradyrhizobium sp. BTAi1] gb|ABQ37660.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 392 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/365 (88%), Positives = 340/365 (93%) Query: 29 DDAVKIGLILPMTGGQASTGKQIDNAIKLYMQQKGDTVAGKKIEIILKDDAAVPDNTKRL 88 +D KIGLI+PMTGGQASTGKQIDNAIKLYMQQ GDTVAGKKI++ILKDDAA+PDNTKRL Sbjct: 28 EDVFKIGLIVPMTGGQASTGKQIDNAIKLYMQQNGDTVAGKKIQVILKDDAALPDNTKRL 87 Query: 89 AQELIVNDKVNFIAGFGVTPAALAAAPLATQAKIPEVVMAAGTSIITERSPYIVRTSFTL 148 AQELIVNDKVN IAGFGVTPAA AAAPLATQ KIPEVVMAAGTSIITE+SPYIVRTSFTL Sbjct: 88 AQELIVNDKVNVIAGFGVTPAAFAAAPLATQGKIPEVVMAAGTSIITEKSPYIVRTSFTL 147 Query: 149 AQSSTIIGDWAVKNGIKKVATLTSDYAPGNDALTFFKQHFTAGGGEIVEEVKVPLANPDF 208 QSSTIIGDWAVKNGIKKVATLTSDYAPGNDAL FK+ FTAGGGEIVEEVKVPL NPDF Sbjct: 148 PQSSTIIGDWAVKNGIKKVATLTSDYAPGNDALASFKERFTAGGGEIVEEVKVPLQNPDF 207 Query: 209 APFLQRMKDSKPDAMFVFVPAGQGGNFMKQYAERGLDKSGIRVIGPGDVMDDDLLNNMGD 268 APFLQRMKD+KPDAMFVFVPAGQGGNFMKQYAERGLDKSGI+VIGPGDV DDDLLN+MGD Sbjct: 208 APFLQRMKDAKPDAMFVFVPAGQGGNFMKQYAERGLDKSGIKVIGPGDVTDDDLLNDMGD 267 Query: 269 AALGAVTAHLYSAAHPSAMNKDFVAAYKNAFGNRPGFMAVSGYDGIHLIYEALKKTNGAT 328 A LGAVTAH+YSAAHPSA NK+FVAAYK A+ +RPGFMAV GYDGIHLIYEALKK+ G + Sbjct: 268 AVLGAVTAHIYSAAHPSAKNKEFVAAYKKAYNSRPGFMAVGGYDGIHLIYEALKKSGGKS 327 Query: 329 DGDKLIEAMKGMKWESPRGPISIDPETRDIVQNIYIRKVEKVDGELYNVEFATFEAVKDS 388 DGD L+ AMKGM WESPRGPISIDPETRDIVQN+YIRKVEKVDGELYNVEF TFEAVKD Sbjct: 328 DGDSLLAAMKGMAWESPRGPISIDPETRDIVQNVYIRKVEKVDGELYNVEFQTFEAVKDP 387 Query: 389 GKTKK 393 GK KK Sbjct: 388 GKAKK 392